Ss1.1-Pig4-TMW8039P03.3.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACTAAAATGATGGTTTT TAATGGGATCCAGAGGTATGGTTACAATTACACAGAGTCCGACACACAAAACCGTGGGTG ATCAGGAGTTGGAAGGTTACAAAATAACGAGGATAACACTGGGTACAGGAAGAAAAGCTG CTCCAGAACCCGAGGAGCCAGGCTAATACGGCCTCTCCCTTCGATCCTGTCTGTGCTCAC CCCTGGAGTCCATCTTGCCAGGGCCAAAGCCACCTCTGTCCCCACCACCCCGGCCCCCTC GGAAGCCCCCACGGTCCCCGCCTCGGCCTCGGTAGCCGCCTCGATCATAGCCGCCTCTGC CGCCACGCCGATCATCTCCGTAGCTGCCCCCCATATGAGAGCCTCCTGGTCCCCCTCCTG GGCCATCTGGCTTGGGGGCCTTACACTGGTTGCATTCATTCCTCCAAGAGAAGTTCATGT TCTCACACGTGGGATTAGGACACTTCCAGTCCCCGGCTCGCTGCTGTCCTCCTCCGCCAC CGCCGCCACTGGGGAATCCTCCTCGGCCACCGCCACCACTGCCACCACCTCCGTAGCCCC CACGGCCCATGGGTCCTCCTCGCCCTCGGCCTCCACGACCATTGCCACCGCCCCGATTGA AGTCTGCTCGCCGAGTAGCAAATGAGACCTTGATAGGATTCCCCGAGAATTCTTTACCAT CAAACCAGTCGATCGCTGCTTTCGCAGACGGTGGGTCATCAAAGGAGACTGTTGCCTCTC CCTTCAGCTTGCCTGTTTCCCGGTCCGTGTACAGATTAATCATGGGCTGTCCCGTCTTCT TATTTGTCTTAATGATACCGATCTGCTTGAAGTAATCAGCCACAGACTCAATTGTAACAT TCTCGCCCAGGCCTTGCACGAAGATGGTGTTGTTGTCTGAATTATCTTGTTCAGAGTCAT GACGTGATCCTTGGTCCCGAGGGCCACCAAATTTATTGAAGCCACCACGGTCACTTCCGC CCATGCCGCCTCAGCCGTTAGTCAACAGGGAGAGACAGACAAGGGAAAATTAACACCAAA TCCAAACTTTTGCACCACCGCCACCGCTGCCGCCGCCCCGGCCACGGCCCCCACGGTCCT GGGTTGCCCGCCCAGAGAAAAGTCCTAGGCAGGTCTGGGCAAGACACAGGCCCCTTTTCT TAAGCTCTGTATGTAACTTGAGTCCCCACAGGGACAACTCCACACTTCAGAAAATGCTGC CTCCCCCAGCTCAGGCTGGGCAATGTCCTCAGCACAGAGTGGGAGGGCCAGGAGGGAGAC |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACTAAAATGATGGTTTT TAATGGGATCCAGAGGTATGGTTACAATTACACAGAGTCCGACACACAAAACCGTGGGTG ATCAGGAGTTGGAAGGTTACAAAATAACGAGGATAACACTGGGTACAGGAAGAAAAGCTG CTCCAGAACCCGAGGAGCCAGGCTAATACGGCCTCTCCCTTCGATCCTGTCTGTGCTCAC CCCTGGAGTCCATCTTGCCAGGGCCAAAGCCACCTCTGTCCCCACCACCCCGGCCCCCTC GGAAGCCCCCACGGTCCCCGCCTCGGCCTCGGTAGCCGCCTCGATCATAGCCGCCTCTGC CGCCACGCCGATCATCTCCGTAGCTGCCCCCCATATGAGAGCCTCCTGGTCCCCCTCCTG GGCCATCTGGCTTGGGGGCCTTACACTGGTTGCATTCATTCCTCCAAGAGAAGTTCATGT TCTCACACGTGGGATTAGGACACTTCCAGTCCCCGGCTCGCTGCTGTCCTCCTCCGCCAC CGCCGCCACTGGGGAATCCTCCTCGGCCACCGCCACCACTGCCACCACCTCCGTAGCCCC CACGGCCCATGGGTCCTCCTCGCCCTCGGCCTCCACGACCATTGCCACCGCCCCGATTGA AGTCTGCTCGCCGAGTAGCAAATGAGACCTTGATAGGATTCCCCGAGAATTCTTTACCAT CAAACCAGTCGATCGCTGCTTTCGCAGACGGTGGGTCATCAAAGGAGACTGTTGCCTCTC CCTTCAGCTTGCCTGTTTCCCGGTCCGTGTACAGATTAATCATGGGCTGTCCCGTCTTCT TATTTGTCTTAATGATACCGATCTGCTTGAAGTAATCAGCCACAGACTCAATTGTAACAT TCTCGCCCAGGCCTTGCACGAAGATGGTGTTGTTGTCTGAATTATCTTGTTCAGAGTCAT GACGTGATCCTTGGTCCCGAGGGCCACCAAATTTATTGAAGCCACCACGGTCACTTCCGC CCATGCCGCCTCAGCCGTTAGTCAACAGGGAGAGACAGACAAGGGAAAATTAACACCAAA TCCAAACTTTTGCACCACCGCCACCGCTGCCGCCGCCCCGGCCACGGCCCCCACGGTCCT GGGTTGCCCGCCCAGAGAAAAGTCCTAGGCAGGTCTGGGCAAGACACAGGCCCCTTTTCT TAAGCTCTGTATGTAACTTGAGTCCCCACAGGGACAACTCCACACTTCAGAAAATGCTGC CTCCCCCAGCTCAGGCTGGGCAATGTCCTCAGCACAGAGTGGGAGGGCCAGGAGGGAGAC |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
390-1320, - strand, RNAz p=0.986714 | |
492-1320, + strand, RNAz p=0.996818 |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
390-1320, - strand, RNAz p=0.986714 | |
492-1320, + strand, RNAz p=0.996818 |
Aligned organism(s): 96 entry(ies) | More info |
Aligned organism(s): 96 entry(ies) | Help | Less info |
40-245, gnl|bosTau2|chr25 (23040920-23040714) | |
40-245, gnl|canFam2|chr6 (20070952-20070751) | |
40-245, gnl|dasNov1|scaffold_140253 (3889-4094) | |
40-245, gnl|echTel1|scaffold_249417 (793-987) | |
40-245, gnl|Hg17|chr16 (31110427-31110218) | |
40-245, gnl|hg17|chr6_random (1471429-1471638) | |
40-245, gnl|loxAfr1|scaffold_24057 (23220-23410) | |
40-245, gnl|mm7|chr7 (124078347-124078588) | |
40-245, gnl|Mm7|chr7 (124078590-124078346) | |
40-245, gnl|monDom2|scaffold_5 (88722822-88723030) | |
40-245, gnl|oryCun1|scaffold_133887 (544-748) | |
40-245, gnl|panTro1|chr5_random (52807518-52807309) | |
40-245, gnl|rheMac2|chr20 (29288927-29289133) | |
40-245, gnl|rn3|chrX (27223224-27222970) | |
390-490, gnl|bosTau2|chr25 (23040164-23040064) | |
390-490, gnl|canFam2|chr6 (20071795-20071669) | |
390-490, gnl|danRer3|chr3 (27198794-27198666) | |
390-490, gnl|dasNov1|scaffold_140253 (3647-3745) | |
390-490, gnl|echTel1|scaffold_173398 (272-172) | |
390-490, gnl|fr1|chrUn (14764036-14764143) | |
390-490, gnl|galGal2|chr19 (4091251-4091354) | |
390-490, gnl|hg17|chr16 (31109538-31109666) | |
390-490, gnl|Hg17|chr16 (31109665-31109565) | |
390-490, gnl|loxAfr1|scaffold_24057 (22416-22541) | |
390-490, gnl|mm7|chr7 (124077725-124077851) | |
390-490, gnl|Mm7|chr7 (124077850-124077750) | |
390-490, gnl|monDom2|scaffold_17 (9240380-9240508) | |
390-490, gnl|oryCun1|scaffold_170407 (43572-43493) | |
390-490, gnl|panTro1|chr18 (31905339-31905467) | |
