Ss1.1-Pig4-TMW8039O20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCCGCCTGCCGTGTAGTCACCGCCGCCGCCGCCGCCGTCGTTGTTGTTGTGGTTGGTGC GCTGAGCTCCGCGGCTCCGAGAGCCGGCTGCGTCCTTTCCCCGCTGTCGCCATGAAGTGG ATGTTCAAGGAGGACCACTCGCTGGAACACAGATGCGTGGAATCTGCGAAGATCCGAGCG AAATATCCCGACCGGGTTCCGGTGATCGTGGAAAAAGTCTCAGGCTCTCAGATTGTTGAC ATTGACAAACGGAAATACCTGGTTCCATCTGACATCACTGTGGCTCAGTTCATGTGGATT ATCAGGAAAAGGATCCAGCTTCCTTCTGAAAAGGCAATCTTCCTGTTTGTGGATAAGACA GTCCCACAGTCCAGCCTCACTATGGGACAGCTTTACGAGAAGGAAAAAGATGAAGATGGA TTCTTGTATGTGGCCTACAGTGGAGAGAACACGTTTGGCTTCTGAGGGCCAGTGCTGGGC TAGGTGCACCATTCCTGCTTGTGTATCTTGTAAATAGCTGGCCGTTTTTCCGTTACTTTA CCAGAATCTCTTCACATAGACCTGTTAGTGCATTTGTAACTGGATTTATTTCTTAATATA TTGGAAGGTTTTGTTTCTTTAGACTAGTAAATTATCATACAGAGTTTTATTTTGAGTTTT TCTTTTTGTGCACTGTCCTCATGGCTATACTCTCCAGGGAACTTGTTTCTCTGGGAATCT TAATTTAATGAAAATTTTCCCATATTGAAGTGAGGTAGGTGGGGAACTAAAGTGAAAGGG AGGGAGATGATGCATTTATTCTGGATTATGTTTGAAGTGTTAGATGGCTAAGTATTAAAA GCATTCAAATTAAATCCTTAGCAATCCGAACACTTGCTTCACTAGATTTTGCCAACCTCC AATCATGTTGGACTGAGCTAATCTGTTCCTCTTTCTGAAACTATTAAGGTAAATAATTAA CAATAAAACTTATAAAGGCAAAAAAAAAAAAAAAAATCCTTTATTCACCTCTTTGGACGA GTCAAGGAAGCAGCTCCTATGTCTGCCAGGCCAGGAGGATGGTCTGTGGGGCCGACGGCA GCACAGCCGAGCACAGGAAGCAGTGGCCTGTGTCATGAGAAGGGTTTTTTTTTTGTTTTT TTTTTAAGTGCTTAATATATTCACATGGTTCAGCTATCAGGTCTCAATAAAAAGGTATAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCCGCCTGCCGTGTAGTCACCGCCGCCGCCGCCGCCGTCGTTGTTGTTGTGGTTGGTGC GCTGAGCTCCGCGGCTCCGAGAGCCGGCTGCGTCCTTTCCCCGCTGTCGCCATGAAGTGG ATGTTCAAGGAGGACCACTCGCTGGAACACAGATGCGTGGAATCTGCGAAGATCCGAGCG AAATATCCCGACCGGGTTCCGGTGATCGTGGAAAAAGTCTCAGGCTCTCAGATTGTTGAC ATTGACAAACGGAAATACCTGGTTCCATCTGACATCACTGTGGCTCAGTTCATGTGGATT ATCAGGAAAAGGATCCAGCTTCCTTCTGAAAAGGCAATCTTCCTGTTTGTGGATAAGACA GTCCCACAGTCCAGCCTCACTATGGGACAGCTTTACGAGAAGGAAAAAGATGAAGATGGA TTCTTGTATGTGGCCTACAGTGGAGAGAACACGTTTGGCTTCTGAGGGCCAGTGCTGGGC TAGGTGCACCATTCCTGCTTGTGTATCTTGTAAATAGCTGGCCGTTTTTCCGTTACTTTA CCAGAATCTCTTCACATAGACCTGTTAGTGCATTTGTAACTGGATTTATTTCTTAATATA TTGGAAGGTTTTGTTTCTTTAGACTAGTAAATTATCATACAGAGTTTTATTTTGAGTTTT TCTTTTTGTGCACTGTCCTCATGGCTATACTCTCCAGGGAACTTGTTTCTCTGGGAATCT TAATTTAATGAAAATTTTCCCATATTGAAGTGAGGTAGGTGGGGAACTAAAGTGAAAGGG AGGGAGATGATGCATTTATTCTGGATTATGTTTGAAGTGTTAGATGGCTAAGTATTAAAA GCATTCAAATTAAATCCTTAGCAATCCGAACACTTGCTTCACTAGATTTTGCCAACCTCC AATCATGTTGGACTGAGCTAATCTGTTCCTCTTTCTGAAACTATTAAGGTAAATAATTAA CAATAAAACTTATAAAGGCAAAAAAAAAAAAAAAAATCCTTTATTCACCTCTTTGGACGA GTCAAGGAAGCAGCTCCTATGTCTGCCAGGCCAGGAGGATGGTCTGTGGGGCCGACGGCA GCACAGCCGAGCACAGGAAGCAGTGGCCTGTGTCATGAGAAGGGTTTTTTTTTTGTTTTT TTTTTAAGTGCTTAATATATTCACATGGTTCAGCTATCAGGTCTCAATAAAAAGGTATAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 769-888, + strand, RNAz p=0.515954 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 769-888, + strand, RNAz p=0.515954 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_007285, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-145, gnl|bosTau2|chr18 (1697527-1697387) | |
