Non-Coding RNA Search

Ss1.1-Pig4-TMW8039O09.5

Sequence:


               
               GTTTCTTCTTCGACGTGGGCTGCAACAAGTACGGAGTGTTCCTGCGCGTGAGCGAGGTAA
AGCCTTCCTACCGCAACGCCATCACCGTCCCCTTCAAGGCGTGGGGCAAGTTCGGGGGCG
CCTTTTGCCGGTATGCGGATGAGATGAAAGAGATCCAGGAGCGGCAGAGGGATAAGCTTT
ATGAGCGACGCGGCGGAGACGAGTCGGAGGGAGAGGAGGTGGATGAGGACTGAAACGCGC
AGCTTTCCCTACGGGCCTCTCCACCCCACCACCGTCCCCTTGGCTAGAGAGCTCCCCTTC
CTGTTCATCCCCCAGTGAGCTAGAGGAGGGGGAGCGAGGGAGGCCCCAGAGGGAGAAAAC
AAAATTTAAAGTAATATAGTTAATTAAGAGAAGTAACCAGAAGAGAACCGTCACGGACAC
TTAGCGAAAAGCAGTGAAGTTCCAAGATACTGACAGCAACCTGCAAAGAGAGGAGAGAAG
ACAAAACAACAGCGTCTCCTCACCTGAGCAAAACAGTCTCAGCTTCTGTTGCTTCCCAGC
TGAGGTTCCTGAACCCTGGGTGGGTCAGATCCTTGCACATTGGCCAAGGAACACCTTCGA
GTTACCCAGACCCATTGCTGACAGTTGAGTTTGTGTTGTACCTGGGTAACCTGTTGGGAA
GATTTTTCCAGACCACACTTTGGCCGTGTCTATCCCTTCACCTCCGTTGAAGTCAGCGTT
TTGAACCTAGATCTTCATGGAATTCTTGTGAAGAGAGAGGCCTTTTCAGTTACCCAGTTC
TGAGGGTACACGTTTCCTAAAGAGGAGCAACTAAGTAACCACAGACAGGGCAAAATCATT
TCGTGAAGCCACCAGGGAATACAGAAACAAACTGGGTCCATTTTGTTTCACATGGTTTTG
CATGGGACCTGAACCAAGGCCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCTTCTTCGACGTGGGCTGCAACAAGTACGGAGTGTTCCTGCGCGTGAGCGAGGTAA
AGCCTTCCTACCGCAACGCCATCACCGTCCCCTTCAAGGCGTGGGGCAAGTTCGGGGGCG
CCTTTTGCCGGTATGCGGATGAGATGAAAGAGATCCAGGAGCGGCAGAGGGATAAGCTTT
ATGAGCGACGCGGCGGAGACGAGTCGGAGGGAGAGGAGGTGGATGAGGACTGAAACGCGC
AGCTTTCCCTACGGGCCTCTCCACCCCACCACCGTCCCCTTGGCTAGAGAGCTCCCCTTC
CTGTTCATCCCCCAGTGAGCTAGAGGAGGGGGAGCGAGGGAGGCCCCAGAGGGAGAAAAC
AAAATTTAAAGTAATATAGTTAATTAAGAGAAGTAACCAGAAGAGAACCGTCACGGACAC
TTAGCGAAAAGCAGTGAAGTTCCAAGATACTGACAGCAACCTGCAAAGAGAGGAGAGAAG
ACAAAACAACAGCGTCTCCTCACCTGAGCAAAACAGTCTCAGCTTCTGTTGCTTCCCAGC
TGAGGTTCCTGAACCCTGGGTGGGTCAGATCCTTGCACATTGGCCAAGGAACACCTTCGA
GTTACCCAGACCCATTGCTGACAGTTGAGTTTGTGTTGTACCTGGGTAACCTGTTGGGAA
GATTTTTCCAGACCACACTTTGGCCGTGTCTATCCCTTCACCTCCGTTGAAGTCAGCGTT
TTGAACCTAGATCTTCATGGAATTCTTGTGAAGAGAGAGGCCTTTTCAGTTACCCAGTTC
TGAGGGTACACGTTTCCTAAAGAGGAGCAACTAAGTAACCACAGACAGGGCAAAATCATT
TCGTGAAGCCACCAGGGAATACAGAAACAAACTGGGTCCATTTTGTTTCACATGGTTTTG
CATGGGACCTGAACCAAGGCCCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BQK8_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BQK8_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               262-380, + strand, RNAz p=0.991024

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               262-380, + strand, RNAz p=0.991024

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_033224, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_033224, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-922, gnl|bosTau2|chr4 (43136406-43135485)
               

               
               1-922, gnl|Hg17|chr7 (44697496-44696564)
               

               
               1-922, gnl|Mm7|chr11 (6427162-6426218)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-922, gnl|bosTau2|chr4 (43136406-43135485)
               

               
               1-922, gnl|Hg17|chr7 (44697496-44696564)
               

               
               1-922, gnl|Mm7|chr11 (6427162-6426218)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eru (0.240096)
               

               
               cli (0.152812)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.240096)
               

               
               cli (0.152812)

	1-922, gnl\|bosTau2\|chr4 (43136406-43135485)
	1-922, gnl\|Hg17\|chr7 (44697496-44696564)
	1-922, gnl\|Mm7\|chr11 (6427162-6426218)