Non-Coding RNA Search

Ss1.1-Pig4-TMW8039M13.5

Sequence:


               
               GGTTGCCGCCAGCGTGGCCAGGGCCTGGAGCTCCGCCTTCGACAGCCTGATCAGGAACCA
CATCTCTCAGGTGTTCAAGGAAACTTTCTCCCTGCATGTGCCCCACTTCCTGGCCAAGTA
CCCAGACTTTTTTGCCCTGAGCCTGGTGCTGCTGCTCATGGGAGTACTGGTTCTGGGAGT
TCACACGTCAGCCCTGGTTAACAAAATGTTCACAGGCATCAACCTCTTGGTACTCAGCTT
CATCATCCTCACTGGCTTCATTAAGGGAGACCTGCACAACTGGCAGCTCACAGAACAGGA
CTACAAACTGGCCACAGCTGGATCCAATGACACCTCTAGGCTGGGCCCTCTGGGTTCTGG
AGGGTTTGCGCCTTTTGGCTTTGGCGGGATTCTCCGAGGAGCAGCCACGTGTTTCTACGG
GTTCATTGGTTTTGATATCATTGCCACTGCAGGGGAAGAAGCTGTAAATCCTCAGCGTTC
CATCCCCTTGGGCATCGTGATCTCACTCTTCGTCTGCTTTTTGGCCTATTTTGGGGTCTC
CGCATCACTCACCCTCATGCTGCCCTATTATCAGATTCGTCCTGACAGCCCCCTGCCCCA
GGCTTTTCTCCAGGTTGGGTGGGCCCCCGCTGGATACATTGTGGCTGTTGGCACCCTCTG
TGGTCTTTTATGTAGCCTCCTGGGTGCCATGTTCTCTATGTCTCGAGTGACCTTCGCCAT
GGCAGATGATGGGCTCCTTTTCCGGGGACTTGCCTGGCTCCATGCCCGCACACGCACCCC
TCTGGTGGCCATCGTGGCTTCTGGAACTCTTGCAGGGATCATGGCCTTACTTTTCAAGTT
CAGTGACCTGGTGGACCTCATGTGCACAGGGACCCTGCTTGCTTACTCCCTGGTGGTTTT
TTCTGTCCTTGTCCTCAGATACCAGCCAGAACACAATATAAGCAAGAATGACAGAACACA
GGACACAACTGAAGTGGATCCTGAAGTGAAAGCAAGTCCTTTGGAATCTGTACCTGAAGG
GATAATCTCGAGGACTCTAAAGTGTCTGTGTAACCCTATCAGCCCCAACCCCACTCAGAA
ATCTGGCCAGATTGTCTATGGATGTGCCTTCCTGCTAGTCTTGAGGAGGGGTGTGACCCA
AGATCCGGACATATTTGGGAGTTCAACTTCCAGCTCATCCTTGCAGTATTTCTACTGACC
ATCCTGAGCCTGCTTCTGGCCCTGTGGCCCAGCCAAGTGTTCTCTGGAGACCCCGGGTTC
ACAGCCGGGGCTGTGCTGCTGCTGCTGCTCATTGCGGGGATCACCGCCATCATTTGGAGG
CAGCCCCAGAACCCCTCTCCTCTTCCCTTCAGGGTCCCTGCTCTGCCCGTGCTCCCAGTG
CTGAGCATCTTTGTGAATGTCTACCTGATGATGCAGATGTCCTCTGTGACCTGGGCCCAG
TTTGGCATCTGGAATGCCATGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTGCCGCCAGCGTGGCCAGGGCCTGGAGCTCCGCCTTCGACAGCCTGATCAGGAACCA