| 1-145, gnl|canFam2|chr14 (48207663-48207755) | |
| 1-145, gnl|canFam2|chr5 (78245660-78245545) | |
| 1-145, gnl|dasNov1|scaffold_91439 (7628-7504) | |
| 1-145, gnl|dasNov1|scaffold_91439 (7499-7597) | |
| 1-145, gnl|echTel1|scaffold_316988 (2197-2301) | |
| 1-145, gnl|echTel1|scaffold_316988 (2306-2199) | |
| 1-145, gnl|hg17|chr1 (216781943-216782054) | |
| 1-145, gnl|Hg17|chr16 (74157763-74157919) | |
| 1-145, gnl|hg17|chr2 (9906859-9906953) | |
| 1-145, gnl|loxAfr1|scaffold_5318 (31282-31187) | |
| 1-145, gnl|loxAfr1|scaffold_5318 (31182-31281) | |
| 1-145, gnl|mm7|chr12 (22309240-22309332) | |
| 1-145, gnl|mm7|chr5 (23159221-23159132) | |
| 1-145, gnl|Mm7|chr8 (110540757-110540897) | |
| 1-145, gnl|monDom2|scaffold_23 (314374-314502) | |
| 1-145, gnl|oryCun1|scaffold_30650 (1143-1075) | |
| 1-145, gnl|oryCun1|scaffold_30650 (1070-1142) | |
| 1-145, gnl|panTro1|chr12 (10580975-10581069) | |
| 1-145, gnl|panTro1|chr1_random (44541763-44541874) | |
| 1-145, gnl|rheMac2|chr1 (150143381-150143270) | |
| 1-145, gnl|rheMac2|chr13 (9921458-9921552) | |
| 1-145, gnl|rn3|chr6 (42106456-42106563) | |
| 1-145, gnl|rn3|chr8 (93585931-93586020) | |
| 370-1101, gnl|bosTau2|chr18 (1688036-1687306) | |
| 370-1101, gnl|Hg17|chr16 (74168673-74169403) | |
| 370-1101, gnl|Mm7|chr8 (110552355-110553073) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-145, gnl|bosTau2|chr18 (1697527-1697387) | |
| 1-145, gnl|canFam2|chr14 (48207663-48207755) | |
| 1-145, gnl|canFam2|chr5 (78245660-78245545) | |
| 1-145, gnl|dasNov1|scaffold_91439 (7628-7504) | |
| 1-145, gnl|dasNov1|scaffold_91439 (7499-7597) | |
| 1-145, gnl|echTel1|scaffold_316988 (2197-2301) | |
| 1-145, gnl|echTel1|scaffold_316988 (2306-2199) | |
| 1-145, gnl|hg17|chr1 (216781943-216782054) | |
| 1-145, gnl|Hg17|chr16 (74157763-74157919) | |
| 1-145, gnl|hg17|chr2 (9906859-9906953) | |
| 1-145, gnl|loxAfr1|scaffold_5318 (31282-31187) | |
| 1-145, gnl|loxAfr1|scaffold_5318 (31182-31281) | |
| 1-145, gnl|mm7|chr12 (22309240-22309332) | |
| 1-145, gnl|mm7|chr5 (23159221-23159132) | |
| 1-145, gnl|Mm7|chr8 (110540757-110540897) | |
| 1-145, gnl|monDom2|scaffold_23 (314374-314502) | |
| 1-145, gnl|oryCun1|scaffold_30650 (1143-1075) | |
| 1-145, gnl|oryCun1|scaffold_30650 (1070-1142) | |
| 1-145, gnl|panTro1|chr12 (10580975-10581069) | |
| 1-145, gnl|panTro1|chr1_random (44541763-44541874) | |
| 1-145, gnl|rheMac2|chr1 (150143381-150143270) | |
