Non-Coding RNA Search

Ss1.1-Pig4-TMW8039O15.3

Sequence:


               
               TGATGCCATCCAGCTGGTAGCCAGGAAGGTAGCAGCCCTCTCTGGAGATGCACGGCGCTG
CCTGGACATTTGTAGGCGTGCCACCGAGATTTGTGAGTCCTCCTGCCAGAAGCCCAACTC
CCCTGGCCTGGTCACTACAGCCCACTTACTGGAAGCAGTAGATGAGATGTTTTCATCGTC
ATACATCACTGCCATCAAAAATTCCTCCGTTCTGGAACAAAGCTTTCTGAGAGCCATCCT
CACAGAGTTCCGCCGATCAGGACTGGAGGAAGCAACATTTCAACAGGTATACAGTCAACA
CGTGGCGCTATGCAGGATGGAGGGGCTCCCATACCCCACCATGTCGGAGACCATGGCCGT
GTGCTCTCACCTGGGCTCCTGCCGCCTTCTACTCGTGGAGCCCAGCAGGAACGACCTGCT
CCTTCGTGTGCGCCTCAACGTCAGTCAGGATGACGTTCTGTATGCACTGAAAGAAGAGTG
AAGGGCTTCGCAAGGAAGGACCGACCTGCTGATTCCTTTTTCTAAGCACGGGGAGTCCTA
GCAGCAAAGTATCCTGAATGGAAATGGATGTCACGTATTTTGGAATTTTCCATTAAATCA
TTTGCCTTTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATGCCATCCAGCTGGTAGCCAGGAAGGTAGCAGCCCTCTCTGGAGATGCACGGCGCTG
CCTGGACATTTGTAGGCGTGCCACCGAGATTTGTGAGTCCTCCTGCCAGAAGCCCAACTC
CCCTGGCCTGGTCACTACAGCCCACTTACTGGAAGCAGTAGATGAGATGTTTTCATCGTC
ATACATCACTGCCATCAAAAATTCCTCCGTTCTGGAACAAAGCTTTCTGAGAGCCATCCT
CACAGAGTTCCGCCGATCAGGACTGGAGGAAGCAACATTTCAACAGGTATACAGTCAACA
CGTGGCGCTATGCAGGATGGAGGGGCTCCCATACCCCACCATGTCGGAGACCATGGCCGT
GTGCTCTCACCTGGGCTCCTGCCGCCTTCTACTCGTGGAGCCCAGCAGGAACGACCTGCT
CCTTCGTGTGCGCCTCAACGTCAGTCAGGATGACGTTCTGTATGCACTGAAAGAAGAGTG
AAGGGCTTCGCAAGGAAGGACCGACCTGCTGATTCCTTTTTCTAAGCACGGGGAGTCCTA
GCAGCAAAGTATCCTGAATGGAAATGGATGTCACGTATTTTGGAATTTTCCATTAAATCA
TTTGCCTTTTTC

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               27-198, gnl|bosTau2|chr3 (70231824-70231653)
               

               
               27-198, gnl|Hg17|chr1 (52553294-52553123)
               

               
               27-198, gnl|Mm7|chr4 (107988488-107988659)
               


               
               285-610, gnl|bosTau2|chr3 (70228803-70228470)
               

               
               285-610, gnl|Hg17|chr1 (52551070-52550527)
               

               
               285-610, gnl|Mm7|chr4 (107990718-107991045)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-198, gnl|bosTau2|chr3 (70231824-70231653)
               

               
               27-198, gnl|Hg17|chr1 (52553294-52553123)
               

               
               27-198, gnl|Mm7|chr4 (107988488-107988659)
               


               
               285-610, gnl|bosTau2|chr3 (70228803-70228470)
               

               
               285-610, gnl|Hg17|chr1 (52551070-52550527)
               

               
               285-610, gnl|Mm7|chr4 (107990718-107991045)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.245128)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)

	27-198, gnl\|bosTau2\|chr3 (70231824-70231653)
	27-198, gnl\|Hg17\|chr1 (52553294-52553123)
	27-198, gnl\|Mm7\|chr4 (107988488-107988659)

	285-610, gnl\|bosTau2\|chr3 (70228803-70228470)
	285-610, gnl\|Hg17\|chr1 (52551070-52550527)
	285-610, gnl\|Mm7\|chr4 (107990718-107991045)