Non-Coding RNA Search

Ss1.1-Pig4-TMW8039P02.3

Sequence:


               
               CTTTGCAGGGCAGCTCCTCCACCTCAGCCTCACCATGGCCTCCGCTGGCCTGCAAATCCT
GGGGATCGTCCTGACGCTGTTTGGCTGGGTGAATGCCCTGGTGTGCTGCGCCCTGCCCCT
GTGGAAGGTGACCGCCTTCATCGGCAACAGCATCGTGGTGGCCCAGGTGGTCTGGGAGGG
GCTGTGGATGTCCTGCGTGGTGCAGAGCACAGGCCAGATGCAGTGCAAGGTGTATGACTC
GCTGCTGGCACTGCCCCAGGACCTGCAGGCAGCCCGTGCCCTCTGTGTCATCACTCTCCT
CGTGGTCCTGCTCGGCCTGCTGGTCTACCTCTCGGGAGCCAAGTGCACCACCTGCGTGGA
GGACAAGGACACCAAGGCCCGTCTGGTGCTCACCTCTGGGATCATCTTCGTCCTCTCAGG
GGTGCTGACCCTGATCCCCGTGTGCTGGACGGCACACGCCATCATCCAGGACTTCTACAA
CCCCCTAGTGGCTGAGGCCCAGAAGCGGGAGCTGGGAGCCTCCCTCTACTTGGGCTGGGC
GGCCTCTGGCCTTTTGTTGCTGGGTGGTGGGCTCCTGTGCTGCACCTGTCCCTCGGGGAG
ATCCCAGGGCTCCAGCCATTATATGGCCCGATACTCGGCATCAGCCCCACACACTGCCTC
TCGGGGTCCCTCTGAGTACCCCACTAAGAATTATGTCTAATTCGGGTGGGGGTGGGGGCT
CCCATGACACTGGCGCCTAACCCTGAGCTGGAACCACGGAGACGGTGATCCGTGACAGCT
TCGGGTTTGCTTTTGCTTCAGATGGGGGCCCCTGGTTGATCCTCACCCCTGTAAGACGGA
GCCAGAGAAGCGATGCTTCTGAGTTTGTGCATCTTTCTCCACCCTGGACACCCCCGTCTT
AGAGACCCACCTGGAGCTGAGGGTCCTGTGTGAAGCTCTTTGCTGGCCAGGTGCCTTCAC
CCTGTCCTCAGGAGTTCCTGCAGTCGCTGGGGGCAAGGGTTCCCCAGGCTTGCAGGGACA
AGCCTTCCCTTGATGGTCAGGCTTCTGGAACTCCCAGGGGCTCTTGAGCCTCATGAAGCC
ACTAGGACAGTAGGCGCTAAGTTACCAAAGAACCACCCAATCTTCAGACCTCCGGCTCCT
CCCTCATGAGTCCTGCCCCCTCGGCGCTTGACCCCCCTCAGCTCCAACCCCTGTGCACGT
CTGCCAGGTCCTGTCCACACTCACCAGTTTTTTCTAAATAAAGCACGTTTCATTTGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGCAGGGCAGCTCCTCCACCTCAGCCTCACCATGGCCTCCGCTGGCCTGCAAATCCT
GGGGATCGTCCTGACGCTGTTTGGCTGGGTGAATGCCCTGGTGTGCTGCGCCCTGCCCCT
GTGGAAGGTGACCGCCTTCATCGGCAACAGCATCGTGGTGGCCCAGGTGGTCTGGGAGGG
GCTGTGGATGTCCTGCGTGGTGCAGAGCACAGGCCAGATGCAGTGCAAGGTGTATGACTC
GCTGCTGGCACTGCCCCAGGACCTGCAGGCAGCCCGTGCCCTCTGTGTCATCACTCTCCT
CGTGGTCCTGCTCGGCCTGCTGGTCTACCTCTCGGGAGCCAAGTGCACCACCTGCGTGGA
GGACAAGGACACCAAGGCCCGTCTGGTGCTCACCTCTGGGATCATCTTCGTCCTCTCAGG
GGTGCTGACCCTGATCCCCGTGTGCTGGACGGCACACGCCATCATCCAGGACTTCTACAA
CCCCCTAGTGGCTGAGGCCCAGAAGCGGGAGCTGGGAGCCTCCCTCTACTTGGGCTGGGC
GGCCTCTGGCCTTTTGTTGCTGGGTGGTGGGCTCCTGTGCTGCACCTGTCCCTCGGGGAG
ATCCCAGGGCTCCAGCCATTATATGGCCCGATACTCGGCATCAGCCCCACACACTGCCTC
TCGGGGTCCCTCTGAGTACCCCACTAAGAATTATGTCTAATTCGGGTGGGGGTGGGGGCT
CCCATGACACTGGCGCCTAACCCTGAGCTGGAACCACGGAGACGGTGATCCGTGACAGCT
TCGGGTTTGCTTTTGCTTCAGATGGGGGCCCCTGGTTGATCCTCACCCCTGTAAGACGGA
GCCAGAGAAGCGATGCTTCTGAGTTTGTGCATCTTTCTCCACCCTGGACACCCCCGTCTT
AGAGACCCACCTGGAGCTGAGGGTCCTGTGTGAAGCTCTTTGCTGGCCAGGTGCCTTCAC
CCTGTCCTCAGGAGTTCCTGCAGTCGCTGGGGGCAAGGGTTCCCCAGGCTTGCAGGGACA
AGCCTTCCCTTGATGGTCAGGCTTCTGGAACTCCCAGGGGCTCTTGAGCCTCATGAAGCC
ACTAGGACAGTAGGCGCTAAGTTACCAAAGAACCACCCAATCTTCAGACCTCCGGCTCCT
CCCTCATGAGTCCTGCCCCCTCGGCGCTTGACCCCCCTCAGCTCCAACCCCTGTGCACGT
CTGCCAGGTCCTGTCCACACTCACCAGTTTTTTCTAAATAAAGCACGTTTCATTTGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               CLD6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               CLD6_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               582-695, - strand, RNAz p=0.720493
               

               
               965-1083, + strand, RNAz p=0.987134

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               582-695, - strand, RNAz p=0.720493
               

               
               965-1083, + strand, RNAz p=0.987134

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_021195, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_021195, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               23-808, gnl|bosTau2|chr17 (36962681-36961911)
               

               
               23-808, gnl|Hg17|chr16 (3006034-3005246)
               

               
               23-808, gnl|Mm7|chr17 (21860927-21861684)
               


               
               853-1250, gnl|bosTau2|chr17 (36961828-36961429)
               

               
               853-1250, gnl|Hg17|chr16 (3005140-3004724)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-808, gnl|bosTau2|chr17 (36962681-36961911)
               

               
               23-808, gnl|Hg17|chr16 (3006034-3005246)
               

               
               23-808, gnl|Mm7|chr17 (21860927-21861684)
               


               
               853-1250, gnl|bosTau2|chr17 (36961828-36961429)
               

               
               853-1250, gnl|Hg17|chr16 (3005140-3004724)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	582-695, - strand, RNAz p=0.720493
	965-1083, + strand, RNAz p=0.987134

	23-808, gnl\|bosTau2\|chr17 (36962681-36961911)
	23-808, gnl\|Hg17\|chr16 (3006034-3005246)
	23-808, gnl\|Mm7\|chr17 (21860927-21861684)

	853-1250, gnl\|bosTau2\|chr17 (36961828-36961429)
	853-1250, gnl\|Hg17\|chr16 (3005140-3004724)