Non-Coding RNA Search

Ss1.1-Pig4-TMW8039N07.5

Sequence:


               
               CCAGAATCATCATCTTTGAAGTACACTGAAGCAAAGAGGGGCATTCCAGAGGAAAGCAGC
TTGGAACAAATCACTGAAATCGAAAGCCTGGCTGATGATGTGGTTTCACCAGCTGCTATT
CAGCAGGATAACTGCCCTCAGGAAACTGACATGTCCTGCAGTTACACTGCGCAGGATCCT
ACAAAAAATGAGCTTCTCGATGATGAGACATCCATCCTCTACCTACAAGATCAGCTGTCA
GAACTTTTAAAAGAGTTTCCCTATGGTATTGAACCTGTGAACATGCATGAGGGTTGTGCG
GTCCAACAAATGGCAGACCCCATTTCAAAACCTCAAACTTGTGAGCACACTGGTTGTGAC
TCCAAAGACTCAACAGACCAGATACAAATTACAATACTAAACTCAGAGCAAATGAAAGAA
TTATTTCCTGAACAGGATGGTCCACCCAATGAGGTAGACAGATTGACAGAACTTCAGGAA
GAAAAGCCTGTCACAAAAGAAGGGAACCAGTGTGACCCACAGGCACGTACCATTGAAGAA
AGTTGTGAGTCTGTTGTACTGGATTCGGAAAAAGATGATGTCCGTTGCTGTGCCTTGGGG
TGGCTCTCTATGGTTTATGAAGGAGTACCTCAGTGCCAGTGTAATTCCATTAAGAACTCA
GCTTCAAAGGAAGAAAAAGGGAAAGATCCGTGTTCTCTGGAGGCCAACGCCAACAGTTAT
AAACGAGGCGAGAGGACCTCTGATGGAGATGACTCTGTCACATTTGAGAATCCTCCAGAT
AATCAGAAACTTCCTCTGACTTTTCCAGTTGAGGAAAAACATTTTCCTGAAACAGAGGGA
GGCCGGAACATAAATGATAAATCAGAAACAGAACAGAACAGCTCACTAAGGACAGAGCAA
GAATTACCTGGTCAGTTTTTATGTAAAGGTGGTAAAAGACGAGATCCATTGCAGAGACAC
AAAAAGAAACCCCTGCAATTTCATGAGGTCACTTTTCAGTCCACTAATAAAACTATAAAA
ATTTGTCAAGAGAGCTTGCAGAGGAAGCTTATGGCACAAAATTTACGTCCACTCAAACCA
AAGATGGGGTTTTTGACGAGTAAAAATAAAGATTTGCATGTGAAAAATGCTTCTTTAGTA
CAGTCAATAACACCAGAAAAGAGAAAATTGAAAGCAGCTGGCTCTAAACACAAAGTTTTG
GAAAAAAGGAAGTTGGATGATGGGAGCATACATGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGAATCATCATCTTTGAAGTACACTGAAGCAAAGAGGGGCATTCCAGAGGAAAGCAGC
TTGGAACAAATCACTGAAATCGAAAGCCTGGCTGATGATGTGGTTTCACCAGCTGCTATT
CAGCAGGATAACTGCCCTCAGGAAACTGACATGTCCTGCAGTTACACTGCGCAGGATCCT
ACAAAAAATGAGCTTCTCGATGATGAGACATCCATCCTCTACCTACAAGATCAGCTGTCA
GAACTTTTAAAAGAGTTTCCCTATGGTATTGAACCTGTGAACATGCATGAGGGTTGTGCG
GTCCAACAAATGGCAGACCCCATTTCAAAACCTCAAACTTGTGAGCACACTGGTTGTGAC
TCCAAAGACTCAACAGACCAGATACAAATTACAATACTAAACTCAGAGCAAATGAAAGAA
TTATTTCCTGAACAGGATGGTCCACCCAATGAGGTAGACAGATTGACAGAACTTCAGGAA
GAAAAGCCTGTCACAAAAGAAGGGAACCAGTGTGACCCACAGGCACGTACCATTGAAGAA
AGTTGTGAGTCTGTTGTACTGGATTCGGAAAAAGATGATGTCCGTTGCTGTGCCTTGGGG
TGGCTCTCTATGGTTTATGAAGGAGTACCTCAGTGCCAGTGTAATTCCATTAAGAACTCA
GCTTCAAAGGAAGAAAAAGGGAAAGATCCGTGTTCTCTGGAGGCCAACGCCAACAGTTAT
AAACGAGGCGAGAGGACCTCTGATGGAGATGACTCTGTCACATTTGAGAATCCTCCAGAT
AATCAGAAACTTCCTCTGACTTTTCCAGTTGAGGAAAAACATTTTCCTGAAACAGAGGGA
GGCCGGAACATAAATGATAAATCAGAAACAGAACAGAACAGCTCACTAAGGACAGAGCAA
GAATTACCTGGTCAGTTTTTATGTAAAGGTGGTAAAAGACGAGATCCATTGCAGAGACAC
AAAAAGAAACCCCTGCAATTTCATGAGGTCACTTTTCAGTCCACTAATAAAACTATAAAA
ATTTGTCAAGAGAGCTTGCAGAGGAAGCTTATGGCACAAAATTTACGTCCACTCAAACCA
AAGATGGGGTTTTTGACGAGTAAAAATAAAGATTTGCATGTGAAAAATGCTTCTTTAGTA
CAGTCAATAACACCAGAAAAGAGAAAATTGAAAGCAGCTGGCTCTAAACACAAAGTTTTG
GAAAAAAGGAAGTTGGATGATGGGAGCATACATGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-199, + strand, RNAz p=0.987306

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-199, + strand, RNAz p=0.987306

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1236, gnl|bosTau2|chr5 (47913987-47912749)
               

               
               1-1236, gnl|Hg17|chr12 (32028091-32029308)
               

               
               1-1236, gnl|Mm7|chr6 (149406009-149407292)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1236, gnl|bosTau2|chr5 (47913987-47912749)
               

               
               1-1236, gnl|Hg17|chr12 (32028091-32029308)
               

               
               1-1236, gnl|Mm7|chr6 (149406009-149407292)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (0.150489)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	1-1236, gnl\|bosTau2\|chr5 (47913987-47912749)
	1-1236, gnl\|Hg17\|chr12 (32028091-32029308)
	1-1236, gnl\|Mm7\|chr6 (149406009-149407292)