Non-Coding RNA Search

Ss1.1-Pig4-TMW8039M19.5

Sequence:


               
               GACCCCTGCACTGTTTGTTGTTTTATCTTCTGTTGACAGCCTTTGCAGTGCTCTCCCACC
AAAGTGCTTACTTGTAAAGAAAACGAAACCATCCGTGTCCCCAGCAGCCTCAGTGCAGCA
ACAGAAGCCTTGGGAGAATGCTGGTGGTTCGGCCCCATGGCACAGCCAGCTTCCCTGTCT
GACCACTGATCCTGGATGACTTGAGGGTCTGGAAAGGCAGAGAACATCTCAGTGTTTCCC
ACCTCATTCTCCCAGATTCAACTCCCTTCCAAAGGATGGTTCCTTTCCTTGCACAGCCAT
ATCACAAAGGGCTTCCTGCTCAAGGGATAATGTTTTATTTAGTGAGAACTAAAGCTCTAC
TCTGGACTGCAGTCTCTATAGACTGCCATGTAAATGATAGCTTGTTTGAAGGGACACGAG
TCATTAATTTTCTGGCAGGTAGACTACAGTTTAAATTTAGGGCTACCTCAACCTTTAGCC
ACTACTCCTTTCCTTCCCGCAATACTCACAAAGAAAAATTGCTGCCTTCTAAGCTGCTGG
GTTAAAGCAGAGGCCACTTTTCAGATACACCCTTACTTGGTTATACAGTACCTGAGAGTT
TGACTGAGGCCAGGGACCTCCCCAGGAGGGCCAAAGGGCAGATCAGACCCATGGCAGGTA
GGTCCAGAGGATGGACCAGTCTCCAGCAGAAGATTGCTGACTAGTGGGTGGGCACAATTT
GCGCAAATAAGGTATAAAAAAGCCTACCTGTCCCACTTTGACCAATAGTCAGGAAAGACA
TAAAACCTATTCTTTCAAATAAGCCTATATGAAAATCAATTTACAAATGGACCACAACTC
CAGGGTGTTTTGTTTCTGTGCTGTGACTTCCTAATAAATTACTGCTAGAAAATTACTGTC
TAGTTGATGATGGGGCAAAATTACATTCAGCTCCTTGTCATGTAATAGAATTTGGAGGGT
GTTGCTTGAAATTTATGCCACCTGTACATTTGTCAGCTTAAAATTAAAATCAAGCTGGTA
TGAGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCCCTGCACTGTTTGTTGTTTTATCTTCTGTTGACAGCCTTTGCAGTGCTCTCCCACC
AAAGTGCTTACTTGTAAAGAAAACGAAACCATCCGTGTCCCCAGCAGCCTCAGTGCAGCA
ACAGAAGCCTTGGGAGAATGCTGGTGGTTCGGCCCCATGGCACAGCCAGCTTCCCTGTCT
GACCACTGATCCTGGATGACTTGAGGGTCTGGAAAGGCAGAGAACATCTCAGTGTTTCCC
ACCTCATTCTCCCAGATTCAACTCCCTTCCAAAGGATGGTTCCTTTCCTTGCACAGCCAT
ATCACAAAGGGCTTCCTGCTCAAGGGATAATGTTTTATTTAGTGAGAACTAAAGCTCTAC
TCTGGACTGCAGTCTCTATAGACTGCCATGTAAATGATAGCTTGTTTGAAGGGACACGAG
TCATTAATTTTCTGGCAGGTAGACTACAGTTTAAATTTAGGGCTACCTCAACCTTTAGCC
ACTACTCCTTTCCTTCCCGCAATACTCACAAAGAAAAATTGCTGCCTTCTAAGCTGCTGG
GTTAAAGCAGAGGCCACTTTTCAGATACACCCTTACTTGGTTATACAGTACCTGAGAGTT
TGACTGAGGCCAGGGACCTCCCCAGGAGGGCCAAAGGGCAGATCAGACCCATGGCAGGTA
GGTCCAGAGGATGGACCAGTCTCCAGCAGAAGATTGCTGACTAGTGGGTGGGCACAATTT
GCGCAAATAAGGTATAAAAAAGCCTACCTGTCCCACTTTGACCAATAGTCAGGAAAGACA
TAAAACCTATTCTTTCAAATAAGCCTATATGAAAATCAATTTACAAATGGACCACAACTC
CAGGGTGTTTTGTTTCTGTGCTGTGACTTCCTAATAAATTACTGCTAGAAAATTACTGTC
TAGTTGATGATGGGGCAAAATTACATTCAGCTCCTTGTCATGTAATAGAATTTGGAGGGT
GTTGCTTGAAATTTATGCCACCTGTACATTTGTCAGCTTAAAATTAAAATCAAGCTGGTA
TGAGAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1025, gnl|bosTau2|chr21 (1332097-1333114)
               

               
               1-1025, gnl|Hg17|chr15 (76360564-76361590)
               

               
               1-1025, gnl|Mm7|chr9 (54744729-54745641)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1025, gnl|bosTau2|chr21 (1332097-1333114)
               

               
               1-1025, gnl|Hg17|chr15 (76360564-76361590)
               

               
               1-1025, gnl|Mm7|chr9 (54744729-54745641)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               ece (0.45861)
               

               
               bfe (0.299715)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               cbr (0.255951)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               fco (0.157208)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               bfe (0.299715)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               cbr (0.255951)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               fco (0.157208)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	1-1025, gnl\|bosTau2\|chr21 (1332097-1333114)
	1-1025, gnl\|Hg17\|chr15 (76360564-76361590)
	1-1025, gnl\|Mm7\|chr9 (54744729-54745641)

	ece (0.45861)
	bfe (0.299715)
	fce (0.271592)
	ssp (0.271039)
	cbr (0.255951)
	spc (0.226732)
	hea (0.204499)
	fco (0.157208)
	hlv (0.139256)
	ese (0.126502)
	ebs (0.118301)
	med (0.116252)