Non-Coding RNA Search

Ss1.1-Pig4-TMW8039N13.5

Sequence:


               
               GCGGCTCGAGCCGGGTCACACTAACGCCGCCGTTTCCTCCAGCCGCTTGGTTCTCCTGTG
AGTCTGGACCAGTCCCCATGTCCTGCTGTGGGGCCTCTGCAGCCTTTGGACTTTAAGACT
GCTGAGAGACACTGCAATCCAGTCACATAAGCATAATAAAGAAATATTGGTCCTCATGGA
AGAAGAACAAGATTTGCCAGAGCAACCAGTGAAAAAAGCCAAGATGCAGGAATCAGGAGA
GCAAACTTTAAGTCAAGTAAGCAACCCTGAAGTCAATGATCAGAAACCCGAAACTTCAAG
CCTTGCTTCAAACCTTACCATGTCAGAGGAAATTATGACATGCACCGATTACATCCCTCG
CTCATCCAATGATTATACCTCACAAATGTATTCTACGAAACCTTATGCACATATCCTCTC
AGTTCCTGTTTCGGAAACTGCTTATCCTGGGCAGACTCAGTACCCAACACTGCAGCAGTC
TCAATCCTATGCTGTCTACCCTCAGGCAACCCAAACGTATGGACTACCTCCTTTCGGTGC
ATTGTGGCCAGGTATGAAACCTGAAAGTGGTTTAATTCAGACTCCATCTCCAAGTCAACA
CAGTGTTCTTACCTGCACTACAGGGTTAACCACAAGCCAGCCAAGCCCAGCACATTATTC
TTATCCCATTCAAGCTTCAAGCACAAATACCACCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGCCGGGTCACACTAACGCCGCCGTTTCCTCCAGCCGCTTGGTTCTCCTGTG
AGTCTGGACCAGTCCCCATGTCCTGCTGTGGGGCCTCTGCAGCCTTTGGACTTTAAGACT
GCTGAGAGACACTGCAATCCAGTCACATAAGCATAATAAAGAAATATTGGTCCTCATGGA
AGAAGAACAAGATTTGCCAGAGCAACCAGTGAAAAAAGCCAAGATGCAGGAATCAGGAGA
GCAAACTTTAAGTCAAGTAAGCAACCCTGAAGTCAATGATCAGAAACCCGAAACTTCAAG
CCTTGCTTCAAACCTTACCATGTCAGAGGAAATTATGACATGCACCGATTACATCCCTCG
CTCATCCAATGATTATACCTCACAAATGTATTCTACGAAACCTTATGCACATATCCTCTC
AGTTCCTGTTTCGGAAACTGCTTATCCTGGGCAGACTCAGTACCCAACACTGCAGCAGTC
TCAATCCTATGCTGTCTACCCTCAGGCAACCCAAACGTATGGACTACCTCCTTTCGGTGC
ATTGTGGCCAGGTATGAAACCTGAAAGTGGTTTAATTCAGACTCCATCTCCAAGTCAACA
CAGTGTTCTTACCTGCACTACAGGGTTAACCACAAGCCAGCCAAGCCCAGCACATTATTC
TTATCCCATTCAAGCTTCAAGCACAAATACCACCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61880331|ref|XP_614890.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61880331|ref|XP_614890.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-278, - strand, RNAz p=0.734258

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-278, - strand, RNAz p=0.734258

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               41-325, gnl|bosTau2|chr5 (52603373-52603106)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-325, gnl|bosTau2|chr5 (52603373-52603106)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)