CATCTCTCAGGTGTTCAAGGAAACTTTCTCCCTGCATGTGCCCCACTTCCTGGCCAAGTA
CCCAGACTTTTTTGCCCTGAGCCTGGTGCTGCTGCTCATGGGAGTACTGGTTCTGGGAGT
TCACACGTCAGCCCTGGTTAACAAAATGTTCACAGGCATCAACCTCTTGGTACTCAGCTT
CATCATCCTCACTGGCTTCATTAAGGGAGACCTGCACAACTGGCAGCTCACAGAACAGGA
CTACAAACTGGCCACAGCTGGATCCAATGACACCTCTAGGCTGGGCCCTCTGGGTTCTGG
AGGGTTTGCGCCTTTTGGCTTTGGCGGGATTCTCCGAGGAGCAGCCACGTGTTTCTACGG
GTTCATTGGTTTTGATATCATTGCCACTGCAGGGGAAGAAGCTGTAAATCCTCAGCGTTC
CATCCCCTTGGGCATCGTGATCTCACTCTTCGTCTGCTTTTTGGCCTATTTTGGGGTCTC
CGCATCACTCACCCTCATGCTGCCCTATTATCAGATTCGTCCTGACAGCCCCCTGCCCCA
GGCTTTTCTCCAGGTTGGGTGGGCCCCCGCTGGATACATTGTGGCTGTTGGCACCCTCTG
TGGTCTTTTATGTAGCCTCCTGGGTGCCATGTTCTCTATGTCTCGAGTGACCTTCGCCAT
GGCAGATGATGGGCTCCTTTTCCGGGGACTTGCCTGGCTCCATGCCCGCACACGCACCCC
TCTGGTGGCCATCGTGGCTTCTGGAACTCTTGCAGGGATCATGGCCTTACTTTTCAAGTT
CAGTGACCTGGTGGACCTCATGTGCACAGGGACCCTGCTTGCTTACTCCCTGGTGGTTTT
TTCTGTCCTTGTCCTCAGATACCAGCCAGAACACAATATAAGCAAGAATGACAGAACACA
GGACACAACTGAAGTGGATCCTGAAGTGAAAGCAAGTCCTTTGGAATCTGTACCTGAAGG
GATAATCTCGAGGACTCTAAAGTGTCTGTGTAACCCTATCAGCCCCAACCCCACTCAGAA
ATCTGGCCAGATTGTCTATGGATGTGCCTTCCTGCTAGTCTTGAGGAGGGGTGTGACCCA
AGATCCGGACATATTTGGGAGTTCAACTTCCAGCTCATCCTTGCAGTATTTCTACTGACC
ATCCTGAGCCTGCTTCTGGCCCTGTGGCCCAGCCAAGTGTTCTCTGGAGACCCCGGGTTC
ACAGCCGGGGCTGTGCTGCTGCTGCTGCTCATTGCGGGGATCACCGCCATCATTTGGAGG
CAGCCCCAGAACCCCTCTCCTCTTCCCTTCAGGGTCCCTGCTCTGCCCGTGCTCCCAGTG
CTGAGCATCTTTGTGAATGTCTACCTGATGATGCAGATGTCCTCTGTGACCTGGGCCCAG
TTTGGCATCTGGAATGCCATGGGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61887831|ref|XP_604176.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61887831|ref|XP_604176.1|

