Non-Coding RNA Search

Ss1.1-Pig4-TMW8039K17.3

Sequence:


               
               TGAAATTGCTGTTCACACTGGAGTATTATATATGAATATATATATATTTGAGGCCCATGG
CCTGAAAAACCTTAGCATACAACTTGGTATCTTAGTCTTACTATGTACTTTTTGAAAGTA
TTCCTCACAAGAGAGAGAGTTACAAAAGACCTGTTTTATTCATGCCTTTTTTTAAAAGAA
TTCCCTATCTAGTTATATTGTAGTCTTTTTATTGCTGATTTTTTATTCCTGAATTTTTGC
TGCTCATGACCAATGTTAATACCACTGTGTTTTCCTTCTATTAAACCAGAAGTTCAAAGT
GTAATTGGCAACTCTCAAACTTTCTTTGTGGCACCTTTTATCCTTGGTGTTCCAAATCCC
AGATTAAGAAATTTTTTCAAGTGGCAAATAAGACACGGATCACACATTCCTTAAAATCAT
TTACCAACACTGTATGGCGTATCAGGATTAAAATGTGAAGCTGTCTTAAATAAATGCACT
TCTCTTGGCTCCTCACTGTCTGGTGAAGAGTCCAAGGTGACACCTCAACAAATGATGAGA
GAAAAATCAGCATGTATTGCCCCGATAGCACCTTCCCAATCCTGTCGCTTTTGACCATTG
TCTGTCCAATGGACACACCTCAAAAATACTACCAAATAGGTTCCTTATAAAGGTGAGAGG
TCTGGTCCCCATCTGAGGCTGCTAGCGCCTTGATGTGAAGGCATGCCTAGCGAACGGCAG
GAGACTTGAGAGCCAAGGGTAGGAGAGTTGCCCAAAAGCCTTCCCCTCTTTGGGGTACAG
AAATGCTCAGACAACTCAAAGGATCAGCTTCAGCTTTATCGAAGTCTTTAGTAAATGCTA
CGTGAGGTGTCCCTGTCCAGCTCTCTGGCACGTGAGTCCTGCGTGGAGACTTACCTCCTT
TTCCAGGGACTGTGCTGCTGGGAACTTTGGGCAAGTCACTTACCTCTTTGTGCCTCAATT
TCTGTAGACTATTTCTAACCTACCTCACTGAGGTGGTGTGAAGATTCACTAATGTATGTA
GCGTGTTTGTCAATCCACCAGTGAAAAGCACTATCTATCTGGATCACATTTTTGGATCAC
ATCAGCCAAACACAGTAAATGGCCAAATTAGATGCGTGCTGAAGACAATCAGTCACTGGG
TCTATATTAAACAGCAACCAGAGAAACAAAATGGCAAACAGTTTCTATTTTCAAGTTTCT
TTGCATATTTTTTTGGTGCAAAATCATTTATAAACTTTTTTTTTTCTAACACTAGTGTCT
ACAGCAGCATTTCAAAATAAATTCTGTTACCTTTTTCTGTATTAGGGATTTAAAGTCTAT
TTCTTATTGTATACCTGATTGAAGCAGTTCTTGGAGATGAATGTTTTAAATGTCTATATC
CAAAAATAAACATTTTGATGTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAATTGCTGTTCACACTGGAGTATTATATATGAATATATATATATTTGAGGCCCATGG
CCTGAAAAACCTTAGCATACAACTTGGTATCTTAGTCTTACTATGTACTTTTTGAAAGTA
TTCCTCACAAGAGAGAGAGTTACAAAAGACCTGTTTTATTCATGCCTTTTTTTAAAAGAA
TTCCCTATCTAGTTATATTGTAGTCTTTTTATTGCTGATTTTTTATTCCTGAATTTTTGC
TGCTCATGACCAATGTTAATACCACTGTGTTTTCCTTCTATTAAACCAGAAGTTCAAAGT
GTAATTGGCAACTCTCAAACTTTCTTTGTGGCACCTTTTATCCTTGGTGTTCCAAATCCC
AGATTAAGAAATTTTTTCAAGTGGCAAATAAGACACGGATCACACATTCCTTAAAATCAT
TTACCAACACTGTATGGCGTATCAGGATTAAAATGTGAAGCTGTCTTAAATAAATGCACT
TCTCTTGGCTCCTCACTGTCTGGTGAAGAGTCCAAGGTGACACCTCAACAAATGATGAGA
GAAAAATCAGCATGTATTGCCCCGATAGCACCTTCCCAATCCTGTCGCTTTTGACCATTG
TCTGTCCAATGGACACACCTCAAAAATACTACCAAATAGGTTCCTTATAAAGGTGAGAGG
TCTGGTCCCCATCTGAGGCTGCTAGCGCCTTGATGTGAAGGCATGCCTAGCGAACGGCAG
GAGACTTGAGAGCCAAGGGTAGGAGAGTTGCCCAAAAGCCTTCCCCTCTTTGGGGTACAG
AAATGCTCAGACAACTCAAAGGATCAGCTTCAGCTTTATCGAAGTCTTTAGTAAATGCTA
CGTGAGGTGTCCCTGTCCAGCTCTCTGGCACGTGAGTCCTGCGTGGAGACTTACCTCCTT
TTCCAGGGACTGTGCTGCTGGGAACTTTGGGCAAGTCACTTACCTCTTTGTGCCTCAATT
TCTGTAGACTATTTCTAACCTACCTCACTGAGGTGGTGTGAAGATTCACTAATGTATGTA
GCGTGTTTGTCAATCCACCAGTGAAAAGCACTATCTATCTGGATCACATTTTTGGATCAC
ATCAGCCAAACACAGTAAATGGCCAAATTAGATGCGTGCTGAAGACAATCAGTCACTGGG
TCTATATTAAACAGCAACCAGAGAAACAAAATGGCAAACAGTTTCTATTTTCAAGTTTCT
TTGCATATTTTTTTGGTGCAAAATCATTTATAAACTTTTTTTTTTCTAACACTAGTGTCT
ACAGCAGCATTTCAAAATAAATTCTGTTACCTTTTTCTGTATTAGGGATTTAAAGTCTAT
TTCTTATTGTATACCTGATTGAAGCAGTTCTTGGAGATGAATGTTTTAAATGTCTATATC
CAAAAATAAACATTTTGATGTAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1028-1147, - strand, RNAz p=0.94291

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1028-1147, - strand, RNAz p=0.94291

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1404, gnl|bosTau2|chr5 (15195720-15197124)
               

               
               1-1404, gnl|Hg17|chr12 (93202500-93203915)
               

               
               1-1404, gnl|Mm7|chr10 (94352934-94351576)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1404, gnl|bosTau2|chr5 (15195720-15197124)
               

               
               1-1404, gnl|Hg17|chr12 (93202500-93203915)
               

               
               1-1404, gnl|Mm7|chr10 (94352934-94351576)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               spl (0.429553)
               

               
               elu (0.385356)
               

               
               ova (0.258264)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.429553)
               

               
               elu (0.385356)
               

               
               ova (0.258264)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

	1-1404, gnl\|bosTau2\|chr5 (15195720-15197124)
	1-1404, gnl\|Hg17\|chr12 (93202500-93203915)
	1-1404, gnl\|Mm7\|chr10 (94352934-94351576)

	spl (0.429553)
	elu (0.385356)
	ova (0.258264)
	mgm (0.180343)
	rec (0.17307)
	mga (0.160205)
	fco (0.157208)
	lin (0.145603)
	lyg (0.133103)
	cbl (0.114797)
	spc (0.113366)