Ss1.1-Pig4-TMW8039M01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGACGCGGGGGGCTCCGGCAGTGGCGCAGACGAACGCGGGGCCCAGGATCCTGCCCCGG CCCCCAGCAAGGCCCCGGGCAGCGCTGGCCACTACGAACTGCCGTGGGTTGAAAAATACA GACCAGTAAAGTTGAATGAAATTGTCGGGAATGAAGACACCGTGAGCAGGCTGGAGGTCT TTGCACGAGAAGGGAACGTGCCCAACATCATCATTGCTGGCCCCCCAGGAACGGGCAAGA CTACAAGCATCCTGTGTTTGGCACGAGCCCTGCTGGGCCCAGCCCTCAAGGATGCTGTTC TGGAGCTCAATGCCTCAAACGACAGGGGGATTGACGTGGTGAGGAACAAAATCAAAATGT TTGCCCAGCAGAAGGTCACCCTTCCCAAAGGGCGACACAAGATCATCATCCTGGATGAAG CGGACAGCATGACTGATGGAGCCCAGCAGGCCTTGAGGAGAACCATGGAAATCTACTCCA AAACGACCCGATTTGCTCTTGCCTGTAATGCTTCGGATAAAATCATAGAGCCCATCCAGT CCCGGTGTGCCGTCCTCCGCTACACCAAGCTGACCGACGCCCAGATTCTTGCCAGGCTGC TGAACGTCATCGAGAAGGAGAAGGTGCCGTACACGGATGACGGCTTGGAAGCCATCATCT TCACCGCCCAGGGCGACATGAGGCAGGCCTTGAACAACTTGCAGTCTACCTTCTCGGGAT TTGGCTTCATCAACAGTGAGAATGTGTTCAAGGTCTGCGACGAGCCCCACCCCTTGCTGG TGAAGGAGATGATCCAGCACTGCGTGAGCGCCAACATCGACGAGGCCTACAAGATCCTCG CTCACCTGTGGCATCTTGGCTATTCCCCGGAAGACATCATTGGCAACATTTTTCGAGTGT GTAAAACCTTCCAGATGGCAGAATACTTGAAACTGGAGTTTATTAAGGAAATCGGATACA CTCATATGAGAGTAGCAGAAGGCGTGAACTCCCTTTTGCAGATGGCAGGGCTCCTGGCCA GGCTGTGTCAGAAGACAGTGGCCCCGGTGGCCAGTTAGAGCAGAGAACCAGCTGACGGGC TTGCAGGAGGAGCCTTTGCCGCTGAGAGGCCGAACTCACAGCCTTCCCATTCGGAAAAAG TATTGCGGGGGACCAGCCCTGGCGTATGGCCTCCTGGCCTTCACCTTGCTTCCAGCTAAG CCCCACTGCTCCGTGCGCGTCTCTCTCAGCCTCATGCTGTGGTGACCACGTGGAAAGGCC CTGAGACCCTCCAGGGCACAGCTCCTGATCCGTGCGTATGTTGGCATTTTACTAATAAAA CTGTCCAGTTTTGCCGGCAGTAACATGGCAGTGCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGACGCGGGGGGCTCCGGCAGTGGCGCAGACGAACGCGGGGCCCAGGATCCTGCCCCGG CCCCCAGCAAGGCCCCGGGCAGCGCTGGCCACTACGAACTGCCGTGGGTTGAAAAATACA GACCAGTAAAGTTGAATGAAATTGTCGGGAATGAAGACACCGTGAGCAGGCTGGAGGTCT TTGCACGAGAAGGGAACGTGCCCAACATCATCATTGCTGGCCCCCCAGGAACGGGCAAGA CTACAAGCATCCTGTGTTTGGCACGAGCCCTGCTGGGCCCAGCCCTCAAGGATGCTGTTC TGGAGCTCAATGCCTCAAACGACAGGGGGATTGACGTGGTGAGGAACAAAATCAAAATGT TTGCCCAGCAGAAGGTCACCCTTCCCAAAGGGCGACACAAGATCATCATCCTGGATGAAG CGGACAGCATGACTGATGGAGCCCAGCAGGCCTTGAGGAGAACCATGGAAATCTACTCCA AAACGACCCGATTTGCTCTTGCCTGTAATGCTTCGGATAAAATCATAGAGCCCATCCAGT CCCGGTGTGCCGTCCTCCGCTACACCAAGCTGACCGACGCCCAGATTCTTGCCAGGCTGC TGAACGTCATCGAGAAGGAGAAGGTGCCGTACACGGATGACGGCTTGGAAGCCATCATCT TCACCGCCCAGGGCGACATGAGGCAGGCCTTGAACAACTTGCAGTCTACCTTCTCGGGAT TTGGCTTCATCAACAGTGAGAATGTGTTCAAGGTCTGCGACGAGCCCCACCCCTTGCTGG TGAAGGAGATGATCCAGCACTGCGTGAGCGCCAACATCGACGAGGCCTACAAGATCCTCG CTCACCTGTGGCATCTTGGCTATTCCCCGGAAGACATCATTGGCAACATTTTTCGAGTGT GTAAAACCTTCCAGATGGCAGAATACTTGAAACTGGAGTTTATTAAGGAAATCGGATACA CTCATATGAGAGTAGCAGAAGGCGTGAACTCCCTTTTGCAGATGGCAGGGCTCCTGGCCA GGCTGTGTCAGAAGACAGTGGCCCCGGTGGCCAGTTAGAGCAGAGAACCAGCTGACGGGC TTGCAGGAGGAGCCTTTGCCGCTGAGAGGCCGAACTCACAGCCTTCCCATTCGGAAAAAG TATTGCGGGGGACCAGCCCTGGCGTATGGCCTCCTGGCCTTCACCTTGCTTCCAGCTAAG CCCCACTGCTCCGTGCGCGTCTCTCTCAGCCTCATGCTGTGGTGACCACGTGGAAAGGCC CTGAGACCCTCCAGGGCACAGCTCCTGATCCGTGCGTATGTTGGCATTTTACTAATAAAA CTGTCCAGTTTTGCCGGCAGTAACATGGCAGTGCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 211-326, - strand, RNAz p=0.567703 | |
