Non-Coding RNA Search

Ss1.1-Pig4-TMW8039M23.3

Sequence:


               
               TTCCTGAGCAAGATGAAACATATTTAGAAGACAGTTTTTGTGTTGATGAAGAGGAGTCTT
GCAAAAGCCAGTCAAGTGACGAAGTCTGTGTTGATTTTAACCTAATAAGTGAAGATTCCT
TTGCAAGCGGGAGTAAAAAATATAAAACCCGTCGAGCAGTAAAACTAAAAGAAATGAAGA
AGAGACAAAATAGTGTGCATTCAAAAAAGAAATTATTCAGAATTATTTTACCGGCTGATT
CAAGTGAGGAGGAAAACCATGTCAGTGATATACGAGAATCCAATATTGTGGTTGACCCAA
GAACTGTTACCAAGTGTGAACAACAAAATCACTGTTTGCATTCAGTGCCTTCGGGGTCTT
CATTGCAGTCCAGGGACCACTCTAATCCAATTGCTAATCAATCGCCAAACCAGAGACAAC
AGACAGCACTTAATGTAAAGGTCACAGTTTCTGATGTTTCAGACTCCAAACCTCAGAGCC
ATAATGACATTGAATCTACTTTATCATCATTGACTACTGTTGATTCACAGAAAGACTGTA
GAAAACATCCAATTCAGTCGAAGGATGCTGGTGCTCTGGAGGATTCTGGCACTTCAGCAG
CATTCTGTTCTAACTCTCGACCACATTTGGCTGACACACATGCTTCTCCTAGACTTCCAC
AGGAAGGCCAAAGAACTTGTATTCTTGTAGATAGTCGTGAAATCACTTCTGGTTCAGAAG
TAATTTCTTCCCTAAGAGCAATTCATGGCTTTCAAGTAGAGGTTTGTCCTCTTAATGGTT
GTGATTACATTGTGAGTAACCGCATGGTGGTGGAAAGAAAGTCTCAATCTGAGATGTTAA
CTTGTATCAACAAGAATAAGCTCATTGATCAGATCCAGTACCTACAGAGCATGTTTGAAA
GAATATGTGTGATTGTGGAAAAGGACAGAGAAAAAACAGGAGACACATCCAGGATGTTAA
GGAGAACAAAGAGCTATGACAGCCTGCTGACTACCTTAATTGGTGCTGGAATCCGAATTC
TTTTCAGTTCCTGCCAAGAAGAAACTGCTGATTTGTTAAAGGAATTGTCTTTGGTGGAAC
AAAGAAAGAATGTTGGTATCCATGTTCCGACAGTTGTGAACAGTAATAAATGTGAGGCAC
TTCAATTTTATCTGAGTATTCCCAACATAAGCTATATAACCGCATTGAATATGTGTCACC
AGTTTTCATCTGTGAAAAAGATGACAAACAGCTCACCTCAAGAAATCTCTATGTATGCAC
AAGTAACTCATCAAAAGGCCGAGGAGATCTATAGATATATTCACTATATATGTGACATAC
AAATGTTACCAAATGATTTTAACCAAGGTAATTTCATATCTGATGCATGATCAGACTGCT
TCAGGGTGGGTTATCAGAGAACTCTCACAATACTAAATGCACTTCAATAATCATTGCTGT
GGTTTGTGATTATCACTTTAAAATATATAAATAAGAATATTTTCATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTGAGCAAGATGAAACATATTTAGAAGACAGTTTTTGTGTTGATGAAGAGGAGTCTT
GCAAAAGCCAGTCAAGTGACGAAGTCTGTGTTGATTTTAACCTAATAAGTGAAGATTCCT
TTGCAAGCGGGAGTAAAAAATATAAAACCCGTCGAGCAGTAAAACTAAAAGAAATGAAGA
AGAGACAAAATAGTGTGCATTCAAAAAAGAAATTATTCAGAATTATTTTACCGGCTGATT
CAAGTGAGGAGGAAAACCATGTCAGTGATATACGAGAATCCAATATTGTGGTTGACCCAA
GAACTGTTACCAAGTGTGAACAACAAAATCACTGTTTGCATTCAGTGCCTTCGGGGTCTT
CATTGCAGTCCAGGGACCACTCTAATCCAATTGCTAATCAATCGCCAAACCAGAGACAAC
AGACAGCACTTAATGTAAAGGTCACAGTTTCTGATGTTTCAGACTCCAAACCTCAGAGCC
ATAATGACATTGAATCTACTTTATCATCATTGACTACTGTTGATTCACAGAAAGACTGTA
GAAAACATCCAATTCAGTCGAAGGATGCTGGTGCTCTGGAGGATTCTGGCACTTCAGCAG
CATTCTGTTCTAACTCTCGACCACATTTGGCTGACACACATGCTTCTCCTAGACTTCCAC
AGGAAGGCCAAAGAACTTGTATTCTTGTAGATAGTCGTGAAATCACTTCTGGTTCAGAAG
TAATTTCTTCCCTAAGAGCAATTCATGGCTTTCAAGTAGAGGTTTGTCCTCTTAATGGTT
GTGATTACATTGTGAGTAACCGCATGGTGGTGGAAAGAAAGTCTCAATCTGAGATGTTAA
CTTGTATCAACAAGAATAAGCTCATTGATCAGATCCAGTACCTACAGAGCATGTTTGAAA
GAATATGTGTGATTGTGGAAAAGGACAGAGAAAAAACAGGAGACACATCCAGGATGTTAA
GGAGAACAAAGAGCTATGACAGCCTGCTGACTACCTTAATTGGTGCTGGAATCCGAATTC
TTTTCAGTTCCTGCCAAGAAGAAACTGCTGATTTGTTAAAGGAATTGTCTTTGGTGGAAC
AAAGAAAGAATGTTGGTATCCATGTTCCGACAGTTGTGAACAGTAATAAATGTGAGGCAC
TTCAATTTTATCTGAGTATTCCCAACATAAGCTATATAACCGCATTGAATATGTGTCACC
AGTTTTCATCTGTGAAAAAGATGACAAACAGCTCACCTCAAGAAATCTCTATGTATGCAC
AAGTAACTCATCAAAAGGCCGAGGAGATCTATAGATATATTCACTATATATGTGACATAC
AAATGTTACCAAATGATTTTAACCAAGGTAATTTCATATCTGATGCATGATCAGACTGCT
TCAGGGTGGGTTATCAGAGAACTCTCACAATACTAAATGCACTTCAATAATCATTGCTGT
GGTTTGTGATTATCACTTTAAAATATATAAATAAGAATATTTTCATAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|60552150|gb|AAH91339.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|60552150|gb|AAH91339.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               641-940, - strand, RNAz p=0.80146

