Ss1.1-Pig4-TMW8039K01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAAAGGTGGCTCTGGCCGGGGCGGCTCGGCTTCCTGTGGCTATGTAGCTGAGCTTGTCG GCTCCGGGTCCTCCTTCGCTGCCGTCGCCGCGCCCTAGCGCGGAGCTGCTGCTGCTGCTC GAGAGAGAGAGAGAGAGACAGACAGACTGTCCTCACGCCCGCCGCGCTCCCTCGACGGCC GAGCTTGCTCTCTAGCCCGTGGGAGCGTCCCGGCCGAGCAGCCCTGAGGGGGGAGGGGAG GCCATTTTGTCCCGACCGACTCCCCGGAACCGGGCGGAGCGGCTGGGAGAGGCTGCGGAG CCGTGGTCGCCGCCCTCGAAGGCACCGGACGCCGCCACCGTCGAGGCTTCCTCGACGAAG CCGTTCCTAGGTCGCCCGCGCCCTCTCGAGCCCTCCTTTTTCCCACGCTTCCCCGGTCCT CCGGCCTGAGAACGCCTGAGCGAGGAGTTGTCCGTAGTGAGAGGGACTGATCCCTTGGGG CCGCCGGCGGCGAGAGCCTGAGCCGCTCCTCCCAATGGCGAAGAAGACGTACGACCTGCT TTTCAAGCTGCTCCTGATCGGGGACTCGGGAGTGGGGAAGACCTGCGTCCTTTTTCGTTT TTCGGATGATGCCTTCAACACCACCTTTATTTCCACCATAGGAATAGACTTTAAGATCAA AACAGTTGAATTACAAGGAAAGAAGATCAAGCTACAGATATGGGACACAGCAGGCCAGGA GCGATTTCACACGATCACAACCTCCTACTACAGAGGAGCAATGGGTATCATGCTAGTATA TGACATCACCAATGGTAAAAGTTTTGAAAACATCAGCAAATGGCTTAGAAACATAGATGA GCATGCCAACGAAGATGTGGAAAGAATGTTACTAGGAAACAAGTGTGATATGGATGATAA AAGAGTTGTTCCTAAAGGAAAAGGAGAACAGATTGCAAGAGAGCATGGTATTAGATTTTT TGAGACTAGTGCAAAAGCAAATATAAACATTGAAAAGGCGTTTCTCACATTAGCTGAAGA TATCCTTCGAAAGACCCCTGTAAAAGAGCCCAACAGTGAGAACGTAGATATCAGCAGTGG AGGAGGCGTGACAGGCTGGAAGAGCAAATGCTGCTGAGCGCTCTCCTGTTCCATCAGTCG CCATCCACCACCCTGTGTTCTCTTCTTGCTGCAAAATAAACCACTCTGTCCATTTTTAAC TCTAAATAGATATTTTTGTTCCTCATCTTAACTCCAATCCACCTATTTTATTTGTTCTTT CATCCGTGACTGCTTGCTGACTTTATAATTTTCTTCAAACAAAAAAATGTATAGAAAAAT CATGTCTGTGAGTTCATTTTTAAATGTACTTGCTCAGCTCACCACTGCATTTCAGTTGTA TTATAGTCCAGTTCTTATCAACATTAAAAACGATAGCAATCATTTCAACTCTATTCTGCA AATTGTATAAGAATAAAAGTTAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAAAGGTGGCTCTGGCCGGGGCGGCTCGGCTTCCTGTGGCTATGTAGCTGAGCTTGTCG GCTCCGGGTCCTCCTTCGCTGCCGTCGCCGCGCCCTAGCGCGGAGCTGCTGCTGCTGCTC GAGAGAGAGAGAGAGAGACAGACAGACTGTCCTCACGCCCGCCGCGCTCCCTCGACGGCC GAGCTTGCTCTCTAGCCCGTGGGAGCGTCCCGGCCGAGCAGCCCTGAGGGGGGAGGGGAG GCCATTTTGTCCCGACCGACTCCCCGGAACCGGGCGGAGCGGCTGGGAGAGGCTGCGGAG CCGTGGTCGCCGCCCTCGAAGGCACCGGACGCCGCCACCGTCGAGGCTTCCTCGACGAAG CCGTTCCTAGGTCGCCCGCGCCCTCTCGAGCCCTCCTTTTTCCCACGCTTCCCCGGTCCT CCGGCCTGAGAACGCCTGAGCGAGGAGTTGTCCGTAGTGAGAGGGACTGATCCCTTGGGG CCGCCGGCGGCGAGAGCCTGAGCCGCTCCTCCCAATGGCGAAGAAGACGTACGACCTGCT TTTCAAGCTGCTCCTGATCGGGGACTCGGGAGTGGGGAAGACCTGCGTCCTTTTTCGTTT TTCGGATGATGCCTTCAACACCACCTTTATTTCCACCATAGGAATAGACTTTAAGATCAA AACAGTTGAATTACAAGGAAAGAAGATCAAGCTACAGATATGGGACACAGCAGGCCAGGA GCGATTTCACACGATCACAACCTCCTACTACAGAGGAGCAATGGGTATCATGCTAGTATA