| 946-1065, + strand, RNAz p=0.991813 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 211-326, - strand, RNAz p=0.567703 | |
| 946-1065, + strand, RNAz p=0.991813 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 211-326, gnl|bosTau2|chr25 (28346280-28346163) | |
| 211-326, gnl|canFam2|chr6 (9144779-9144680) | |
| 211-326, gnl|canFam2|chr6 (9144793-9144667) | |
| 211-326, gnl|danRer3|chrNA (92253814-92253914) | |
| 211-326, gnl|danRer3|chrNA (92253803-92253924) | |
| 211-326, gnl|dasNov1|scaffold_18470 (9170-9076) | |
| 211-326, gnl|dasNov1|scaffold_18470 (9177-9062) | |
| 211-326, gnl|fr1|chrUn (252339874-252339973) | |
| 211-326, gnl|fr1|chrUn (252339860-252339974) | |
| 211-326, gnl|galGal2|chr19 (2611063-2610964) | |
| 211-326, gnl|galGal2|chr19 (2611074-2610951) | |
| 211-326, gnl|hg17|chr2 (208827583-208827661) | |
| 211-326, gnl|hg17|chr7 (73107986-73108112) | |
| 211-326, gnl|Hg17|chr7 (73108109-73107992) | |
| 211-326, gnl|loxAfr1|scaffold_13474 (49998-50097) | |
| 211-326, gnl|loxAfr1|scaffold_13474 (49984-50110) | |
| 211-326, gnl|monDom2|scaffold_414 (34104-33981) | |
| 211-326, gnl|oryCun1|scaffold_84647 (8769-8716) | |
| 211-326, gnl|panTro1|chr13 (98891445-98891523) | |
| 211-326, gnl|panTro1|chr6 (74850378-74850504) | |
| 211-326, gnl|rheMac2|chr12 (72040277-72040355) | |
| 211-326, gnl|rheMac2|chr3 (51695474-51695600) | |
| 211-326, gnl|rn3|chr12 (23054810-23054909) | |
| 211-326, gnl|rn3|chr12 (23054801-23054922) | |
| 211-326, gnl|tetNig1|chrUn_random (71861763-71861862) | |
| 211-326, gnl|tetNig1|chrUn_random (30439956-30439833) | |
| 527-687, gnl|bosTau2|chr25 (28341232-28341072) | |
| 527-687, gnl|canFam2|chr6 (9153790-9153614) | |
| 527-687, gnl|danRer3|chrNA (92250126-92250290) | |
| 527-687, gnl|dasNov1|scaffold_18470 (16795-16615) | |
| 527-687, gnl|echTel1|scaffold_167779 (4382-4205) | |
| 527-687, gnl|fr1|chrUn (252339366-252339520) | |
| 527-687, gnl|galGal2|chr19 (2613425-2613246) | |
| 527-687, gnl|hg17|chr2 (208825996-208826177) | |
| 527-687, gnl|Hg17|chr7 (73099078-73098918) | |
| 527-687, gnl|mm7|chrUn_random (7276857-7276679) | |
| 527-687, gnl|Mm7|chrUn_random (7276700-7276860) | |
| 527-687, gnl|panTro1|chr13 (98889864-98890045) | |
| 527-687, gnl|rheMac2|chr12 (72038695-72038876) | |
| 527-687, gnl|rn3|chr12 (23051471-23051649) | |
| 527-687, gnl|tetNig1|chrUn_random (71861249-71861402) | |
| 946-1356, gnl|bosTau2|chr25 (28337802-28337404) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 211-326, gnl|bosTau2|chr25 (28346280-28346163) | |
| 211-326, gnl|canFam2|chr6 (9144779-9144680) | |
| 211-326, gnl|canFam2|chr6 (9144793-9144667) | |
| 211-326, gnl|danRer3|chrNA (92253814-92253914) | |
| 211-326, gnl|danRer3|chrNA (92253803-92253924) | |
| 211-326, gnl|dasNov1|scaffold_18470 (9170-9076) | |
| 211-326, gnl|dasNov1|scaffold_18470 (9177-9062) | |
| 211-326, gnl|fr1|chrUn (252339874-252339973) | |
| 211-326, gnl|fr1|chrUn (252339860-252339974) | |
| 211-326, gnl|galGal2|chr19 (2611063-2610964) | |
| 211-326, gnl|galGal2|chr19 (2611074-2610951) | |
| 211-326, gnl|hg17|chr2 (208827583-208827661) | |
| 211-326, gnl|hg17|chr7 (73107986-73108112) | |
| 211-326, gnl|Hg17|chr7 (73108109-73107992) | |
| 211-326, gnl|loxAfr1|scaffold_13474 (49998-50097) | |
| 211-326, gnl|loxAfr1|scaffold_13474 (49984-50110) | |
| 211-326, gnl|monDom2|scaffold_414 (34104-33981) | |
| 211-326, gnl|oryCun1|scaffold_84647 (8769-8716) | |
| 211-326, gnl|panTro1|chr13 (98891445-98891523) | |
| 211-326, gnl|panTro1|chr6 (74850378-74850504) | |
| 211-326, gnl|rheMac2|chr12 (72040277-72040355) | |
| 211-326, gnl|rheMac2|chr3 (51695474-51695600) | |
| 211-326, gnl|rn3|chr12 (23054810-23054909) | |
| 211-326, gnl|rn3|chr12 (23054801-23054922) | |
| 211-326, gnl|tetNig1|chrUn_random (71861763-71861862) | |
| 211-326, gnl|tetNig1|chrUn_random (30439956-30439833) | |
| 527-687, gnl|bosTau2|chr25 (28341232-28341072) | |
| 527-687, gnl|canFam2|chr6 (9153790-9153614) | |
| 527-687, gnl|danRer3|chrNA (92250126-92250290) | |
| 527-687, gnl|dasNov1|scaffold_18470 (16795-16615) | |
| 527-687, gnl|echTel1|scaffold_167779 (4382-4205) | |
| 527-687, gnl|fr1|chrUn (252339366-252339520) | |
| 527-687, gnl|galGal2|chr19 (2613425-2613246) | |
| 527-687, gnl|hg17|chr2 (208825996-208826177) | |
| 527-687, gnl|Hg17|chr7 (73099078-73098918) | |
| 527-687, gnl|mm7|chrUn_random (7276857-7276679) | |
| 527-687, gnl|Mm7|chrUn_random (7276700-7276860) | |
| 527-687, gnl|panTro1|chr13 (98889864-98890045) | |
| 527-687, gnl|rheMac2|chr12 (72038695-72038876) | |
| 527-687, gnl|rn3|chr12 (23051471-23051649) | |
| 527-687, gnl|tetNig1|chrUn_random (71861249-71861402) | |
| 946-1356, gnl|bosTau2|chr25 (28337802-28337404) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| fcc (0.39557) | |
| nlu (0.383362) | |
| ill (0.351185) | |
| cag (0.302389) | |
| spl (0.286369) | |
| ece (0.229305) | |
| hea (0.204499) | |
| jej (0.197844) | |
| nep (0.183925) | |
| fty (0.17584) | |
| cli (0.152812) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.39557) | |
| nlu (0.383362) | |
| ill (0.351185) | |
| cag (0.302389) | |
| spl (0.286369) | |
| ece (0.229305) | |
| hea (0.204499) | |
| jej (0.197844) | |
| nep (0.183925) | |
| fty (0.17584) | |
| cli (0.152812) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) |