Ss1.1-Pig4-TMW8039O23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGTGCGCACCCCTGCCCCGGCCCGGATGCGAAGCGAGCCCCGGCGCCATGGCTTCGAA CGGCTGCCCGCCGTCACCGCTGCTCGTGCGGGTGTCCCAGCCCGGCACCCGCCTACAAAG GAAGCTGGAAAAGTACTTCCAGAGCCGGGAGTCAGGCGGTGGGGAATGCACCGTCCAGGC CCTGGACCGCAACAACCCAGACACCTTCCGGGTGCAGTTCCTGCAAAGGGCAGGTAAAGA GGGAGTATTGAAAAAAAGAAAAGCACCAAATTGTGGTTGACAGCAAAACAGTGACTATTT TCCTGGAATCCAATGAAACTGCAATAGAGAAGAATACAAGACCTAGGATATCGTCTTTGA CACAGTCAAAAAAAGGGGCGAGGGATGGTGAAAAGCAACCGAATGAGAAGCACATTCCTA ATGCTTCAGATTCCTCCGTCCAGAAGATCTTTCTTACTGTCACAGCTGAACTGAACTGCC GCCTGTTTTCTAAAGAGCAGAGGGACTGCATCACCACTCTCTGCCCCAATGTCCAACGAT GGGAGGGTGCTGATGGAATTAAGACGGTGTTTGGTGACTTCAAAGATATTGAAAAAATAC ATAGCTTCTTGAATGAGCAGCTCCTGGGAAGGGGGCAGACACATGAATTGTCCCCCATGA CAACAGAGAGGGAGCCGTTCCATCAAGAGGACAGGAACAGCTATGTTTTTCCCTCTGAAT CAAAAACCAAGTCAGAAGCAAAAAGCAATGGTTTTGAAGTTCCCTTGGCTTTCTTTGAAT ACTTCACATATACCTCTCCGGATATAATACCCTCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGTGCGCACCCCTGCCCCGGCCCGGATGCGAAGCGAGCCCCGGCGCCATGGCTTCGAA CGGCTGCCCGCCGTCACCGCTGCTCGTGCGGGTGTCCCAGCCCGGCACCCGCCTACAAAG GAAGCTGGAAAAGTACTTCCAGAGCCGGGAGTCAGGCGGTGGGGAATGCACCGTCCAGGC CCTGGACCGCAACAACCCAGACACCTTCCGGGTGCAGTTCCTGCAAAGGGCAGGTAAAGA GGGAGTATTGAAAAAAAGAAAAGCACCAAATTGTGGTTGACAGCAAAACAGTGACTATTT TCCTGGAATCCAATGAAACTGCAATAGAGAAGAATACAAGACCTAGGATATCGTCTTTGA CACAGTCAAAAAAAGGGGCGAGGGATGGTGAAAAGCAACCGAATGAGAAGCACATTCCTA ATGCTTCAGATTCCTCCGTCCAGAAGATCTTTCTTACTGTCACAGCTGAACTGAACTGCC GCCTGTTTTCTAAAGAGCAGAGGGACTGCATCACCACTCTCTGCCCCAATGTCCAACGAT GGGAGGGTGCTGATGGAATTAAGACGGTGTTTGGTGACTTCAAAGATATTGAAAAAATAC ATAGCTTCTTGAATGAGCAGCTCCTGGGAAGGGGGCAGACACATGAATTGTCCCCCATGA CAACAGAGAGGGAGCCGTTCCATCAAGAGGACAGGAACAGCTATGTTTTTCCCTCTGAAT CAAAAACCAAGTCAGAAGCAAAAAGCAATGGTTTTGAAGTTCCCTTGGCTTTCTTTGAAT ACTTCACATATACCTCTCCGGATATAATACCCTCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 606-804, - strand, RNAz p=0.929705 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 606-804, - strand, RNAz p=0.929705 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 47-235, gnl|bosTau2|chr1 (39309039-39308845) | |
| 47-235, gnl|canFam2|chr33 (28718701-28719016) | |
| 47-235, gnl|dasNov1|scaffold_8526 (8294-7878) | |
| 47-235, gnl|echTel1|scaffold_278996 (9493-9856) | |
| 47-235, gnl|galGal2|chr7 (28950111-28949807) | |
| 47-235, gnl|hg17|chr3 (123765839-123766221) | |
| 47-235, gnl|Hg17|chr3 (123765961-123766152) | |
| 47-235, gnl|loxAfr1|scaffold_19073 (43547-43143) | |
| 47-235, gnl|mm7|chr16 (35613227-35612836) | |
| 47-235, gnl|Mm7|chr16 (35613093-35612905) | |
| 47-235, gnl|monDom2|scaffold_24 (20184122-20183677) | |
| 47-235, gnl|panTro1|chr2 (125463454-125463836) | |
| 47-235, gnl|rheMac2|chr2 (42560922-42561322) | |
| 47-235, gnl|rn3|chr11 (66707077-66707462) | |
| 445-814, gnl|bosTau2|chr1 (39304414-39304045) | |
| 445-814, gnl|canFam2|chr33 (28722452-28722715) | |
| 445-814, gnl|dasNov1|scaffold_8526 (4909-4646) | |
| 445-814, gnl|echTel1|scaffold_228453 (1089-826) | |
| 445-814, gnl|galGal2|chr7 (28948763-28948502) | |
| 445-814, gnl|hg17|chr3 (123769995-123770264) | |
| 445-814, gnl|Hg17|chr3 (123770024-123770393) | |
| 445-814, gnl|loxAfr1|scaffold_72703 (267-4) | |
| 445-814, gnl|mm7|chr16 (35608043-35607782) | |
| 445-814, gnl|Mm7|chr16 (35608014-35607666) | |
| 445-814, gnl|monDom2|scaffold_24 (20176751-20176488) | |
| 445-814, gnl|panTro1|chr2 (125467662-125467931) | |
| 445-814, gnl|rheMac2|chr2 (42565085-42565354) | |
| 445-814, gnl|rn3|chr11 (66710499-66710761) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 47-235, gnl|bosTau2|chr1 (39309039-39308845) | |
| 47-235, gnl|canFam2|chr33 (28718701-28719016) | |
| 47-235, gnl|dasNov1|scaffold_8526 (8294-7878) | |
| 47-235, gnl|echTel1|scaffold_278996 (9493-9856) | |
| 47-235, gnl|galGal2|chr7 (28950111-28949807) | |
| 47-235, gnl|hg17|chr3 (123765839-123766221) | |
| 47-235, gnl|Hg17|chr3 (123765961-123766152) | |
| 47-235, gnl|loxAfr1|scaffold_19073 (43547-43143) | |
| 47-235, gnl|mm7|chr16 (35613227-35612836) | |
| 47-235, gnl|Mm7|chr16 (35613093-35612905) | |
| 47-235, gnl|monDom2|scaffold_24 (20184122-20183677) | |
| 47-235, gnl|panTro1|chr2 (125463454-125463836) | |
| 47-235, gnl|rheMac2|chr2 (42560922-42561322) | |
| 47-235, gnl|rn3|chr11 (66707077-66707462) | |
| 445-814, gnl|bosTau2|chr1 (39304414-39304045) | |
| 445-814, gnl|canFam2|chr33 (28722452-28722715) | |
| 445-814, gnl|dasNov1|scaffold_8526 (4909-4646) | |
| 445-814, gnl|echTel1|scaffold_228453 (1089-826) | |
| 445-814, gnl|galGal2|chr7 (28948763-28948502) | |
| 445-814, gnl|hg17|chr3 (123769995-123770264) | |
| 445-814, gnl|Hg17|chr3 (123770024-123770393) | |
| 445-814, gnl|loxAfr1|scaffold_72703 (267-4) | |
| 445-814, gnl|mm7|chr16 (35608043-35607782) | |
| 445-814, gnl|Mm7|chr16 (35608014-35607666) | |
| 445-814, gnl|monDom2|scaffold_24 (20176751-20176488) | |
| 445-814, gnl|panTro1|chr2 (125467662-125467931) | |
| 445-814, gnl|rheMac2|chr2 (42565085-42565354) | |
| 445-814, gnl|rn3|chr11 (66710499-66710761) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) | |
| nmm (0.132802) |