Ss1.1-Pig4-TMW8039L18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCCGCTGCGGGCAGAGGAAGACTCTCGACTCCTTCGGGAAAGCCAGACCCAAACCTCA GCAGCCGGCTCCGACCAGCGTGCAAGGAGCAGCGGCAGCCTAGACCTGGGCAGCGCCCAG CGGCTGCTGCGGGAAGCGGAGGGAGCCCTGCGCGGGCGCGGGCGGGGAGCGTGCGTCCGT TCGCACAGGCAGCGGGAGGAGGGGCGGCGCGAGCCATGGCCGGGGACAGCGAGCAGACCC TGCAGAACCACCAGCAGCCCAACGGCGGCGAACCCTTCCTGATCGGCGTCAGCGGAGGCA CGGCCAGCGGCAAGTCTTCCGTTTGTGCTAAGATTGTGCAGCTCCTGGGACAGAATGAGG TAGACTATCGCCAGAAGCAGGTGGTCATCCTGAGCCAGGACAGCTTCTATCGTGTCCTCA CTTCAGAGCAGAAGGCCAAAGCCCTGAAAGGCCAATTCAATTTTGATCACCCGGATGCCT TTGACAATGAACTCATCTTCAAAACACTCAAAGAAATCACCGAAGGGAAAACAGTCCAGA TTCCTGTGTATGACTTTGTCTCCCATTCCCGGAAGGAGGAGACGGTTACCGTCTACCCCG CAGACGTGGTGCTCTTCGAAGGGATCCTGGCCTTCTACTCCCAGGAGGTGCGAGACCTGT TCCAGATGAAGCTCTTCGTGGACACAGATGCAGACACCCGGCTCTCCCGCAGAGACAAAG AAATACGCTGATGTGATAATTCCCAGAGGCGCAGATAATCTAGTGGCCATCAACCTCATC GTGCAACACATCCAGGACATCCTGAACGGGGGGCTTTCCAAACGGCAGACCAATGGCTAT CTCAACGGCTATACCCCTTCGCGCAAGAGGCAGGCCTCGGAGTCCAGCAGCCGGCCGCAC TGACCCCCGCCCGTCTCCTGCAGACCCCCCCGGCCCTATCTTCAAGGAACAGGAGGGGAA GGGTCAGGAGGCACTGTTCATCTATACATATGGTTTCCTATGACATTGCTATATTTAAGA AAACACCATGGAGATGAAATGCCTTTTTTTTTTCTTTTTTTTCTTTTTTTTTTTGGTACT TTGGAGCGGCGAAATGAAGCAGAACTTGACCCCAAGCTTAAAAATGACAAACTGTGCCAA CTACTACTGGTGATGCCTAATTATGACTCCAACGTGTAACCAGTTATAAATACATGATAT ATATATATAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCCGCTGCGGGCAGAGGAAGACTCTCGACTCCTTCGGGAAAGCCAGACCCAAACCTCA GCAGCCGGCTCCGACCAGCGTGCAAGGAGCAGCGGCAGCCTAGACCTGGGCAGCGCCCAG CGGCTGCTGCGGGAAGCGGAGGGAGCCCTGCGCGGGCGCGGGCGGGGAGCGTGCGTCCGT TCGCACAGGCAGCGGGAGGAGGGGCGGCGCGAGCCATGGCCGGGGACAGCGAGCAGACCC TGCAGAACCACCAGCAGCCCAACGGCGGCGAACCCTTCCTGATCGGCGTCAGCGGAGGCA CGGCCAGCGGCAAGTCTTCCGTTTGTGCTAAGATTGTGCAGCTCCTGGGACAGAATGAGG TAGACTATCGCCAGAAGCAGGTGGTCATCCTGAGCCAGGACAGCTTCTATCGTGTCCTCA CTTCAGAGCAGAAGGCCAAAGCCCTGAAAGGCCAATTCAATTTTGATCACCCGGATGCCT TTGACAATGAACTCATCTTCAAAACACTCAAAGAAATCACCGAAGGGAAAACAGTCCAGA TTCCTGTGTATGACTTTGTCTCCCATTCCCGGAAGGAGGAGACGGTTACCGTCTACCCCG CAGACGTGGTGCTCTTCGAAGGGATCCTGGCCTTCTACTCCCAGGAGGTGCGAGACCTGT TCCAGATGAAGCTCTTCGTGGACACAGATGCAGACACCCGGCTCTCCCGCAGAGACAAAG AAATACGCTGATGTGATAATTCCCAGAGGCGCAGATAATCTAGTGGCCATCAACCTCATC GTGCAACACATCCAGGACATCCTGAACGGGGGGCTTTCCAAACGGCAGACCAATGGCTAT CTCAACGGCTATACCCCTTCGCGCAAGAGGCAGGCCTCGGAGTCCAGCAGCCGGCCGCAC TGACCCCCGCCCGTCTCCTGCAGACCCCCCCGGCCCTATCTTCAAGGAACAGGAGGGGAA GGGTCAGGAGGCACTGTTCATCTATACATATGGTTTCCTATGACATTGCTATATTTAAGA AAACACCATGGAGATGAAATGCCTTTTTTTTTTCTTTTTTTTCTTTTTTTTTTTGGTACT TTGGAGCGGCGAAATGAAGCAGAACTTGACCCCAAGCTTAAAAATGACAAACTGTGCCAA CTACTACTGGTGATGCCTAATTATGACTCCAACGTGTAACCAGTTATAAATACATGATAT ATATATATAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 930-1089, - strand, RNAz p=0.996523 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 930-1089, - strand, RNAz p=0.996523 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 313-472, gnl|bosTau2|chr11 (82097512-82097353) | |
| 313-472, gnl|canFam2|chr9 (55953742-55953579) | |
| 313-472, gnl|danRer3|chr21 (952488-952325) | |
| 313-472, gnl|dasNov1|scaffold_8624 (1298-1135) | |
| 313-472, gnl|echTel1|scaffold_320314 (121652-121815) | |
| 313-472, gnl|fr1|chrUn (59180587-59180424) | |
| 313-472, gnl|galGal2|chr17 (4103993-4103830) | |
| 313-472, gnl|hg17|chr9 (131435426-131435589) | |
| 313-472, gnl|Hg17|chr9 (131435588-131435429) | |
| 313-472, gnl|loxAfr1|scaffold_8305 (79539-79702) | |
| 313-472, gnl|mm7|chr2 (32266890-32267053) | |
| 313-472, gnl|Mm7|chr2 (32267052-32266893) | |
| 313-472, gnl|monDom2|scaffold_51 (7068962-7069125) | |
| 313-472, gnl|oryCun1|scaffold_191678 (23588-23751) | |
| 313-472, gnl|panTro1|chr11 (116314960-116315123) | |
| 313-472, gnl|rheMac2|chr15 (7157217-7157054) | |
| 313-472, gnl|rn3|chr3 (11268368-11268531) | |
| 313-472, gnl|tetNig1|chr4 (3231180-3231343) | |
| 313-472, gnl|xenTro1|scaffold_191 (656777-656940) | |
| 591-714, gnl|bosTau2|chr11 (82096222-82096099) | |
| 591-714, gnl|Hg17|chr9 (131434192-131434069) | |
| 591-714, gnl|Mm7|chr2 (32265711-32265588) | |
| 762-907, gnl|bosTau2|chr3 (3678302-3678157) | |
| 762-907, gnl|canFam2|chr38 (20479348-20479070) | |
| 762-907, gnl|danRer3|chrUn (141288835-141289099) | |
| 762-907, gnl|dasNov1|scaffold_36340 (38425-38705) | |
| 762-907, gnl|echTel1|scaffold_321047 (7689-7941) | |
| 762-907, gnl|fr1|chrUn (45737503-45737719) | |
| 762-907, gnl|galGal2|chr8 (5562530-5562803) | |
| 762-907, gnl|hg17|chr1 (162608548-162608826) | |
| 762-907, gnl|Hg17|chr1 (162608577-162608721) | |
| 762-907, gnl|loxAfr1|scaffold_61310 (7748-8040) | |
| 762-907, gnl|mm7|chr1 (167201752-167201456) | |
| 762-907, gnl|Mm7|chr1 (167201709-167201555) | |
| 762-907, gnl|monDom2|scaffold_16 (16368231-16368549) | |
| 762-907, gnl|oryCun1|scaffold_207029 (113127-112839) | |
| 762-907, gnl|panTro1|chr1 (144857233-144857511) | |
| 762-907, gnl|rheMac2|chr1 (195755815-195756093) | |
| 762-907, gnl|rn3|chr13 (82907606-82907315) | |
| 762-907, gnl|tetNig1|chr15 (3510327-3510547) | |
| 920-1210, gnl|bosTau2|chr3 (3678174-3677902) | |
| 920-1210, gnl|dasNov1|scaffold_32875 (41541-41345) | |
| 920-1210, gnl|Hg17|chr1 (162608705-162609001) | |
| 920-1210, gnl|hg17|chr3 (164402978-164403176) | |
| 920-1210, gnl|Mm7|chr1 (167201581-167201265) | |
| 920-1210, gnl|panTro1|chr2 (167663475-167663668) | |
