Non-Coding RNA Search

Ss1.1-Pig4-TMW8039K06.5

Sequence:


               
               AGACCCAAAGGAAGGGGAAGAGGAAGACCTCGCGGGCGGCCCAGAGGAAGCAAGAGGATG
AACAGCTGGGACAGGGGGCCGTCGCTTATCAAATTTAAAACTGGAACTGCAATACTTAAG
GACTATTACCTGAAGCACAAATTCCTAAACGAGCAAGACCTCGATGAACTCGTGAACAAA
TCACACATGGGCTACGAGCAGGTCCGAGAATGGTTTGCCGAAAGACAGAGAAGATCAGAG
TTAGGAATAGAATTATTTGAGGAAAACGAGGAGGAAGAGGAAGTTATCGACGATCAGGAA
GAGGATGAAGAAGAAACGGACGATAGTGACACTTGGGAACCCCCACGACATGTGAAACGA
AAGCTTTCTAAGTCGGATGACTGAAATCTTCCTAAAACGTTGGAGGAGAACAAATTCTTC
AATTCCAGATGTCTGATTTACTGTGAATGGGCCCAATCTTTGATGACACTGAAAACGTTT
TGGGGCATACACAATCTCAAAAATAGCATCCAATACCCAAAAGAAATGGAACTCAATGTT
GTGCCAAAGTTAAACTACTGCAGATGGCAGAAGTCCTGCATTGTACATAGAACACTAATT
AAAAAACAACTTGTAAAAATTCAAATTTTAATACAGTACATTTTTATTCTGATATGATGG
AGACATTCTGATTCTTAGACTTTCTGAGGGGGTTTAATGACCACTAGAGCTTGTCCTCAT
ATTTTGTTCAGCTTAATACTGTATGTCTCATAAGATGGGCCTTATTGCCTGTATTCTTTG
ATATGTGATTAATCTTATAGCTTTGAGTGACCAAACATTTTACAGACTAAAAATTCTTAG
AAACAGGAAAAAGTGAAATCTGATTTATCTCTACGTCTCATTTATCAGGCCCTGCACTAA
GATTAAGAGCTGTGCATGGGTTTATACAGAAAAAACAGCCTGTTGACCTATTGAAGCAAG
AAGATTTTGTGGTATCATTGGCGTTTAAAGATTGATCTTTCATGGAACACATTCGTAGAT
ACCACTCTTACTACTTGTAATACTCTGTTACTTTTTTTCATTAGAAACTGAATTAGCTTT
TATTAAACTGAACATAATCAGTACTGAAGAAGGGAAAGAAACTGGCATAAGCATTTGGAT
AGGGTGAAACTCTGAAATAAATATCGTACCAAAAATGTGAAAAGGAATCATATCGTAAAT
ATTTACTTAGTGTTTTCTTACAATCGTGTGGAAATCAGAAATGTTTGTGCAGGTGTCAGA
TCAGAATTTTCAAGAATTCTCTTTTGGTGACGTTCTACTTTGTATAACAATTTCAGCGAA
TAAAGAAAAAAAAATTCTGAGCTGATCACAATGAGTTAAAACGTAGCTTTTCTCTTATGA
ATGATGGGAGTATTAACTGTTAACTCTTGCCATATATCAGGAGACTGAAAGTTCCTACTC
ACAAACTTTGTAAAGACCGGTGCTGTTCATTCATGTTGAGAAGGACCCTTTCTTTTGTGA
CTCTAGGACCATTTTTCAAAATGTGCTTTCTTCATAGAAGAAATGTTCAGTTTCATTAGC
TTTGAATTTCAAAATGTTTTTCTGAATGACAAGATGTAGTGGGCTTGGCCAGTTTATTTT
ATCTAATTTAATGAATACTAAATATTAAGCTCTTGTTTTTACCTAAACGTTTGTCGGCTA
ATGAAAATGTTATGAAAAAGCCTTGACTATGCATGCTGCTTTCATTTTTATAAACTTTTT
ATTTTTTAACTATAGCTTTATTAGTAATTCCGAAATGCTGCAATTTAGCTGGTTTCTTCA
CTCAGACAGCTGGCTTTGTGGGTGGCTTTTTCATACTACTGTTAACTTTTTTTAAGAGAA
GCAATGTAAAGACTGTAACAATTTAATGCACTAAACTGTTCTTTCTTTTACACGTTTAAA
AACTTCTTAAAGCACTCTGTATTATAATGATTAAATTGCTCCCTTTTTTAAACCATTGCT
AATGTGGTCTGAGTTTTGTTTGACAGTAATTTTAATGTTTTCAAAATTTGAAATGTCAAG
TATTGGAAATGAAACCTTTGAATATATTTATATTATGTTTCCCTTGCAATATGTTAACTT
TGTACAGCTGTAAATAACTATTAGTAATTTTTCCCCTGTCTCTTTTATAGACTTGGCACT
TAATTCTGCTCTGATGTTTGCCAGCTTTTAAATATTTTTATTTGACAGAGCAAAGAACCC
TCCTCTCCTGGTTGATTGTGTCCTTGAATACAAAATAAAAGTTAGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACCCAAAGGAAGGGGAAGAGGAAGACCTCGCGGGCGGCCCAGAGGAAGCAAGAGGATG