TGACATCACCAATGGTAAAAGTTTTGAAAACATCAGCAAATGGCTTAGAAACATAGATGA GCATGCCAACGAAGATGTGGAAAGAATGTTACTAGGAAACAAGTGTGATATGGATGATAA AAGAGTTGTTCCTAAAGGAAAAGGAGAACAGATTGCAAGAGAGCATGGTATTAGATTTTT TGAGACTAGTGCAAAAGCAAATATAAACATTGAAAAGGCGTTTCTCACATTAGCTGAAGA TATCCTTCGAAAGACCCCTGTAAAAGAGCCCAACAGTGAGAACGTAGATATCAGCAGTGG AGGAGGCGTGACAGGCTGGAAGAGCAAATGCTGCTGAGCGCTCTCCTGTTCCATCAGTCG CCATCCACCACCCTGTGTTCTCTTCTTGCTGCAAAATAAACCACTCTGTCCATTTTTAAC TCTAAATAGATATTTTTGTTCCTCATCTTAACTCCAATCCACCTATTTTATTTGTTCTTT CATCCGTGACTGCTTGCTGACTTTATAATTTTCTTCAAACAAAAAAATGTATAGAAAAAT CATGTCTGTGAGTTCATTTTTAAATGTACTTGCTCAGCTCACCACTGCATTTCAGTTGTA TTATAGTCCAGTTCTTATCAACATTAAAAACGATAGCAATCATTTCAACTCTATTCTGCA AATTGTATAAGAATAAAAGTTAGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-649, gnl|bosTau2|chr11 (54590741-54591374) | |
| 1-649, gnl|Hg17|chr2 (26168643-26169262) | |
| 1-649, gnl|Mm7|chr12 (3228389-3227756) | |
| 523-642, gnl|bosTau2|chr10 (31092935-31093054) | |
| 523-642, gnl|Hg17|chr15 (61268882-61269001) | |
| 523-642, gnl|Mm7|chr9 (66951094-66950975) | |
| 676-972, gnl|bosTau2|chr18 (28548492-28548193) | |
| 676-972, gnl|Hg17|chr15 (53309938-53303382) | |
| 676-972, gnl|Mm7|chr9 (73114939-73127780) | |
| 702-841, gnl|bosTau2|chr11 (54646544-54646683) | |
| 702-841, gnl|canFam2|chr17 (23234586-23234679) | |
| 702-841, gnl|danRer3|chrNA (80998120-80998213) | |
| 702-841, gnl|dasNov1|scaffold_14951 (1644-1551) | |
| 702-841, gnl|echTel1|scaffold_135228 (295-388) | |
| 702-841, gnl|fr1|chrUn (177154018-177154111) | |
| 702-841, gnl|galGal2|chr3 (102952815-102952908) | |
| 702-841, gnl|hg17|chr2 (26244286-26244379) | |
| 702-841, gnl|Hg17|chr2 (26244287-26244426) | |
| 702-841, gnl|loxAfr1|scaffold_31428 (22077-22169) | |
| 702-841, gnl|mm7|chr12 (3175480-3175387) | |
| 702-841, gnl|Mm7|chr12 (3175477-3175338) | |
| 702-841, gnl|monDom2|scaffold_1 (150618336-150618243) | |
| 702-841, gnl|oryCun1|scaffold_203679 (11304-11211) | |
| 702-841, gnl|panTro1|chr12 (27151666-27151759) | |
| 702-841, gnl|rheMac2|chr13 (26063823-26063916) | |
| 702-841, gnl|rn3|chr6_random (447880-447787) | |
| 702-841, gnl|tetNig1|chr14 (1856756-1856849) | |
| 702-841, gnl|xenTro1|scaffold_661 (268444-268537) | |
| 1032-1464, gnl|bosTau2|chr11 (54653517-54653952) | |
| 1032-1464, gnl|Hg17|chr2 (26269456-26269890) | |
| 1032-1464, gnl|Mm7|chr12 (3168343-3167910) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-649, gnl|bosTau2|chr11 (54590741-54591374) | |