| 1-145, gnl|rheMac2|chr13 (9921458-9921552) | |
| 1-145, gnl|rn3|chr6 (42106456-42106563) | |
| 1-145, gnl|rn3|chr8 (93585931-93586020) | |
| 370-1101, gnl|bosTau2|chr18 (1688036-1687306) | |
| 370-1101, gnl|Hg17|chr16 (74168673-74169403) | |
| 370-1101, gnl|Mm7|chr8 (110552355-110553073) |
| Expressed library(ies): 65 entry(ies) | More info |
| Expressed library(ies): 65 entry(ies) | Help | Less info |
| sme (1.52718) | |
| spc (1.36039) | |
| pgl (0.829384) | |
| ste (0.676041) | |
| nmm (0.664011) | |
| kid (0.648677) | |
| sug (0.636456) | |
| fco (0.628832) | |
| bla (0.621736) | |
| tbr (0.616713) | |
| aor (0.585823) | |
| nlu (0.575043) | |
| sto (0.539471) | |
| csk (0.422238) | |
| hea (0.408998) | |
| elu (0.385356) | |
| thg (0.380373) | |
| mgm (0.360685) | |
| gul (0.355177) | |
| fty (0.351679) | |
| vin (0.332557) | |
| mga (0.32041) | |
| isp (0.300752) | |
| cte (0.29274) | |
| lin (0.291206) | |
| ldo (0.291008) | |
| spl (0.286369) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| che (0.272628) | |
| ssp (0.271039) | |
| ova (0.258264) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| pan (0.23596) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| col (0.195008) | |
| sag (0.182715) | |
| ill (0.175593) | |
| ton (0.1755) | |
| sin (0.174948) | |
| rec (0.17307) | |
| duo (0.172801) | |
| cut (0.169924) | |
| cki (0.165235) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ret (0.128733) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 65 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (1.52718) | |
| spc (1.36039) | |
| pgl (0.829384) | |
| ste (0.676041) | |
| nmm (0.664011) | |
| kid (0.648677) | |
| sug (0.636456) | |
| fco (0.628832) | |
| bla (0.621736) | |
| tbr (0.616713) | |
| aor (0.585823) | |
| nlu (0.575043) | |
| sto (0.539471) | |
| csk (0.422238) | |
| hea (0.408998) | |
| elu (0.385356) | |
| thg (0.380373) | |
| mgm (0.360685) | |
| gul (0.355177) | |
| fty (0.351679) | |
| vin (0.332557) | |
| mga (0.32041) | |
| isp (0.300752) | |
| cte (0.29274) | |
| lin (0.291206) | |
| ldo (0.291008) | |
| spl (0.286369) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| che (0.272628) | |
| ssp (0.271039) | |
| ova (0.258264) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| pan (0.23596) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| col (0.195008) | |
| sag (0.182715) | |
| ill (0.175593) | |
| ton (0.1755) | |
| sin (0.174948) | |
| rec (0.17307) | |
| duo (0.172801) | |
| cut (0.169924) | |
| cki (0.165235) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ret (0.128733) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |