Non-Coding RNA Search

Ss1.1-Pig4-TMW8039K22.3

Sequence:


               
               ATCGGCCAAGAGAACCTGTCCTTCCCTATCTCCCACATCACCGCTAAATAATAAAGGCAT
ATTGAGTCTTCCACATCAAGCATCTCCAGTGTCACGCACCCCAAGCCTACCTGCTGTAGA
CACAAGCTATATTAACACATCCCTCATCCAAGACTACAGACATCCTTTCCACATGACACC
CATGCCTTATGACTTACAAGGATTAGATTTCTTTCCTTTCTTATCAGGAGACAATCAGCA
TTATAACACCTCCCTCCTTGCTGCTGCAGCAGCAGCAGTTTCAGATGATCAAGACCTCTT
ACACTCGTCTCGGTTTTTTCCATATACCTCCTCACAGATGTTTCTCGATCAGTTAAGTGC
AGGAGGCAGTACTTCTCTGCCAACCACCAATGGAAGCAGTAGTGGCAGTAACAGCAGCCT
GGTATCCTCCAACAGCTTAAGGGAGAGCCATAGCCACACCGTTGCAAACAGGAGCAGCAC
AGACACGGCATCCATCTTCGGCATCATACCAGACATTATTTCATTGGACTGATTCTCTTG
CCCCTGCTGCTCCCATCCCCATCCCAGATTAAATGAACTTGGCAGAAAGAAGAGAACTTT
GTGCTATGTTTTCTTATTCTGTTTAGAAAAGTACACAAGCGTGTTTTTTTTCCTTTTTTT
AGGGAAAAAATTAAAAGAAATGTACAGAGAACAAAACTATATTTTCAGTTTTACTTTTGT
ATATAAATCTAAGACTGCCTGTCTGATAAAACACTTGTTTAAAAAAAGAAAAAAAAAGGA
AAGAAAAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGGCCAAGAGAACCTGTCCTTCCCTATCTCCCACATCACCGCTAAATAATAAAGGCAT
ATTGAGTCTTCCACATCAAGCATCTCCAGTGTCACGCACCCCAAGCCTACCTGCTGTAGA
CACAAGCTATATTAACACATCCCTCATCCAAGACTACAGACATCCTTTCCACATGACACC
CATGCCTTATGACTTACAAGGATTAGATTTCTTTCCTTTCTTATCAGGAGACAATCAGCA
TTATAACACCTCCCTCCTTGCTGCTGCAGCAGCAGCAGTTTCAGATGATCAAGACCTCTT
ACACTCGTCTCGGTTTTTTCCATATACCTCCTCACAGATGTTTCTCGATCAGTTAAGTGC
AGGAGGCAGTACTTCTCTGCCAACCACCAATGGAAGCAGTAGTGGCAGTAACAGCAGCCT
GGTATCCTCCAACAGCTTAAGGGAGAGCCATAGCCACACCGTTGCAAACAGGAGCAGCAC
AGACACGGCATCCATCTTCGGCATCATACCAGACATTATTTCATTGGACTGATTCTCTTG
CCCCTGCTGCTCCCATCCCCATCCCAGATTAAATGAACTTGGCAGAAAGAAGAGAACTTT
GTGCTATGTTTTCTTATTCTGTTTAGAAAAGTACACAAGCGTGTTTTTTTTCCTTTTTTT
AGGGAAAAAATTAAAAGAAATGTACAGAGAACAAAACTATATTTTCAGTTTTACTTTTGT
ATATAAATCTAAGACTGCCTGTCTGATAAAACACTTGTTTAAAAAAAGAAAAAAAAAGGA
AAGAAAAGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61815834|ref|XP_586149.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61815834|ref|XP_586149.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               271-390, - strand, RNAz p=0.982758

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               271-390, - strand, RNAz p=0.982758

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               235-520, gnl|bosTau2|chr10 (9925638-9925352)
               

               
               235-520, gnl|Hg17|chr15 (66266927-66267314)
               

               
               235-520, gnl|Mm7|chr9 (62910619-62910242)
               


               
               615-791, gnl|bosTau2|chr10 (9925355-9925180)
               

               
               615-791, gnl|Hg17|chr15 (66267311-66267477)
               

               
               615-791, gnl|Mm7|chr9 (62910245-62910072)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               235-520, gnl|bosTau2|chr10 (9925638-9925352)
               

               
               235-520, gnl|Hg17|chr15 (66266927-66267314)
               

               
               235-520, gnl|Mm7|chr9 (62910619-62910242)
               


               
               615-791, gnl|bosTau2|chr10 (9925355-9925180)
               

               
               615-791, gnl|Hg17|chr15 (66267311-66267477)
               

               
               615-791, gnl|Mm7|chr9 (62910245-62910072)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               gul (0.355177)
               

               
               sag (0.182715)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               sag (0.182715)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               spc (0.113366)

	235-520, gnl\|bosTau2\|chr10 (9925638-9925352)
	235-520, gnl\|Hg17\|chr15 (66266927-66267314)
	235-520, gnl\|Mm7\|chr9 (62910619-62910242)

	615-791, gnl\|bosTau2\|chr10 (9925355-9925180)
	615-791, gnl\|Hg17\|chr15 (66267311-66267477)
	615-791, gnl\|Mm7\|chr9 (62910245-62910072)

	gul (0.355177)
	sag (0.182715)
	lin (0.145603)
	lnt (0.142308)
	csk (0.140746)
	ova (0.129132)
	ese (0.126502)
	spc (0.113366)