AACAGCTGGGACAGGGGGCCGTCGCTTATCAAATTTAAAACTGGAACTGCAATACTTAAG
GACTATTACCTGAAGCACAAATTCCTAAACGAGCAAGACCTCGATGAACTCGTGAACAAA
TCACACATGGGCTACGAGCAGGTCCGAGAATGGTTTGCCGAAAGACAGAGAAGATCAGAG
TTAGGAATAGAATTATTTGAGGAAAACGAGGAGGAAGAGGAAGTTATCGACGATCAGGAA
GAGGATGAAGAAGAAACGGACGATAGTGACACTTGGGAACCCCCACGACATGTGAAACGA
AAGCTTTCTAAGTCGGATGACTGAAATCTTCCTAAAACGTTGGAGGAGAACAAATTCTTC
AATTCCAGATGTCTGATTTACTGTGAATGGGCCCAATCTTTGATGACACTGAAAACGTTT
TGGGGCATACACAATCTCAAAAATAGCATCCAATACCCAAAAGAAATGGAACTCAATGTT
GTGCCAAAGTTAAACTACTGCAGATGGCAGAAGTCCTGCATTGTACATAGAACACTAATT
AAAAAACAACTTGTAAAAATTCAAATTTTAATACAGTACATTTTTATTCTGATATGATGG
AGACATTCTGATTCTTAGACTTTCTGAGGGGGTTTAATGACCACTAGAGCTTGTCCTCAT
ATTTTGTTCAGCTTAATACTGTATGTCTCATAAGATGGGCCTTATTGCCTGTATTCTTTG
ATATGTGATTAATCTTATAGCTTTGAGTGACCAAACATTTTACAGACTAAAAATTCTTAG
AAACAGGAAAAAGTGAAATCTGATTTATCTCTACGTCTCATTTATCAGGCCCTGCACTAA
GATTAAGAGCTGTGCATGGGTTTATACAGAAAAAACAGCCTGTTGACCTATTGAAGCAAG
AAGATTTTGTGGTATCATTGGCGTTTAAAGATTGATCTTTCATGGAACACATTCGTAGAT
ACCACTCTTACTACTTGTAATACTCTGTTACTTTTTTTCATTAGAAACTGAATTAGCTTT
TATTAAACTGAACATAATCAGTACTGAAGAAGGGAAAGAAACTGGCATAAGCATTTGGAT
AGGGTGAAACTCTGAAATAAATATCGTACCAAAAATGTGAAAAGGAATCATATCGTAAAT
ATTTACTTAGTGTTTTCTTACAATCGTGTGGAAATCAGAAATGTTTGTGCAGGTGTCAGA
TCAGAATTTTCAAGAATTCTCTTTTGGTGACGTTCTACTTTGTATAACAATTTCAGCGAA
TAAAGAAAAAAAAATTCTGAGCTGATCACAATGAGTTAAAACGTAGCTTTTCTCTTATGA
ATGATGGGAGTATTAACTGTTAACTCTTGCCATATATCAGGAGACTGAAAGTTCCTACTC
ACAAACTTTGTAAAGACCGGTGCTGTTCATTCATGTTGAGAAGGACCCTTTCTTTTGTGA
CTCTAGGACCATTTTTCAAAATGTGCTTTCTTCATAGAAGAAATGTTCAGTTTCATTAGC
TTTGAATTTCAAAATGTTTTTCTGAATGACAAGATGTAGTGGGCTTGGCCAGTTTATTTT
ATCTAATTTAATGAATACTAAATATTAAGCTCTTGTTTTTACCTAAACGTTTGTCGGCTA
ATGAAAATGTTATGAAAAAGCCTTGACTATGCATGCTGCTTTCATTTTTATAAACTTTTT
ATTTTTTAACTATAGCTTTATTAGTAATTCCGAAATGCTGCAATTTAGCTGGTTTCTTCA
CTCAGACAGCTGGCTTTGTGGGTGGCTTTTTCATACTACTGTTAACTTTTTTTAAGAGAA
GCAATGTAAAGACTGTAACAATTTAATGCACTAAACTGTTCTTTCTTTTACACGTTTAAA
AACTTCTTAAAGCACTCTGTATTATAATGATTAAATTGCTCCCTTTTTTAAACCATTGCT
AATGTGGTCTGAGTTTTGTTTGACAGTAATTTTAATGTTTTCAAAATTTGAAATGTCAAG
TATTGGAAATGAAACCTTTGAATATATTTATATTATGTTTCCCTTGCAATATGTTAACTT
TGTACAGCTGTAAATAACTATTAGTAATTTTTCCCCTGTCTCTTTTATAGACTTGGCACT
TAATTCTGCTCTGATGTTTGCCAGCTTTTAAATATTTTTATTTGACAGAGCAAAGAACCC
TCCTCTCCTGGTTGATTGTGTCCTTGAATACAAAATAAAAGTTAGCAG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-387, gnl|bosTau2|chr14 (7877600-7877986)
               

               
               1-387, gnl|Hg17|chr8 (124335129-124334743)
               

               
               1-387, gnl|Mm7|chr15 (58117946-58117560)
               


               
               388-2268, gnl|bosTau2|chr14 (7880520-7882410)
               

               
               388-2268, gnl|Hg17|chr8 (124331741-124329891)
               

               
               388-2268, gnl|Mm7|chr15 (58114121-58112347)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-387, gnl|bosTau2|chr14 (7877600-7877986)
               

               
               1-387, gnl|Hg17|chr8 (124335129-124334743)
               

               
               1-387, gnl|Mm7|chr15 (58117946-58117560)
               


               
               388-2268, gnl|bosTau2|chr14 (7880520-7882410)
               

               
               388-2268, gnl|Hg17|chr8 (124331741-124329891)
               

               
               388-2268, gnl|Mm7|chr15 (58114121-58112347)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               kid (0.648677)
               

               
               pro (0.512033)
               

               
               cbl (0.45919)
               

               
               liv (0.438853)
               

               
               lin (0.436808)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               sug (0.127291)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.648677)
               

               
               pro (0.512033)
               

               
               cbl (0.45919)
               

               
               liv (0.438853)
               

               
               lin (0.436808)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               sug (0.127291)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	1-387, gnl\|bosTau2\|chr14 (7877600-7877986)
	1-387, gnl\|Hg17\|chr8 (124335129-124334743)
	1-387, gnl\|Mm7\|chr15 (58117946-58117560)

	388-2268, gnl\|bosTau2\|chr14 (7880520-7882410)
	388-2268, gnl\|Hg17\|chr8 (124331741-124329891)
	388-2268, gnl\|Mm7\|chr15 (58114121-58112347)

	kid (0.648677)
	pro (0.512033)
	cbl (0.45919)
	liv (0.438853)
	lin (0.436808)
	ret (0.3862)
	tra (0.369276)
	cbe (0.239234)
	ece (0.229305)
	fbs (0.175346)
	nco (0.161734)
	sug (0.127291)
	med (0.116252)
	jca (0.11396)
	cty (0.10408)
	ldo (0.0970026)