Aligned organism(s): 21 entry(ies)

More info

Aligned organism(s): 21 entry(ies)

Help | Less info


               
               6-158, gnl|bosTau2|chr18 (52918248-52918096)
               

               
               6-158, gnl|Hg17|chrX (69931870-69931718)
               

               
               6-158, gnl|Mm7|chrUn_random (1717072-1717224)
               


               
               161-344, gnl|bosTau2|chr18 (52916864-52916681)
               

               
               161-344, gnl|Hg17|chrX (69931505-69931322)
               

               
               161-344, gnl|Mm7|chrUn_random (1718020-1718203)
               


               
               447-667, gnl|bosTau2|chr18 (52915991-52915771)
               

               
               447-667, gnl|Hg17|chrX (69930897-69930677)
               

               
               447-667, gnl|Mm7|chrUn_random (1720149-1720369)
               


               
               448-660, gnl|bosTau2|chr12 (15597336-15597548)
               

               
               448-660, gnl|Hg17|chr13 (28995630-28995418)
               

               
               448-660, gnl|Mm7|chr5 (147236869-147236657)
               


               
               674-816, gnl|bosTau2|chr18 (52915594-52915452)
               

               
               674-816, gnl|Hg17|chrX (69930496-69930354)
               

               
               674-816, gnl|Mm7|chrUn_random (1720533-1720675)
               


               
               915-1114, gnl|bosTau2|chr18 (52915129-52914930)
               

               
               915-1114, gnl|Hg17|chrX (69929916-69929750)
               

               
               915-1114, gnl|Mm7|chrUn_random (1720996-1721207)
               


               
               1125-1364, gnl|bosTau2|chr18 (52914809-52914556)
               

               
               1125-1364, gnl|Hg17|chrX (69929637-69929387)
               

               
               1125-1364, gnl|Mm7|chrUn_random (1721306-1721541)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-158, gnl|bosTau2|chr18 (52918248-52918096)
               

               
               6-158, gnl|Hg17|chrX (69931870-69931718)
               

               
               6-158, gnl|Mm7|chrUn_random (1717072-1717224)
               


               
               161-344, gnl|bosTau2|chr18 (52916864-52916681)
               

               
               161-344, gnl|Hg17|chrX (69931505-69931322)
               

               
               161-344, gnl|Mm7|chrUn_random (1718020-1718203)
               


               
               447-667, gnl|bosTau2|chr18 (52915991-52915771)
               

               
               447-667, gnl|Hg17|chrX (69930897-69930677)
               

               
               447-667, gnl|Mm7|chrUn_random (1720149-1720369)
               


               
               448-660, gnl|bosTau2|chr12 (15597336-15597548)
               

               
               448-660, gnl|Hg17|chr13 (28995630-28995418)
               

               
               448-660, gnl|Mm7|chr5 (147236869-147236657)
               


               
               674-816, gnl|bosTau2|chr18 (52915594-52915452)
               

               
               674-816, gnl|Hg17|chrX (69930496-69930354)
               

               
               674-816, gnl|Mm7|chrUn_random (1720533-1720675)
               


               
               915-1114, gnl|bosTau2|chr18 (52915129-52914930)
               

               
               915-1114, gnl|Hg17|chrX (69929916-69929750)
               

               
               915-1114, gnl|Mm7|chrUn_random (1720996-1721207)
               


               
               1125-1364, gnl|bosTau2|chr18 (52914809-52914556)
               

               
               1125-1364, gnl|Hg17|chrX (69929637-69929387)
               

               
               1125-1364, gnl|Mm7|chrUn_random (1721306-1721541)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	6-158, gnl\|bosTau2\|chr18 (52918248-52918096)
	6-158, gnl\|Hg17\|chrX (69931870-69931718)
	6-158, gnl\|Mm7\|chrUn_random (1717072-1717224)

	161-344, gnl\|bosTau2\|chr18 (52916864-52916681)
	161-344, gnl\|Hg17\|chrX (69931505-69931322)
	161-344, gnl\|Mm7\|chrUn_random (1718020-1718203)

	447-667, gnl\|bosTau2\|chr18 (52915991-52915771)
	447-667, gnl\|Hg17\|chrX (69930897-69930677)
	447-667, gnl\|Mm7\|chrUn_random (1720149-1720369)

	448-660, gnl\|bosTau2\|chr12 (15597336-15597548)
	448-660, gnl\|Hg17\|chr13 (28995630-28995418)
	448-660, gnl\|Mm7\|chr5 (147236869-147236657)

	674-816, gnl\|bosTau2\|chr18 (52915594-52915452)
	674-816, gnl\|Hg17\|chrX (69930496-69930354)
	674-816, gnl\|Mm7\|chrUn_random (1720533-1720675)

	915-1114, gnl\|bosTau2\|chr18 (52915129-52914930)
	915-1114, gnl\|Hg17\|chrX (69929916-69929750)
	915-1114, gnl\|Mm7\|chrUn_random (1720996-1721207)

	1125-1364, gnl\|bosTau2\|chr18 (52914809-52914556)
	1125-1364, gnl\|Hg17\|chrX (69929637-69929387)
	1125-1364, gnl\|Mm7\|chrUn_random (1721306-1721541)