| 920-1210, gnl|rheMac2|chr2 (124408799-124408600) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 313-472, gnl|bosTau2|chr11 (82097512-82097353) | |
| 313-472, gnl|canFam2|chr9 (55953742-55953579) | |
| 313-472, gnl|danRer3|chr21 (952488-952325) | |
| 313-472, gnl|dasNov1|scaffold_8624 (1298-1135) | |
| 313-472, gnl|echTel1|scaffold_320314 (121652-121815) | |
| 313-472, gnl|fr1|chrUn (59180587-59180424) | |
| 313-472, gnl|galGal2|chr17 (4103993-4103830) | |
| 313-472, gnl|hg17|chr9 (131435426-131435589) | |
| 313-472, gnl|Hg17|chr9 (131435588-131435429) | |
| 313-472, gnl|loxAfr1|scaffold_8305 (79539-79702) | |
| 313-472, gnl|mm7|chr2 (32266890-32267053) | |
| 313-472, gnl|Mm7|chr2 (32267052-32266893) | |
| 313-472, gnl|monDom2|scaffold_51 (7068962-7069125) | |
| 313-472, gnl|oryCun1|scaffold_191678 (23588-23751) | |
| 313-472, gnl|panTro1|chr11 (116314960-116315123) | |
| 313-472, gnl|rheMac2|chr15 (7157217-7157054) | |
| 313-472, gnl|rn3|chr3 (11268368-11268531) | |
| 313-472, gnl|tetNig1|chr4 (3231180-3231343) | |
| 313-472, gnl|xenTro1|scaffold_191 (656777-656940) | |
| 591-714, gnl|bosTau2|chr11 (82096222-82096099) | |
| 591-714, gnl|Hg17|chr9 (131434192-131434069) | |
| 591-714, gnl|Mm7|chr2 (32265711-32265588) | |
| 762-907, gnl|bosTau2|chr3 (3678302-3678157) | |
| 762-907, gnl|canFam2|chr38 (20479348-20479070) | |
| 762-907, gnl|danRer3|chrUn (141288835-141289099) | |
| 762-907, gnl|dasNov1|scaffold_36340 (38425-38705) | |
| 762-907, gnl|echTel1|scaffold_321047 (7689-7941) | |
| 762-907, gnl|fr1|chrUn (45737503-45737719) | |
| 762-907, gnl|galGal2|chr8 (5562530-5562803) | |
| 762-907, gnl|hg17|chr1 (162608548-162608826) | |
| 762-907, gnl|Hg17|chr1 (162608577-162608721) | |
| 762-907, gnl|loxAfr1|scaffold_61310 (7748-8040) | |
| 762-907, gnl|mm7|chr1 (167201752-167201456) | |
| 762-907, gnl|Mm7|chr1 (167201709-167201555) | |
| 762-907, gnl|monDom2|scaffold_16 (16368231-16368549) | |
| 762-907, gnl|oryCun1|scaffold_207029 (113127-112839) | |
| 762-907, gnl|panTro1|chr1 (144857233-144857511) | |
| 762-907, gnl|rheMac2|chr1 (195755815-195756093) | |
| 762-907, gnl|rn3|chr13 (82907606-82907315) | |
| 762-907, gnl|tetNig1|chr15 (3510327-3510547) | |
| 920-1210, gnl|bosTau2|chr3 (3678174-3677902) | |
| 920-1210, gnl|dasNov1|scaffold_32875 (41541-41345) | |
| 920-1210, gnl|Hg17|chr1 (162608705-162609001) | |
| 920-1210, gnl|hg17|chr3 (164402978-164403176) | |
| 920-1210, gnl|Mm7|chr1 (167201581-167201265) | |
| 920-1210, gnl|panTro1|chr2 (167663475-167663668) | |
| 920-1210, gnl|rheMac2|chr2 (124408799-124408600) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| fcc (0.197785) |