| 1-649, gnl|Hg17|chr2 (26168643-26169262) | |
| 1-649, gnl|Mm7|chr12 (3228389-3227756) | |
| 523-642, gnl|bosTau2|chr10 (31092935-31093054) | |
| 523-642, gnl|Hg17|chr15 (61268882-61269001) | |
| 523-642, gnl|Mm7|chr9 (66951094-66950975) | |
| 676-972, gnl|bosTau2|chr18 (28548492-28548193) | |
| 676-972, gnl|Hg17|chr15 (53309938-53303382) | |
| 676-972, gnl|Mm7|chr9 (73114939-73127780) | |
| 702-841, gnl|bosTau2|chr11 (54646544-54646683) | |
| 702-841, gnl|canFam2|chr17 (23234586-23234679) | |
| 702-841, gnl|danRer3|chrNA (80998120-80998213) | |
| 702-841, gnl|dasNov1|scaffold_14951 (1644-1551) | |
| 702-841, gnl|echTel1|scaffold_135228 (295-388) | |
| 702-841, gnl|fr1|chrUn (177154018-177154111) | |
| 702-841, gnl|galGal2|chr3 (102952815-102952908) | |
| 702-841, gnl|hg17|chr2 (26244286-26244379) | |
| 702-841, gnl|Hg17|chr2 (26244287-26244426) | |
| 702-841, gnl|loxAfr1|scaffold_31428 (22077-22169) | |
| 702-841, gnl|mm7|chr12 (3175480-3175387) | |
| 702-841, gnl|Mm7|chr12 (3175477-3175338) | |
| 702-841, gnl|monDom2|scaffold_1 (150618336-150618243) | |
| 702-841, gnl|oryCun1|scaffold_203679 (11304-11211) | |
| 702-841, gnl|panTro1|chr12 (27151666-27151759) | |
| 702-841, gnl|rheMac2|chr13 (26063823-26063916) | |
| 702-841, gnl|rn3|chr6_random (447880-447787) | |
| 702-841, gnl|tetNig1|chr14 (1856756-1856849) | |
| 702-841, gnl|xenTro1|scaffold_661 (268444-268537) | |
| 1032-1464, gnl|bosTau2|chr11 (54653517-54653952) | |
| 1032-1464, gnl|Hg17|chr2 (26269456-26269890) | |
| 1032-1464, gnl|Mm7|chr12 (3168343-3167910) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| tes (0.623441) | |
| sme (0.610874) | |
| liv (0.438853) | |
| ssp (0.271039) | |
| col (0.195008) | |
| ldo (0.194005) | |
| sag (0.182715) | |
| gul (0.177588) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| fco (0.157208) | |
| cag (0.151194) | |
| lun (0.150489) | |
| isp (0.150376) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| ecc (0.115035) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.623441) | |
| sme (0.610874) | |
| liv (0.438853) | |
| ssp (0.271039) | |
| col (0.195008) | |
| ldo (0.194005) | |
| sag (0.182715) | |
| gul (0.177588) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| fco (0.157208) | |
| cag (0.151194) | |
| lun (0.150489) | |
| isp (0.150376) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| ecc (0.115035) |