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               641-940, - strand, RNAz p=0.80146

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-307, gnl|bosTau2|chr21 (37283332-37283638)
               

               
               1-307, gnl|Hg17|chr14 (44727756-44728098)
               

               
               1-307, gnl|Mm7|chr12 (63060621-63060963)
               


               
               562-940, gnl|bosTau2|chr21 (37285132-37285510)
               

               
               562-940, gnl|Hg17|chr14 (44735123-44735501)
               

               
               562-940, gnl|Mm7|chr12 (63063901-63064277)
               


               
               1229-1481, gnl|bosTau2|chr21 (37287758-37288003)
               

               
               1229-1481, gnl|Hg17|chr14 (44738820-44739061)
               

               
               1229-1481, gnl|Mm7|chr12 (63069362-63069600)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-307, gnl|bosTau2|chr21 (37283332-37283638)
               

               
               1-307, gnl|Hg17|chr14 (44727756-44728098)
               

               
               1-307, gnl|Mm7|chr12 (63060621-63060963)
               


               
               562-940, gnl|bosTau2|chr21 (37285132-37285510)
               

               
               562-940, gnl|Hg17|chr14 (44735123-44735501)
               

               
               562-940, gnl|Mm7|chr12 (63063901-63064277)
               


               
               1229-1481, gnl|bosTau2|chr21 (37287758-37288003)
               

               
               1229-1481, gnl|Hg17|chr14 (44738820-44739061)
               

               
               1229-1481, gnl|Mm7|chr12 (63069362-63069600)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tra (0.123092)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	1-307, gnl\|bosTau2\|chr21 (37283332-37283638)
	1-307, gnl\|Hg17\|chr14 (44727756-44728098)
	1-307, gnl\|Mm7\|chr12 (63060621-63060963)

	562-940, gnl\|bosTau2\|chr21 (37285132-37285510)
	562-940, gnl\|Hg17\|chr14 (44735123-44735501)
	562-940, gnl\|Mm7\|chr12 (63063901-63064277)

	1229-1481, gnl\|bosTau2\|chr21 (37287758-37288003)
	1229-1481, gnl\|Hg17\|chr14 (44738820-44739061)
	1229-1481, gnl\|Mm7\|chr12 (63069362-63069600)