390-490, gnl|rheMac2|chr20 (29288243-29288370) | |
390-490, gnl|rn3|chr1 (187413755-187413885) | |
390-490, gnl|tetNig1|chr3 (13989935-13989842) | |
390-490, gnl|xenTro1|scaffold_690 (369476-369363) | |
492-617, gnl|bosTau2|chr25 (23039549-23039424) | |
492-617, gnl|canFam2|chr6 (20072210-20072112) | |
492-617, gnl|dasNov1|scaffold_140253 (3535-3624) | |
492-617, gnl|echTel1|scaffold_173398 (398-309) | |
492-617, gnl|hg17|chr16 (31109087-31109185) | |
492-617, gnl|Hg17|chr16 (31109220-31109095) | |
492-617, gnl|loxAfr1|scaffold_24057 (21912-22010) | |
492-617, gnl|mm7|chr7 (124076671-124076769) | |
492-617, gnl|Mm7|chr7 (124076804-124076679) | |
492-617, gnl|monDom2|scaffold_17 (9239970-9240065) | |
492-617, gnl|oryCun1|scaffold_170407 (43712-43612) | |
492-617, gnl|panTro1|chr18 (31904888-31904986) | |
492-617, gnl|rheMac2|chr20 (29287794-29287892) | |
492-617, gnl|rn3|chr1 (187412591-187412689) | |
492-617, gnl|xenTro1|scaffold_690 (369683-369584) | |
715-849, gnl|bosTau2|chr17 (39331668-39331534) | |
715-849, gnl|canFam2|chr26 (25634529-25634675) | |
715-849, gnl|canFam2|chr36 (17465513-17465382) | |
715-849, gnl|danRer3|chrUn (9065838-9065692) | |
715-849, gnl|danRer3|chrUn (9065696-9065827) | |
715-849, gnl|dasNov1|scaffold_64302 (1189-1063) | |
715-849, gnl|dasNov1|scaffold_8146 (43515-43661) | |
715-849, gnl|echTel1|scaffold_266202 (1946-1824) | |
715-849, gnl|echTel1|scaffold_295808 (82612-82466) | |
715-849, gnl|fr1|chrUn (2084373-2084517) | |
715-849, gnl|fr1|chrUn (2084513-2084385) | |
715-849, gnl|galGal2|chr15 (11014784-11014647) | |
715-849, gnl|galGal2|chr15 (11014651-11014781) | |
715-849, gnl|hg17|chr1 (162977198-162977329) | |
715-849, gnl|hg17|chr22 (28016773-28016919) | |
715-849, gnl|Hg17|chr22 (28016915-28016781) | |
715-849, gnl|loxAfr1|scaffold_1384 (176780-176911) | |
715-849, gnl|loxAfr1|scaffold_42274 (2032-1885) | |
715-849, gnl|mm7|chr10 (52157042-52157173) | |
715-849, gnl|mm7|chr11 (5024956-5024810) | |
715-849, gnl|Mm7|chr11 (5024812-5024946) | |
715-849, gnl|monDom2|scaffold_1 (81216653-81216522) | |
715-849, gnl|monDom2|scaffold_89 (3092642-3092788) | |
715-849, gnl|oryCun1|scaffold_170407 (43975-43845) | |
715-849, gnl|oryCun1|scaffold_170407 (43842-43973) | |
715-849, gnl|panTro1|chr1 (145217722-145217853) | |
715-849, gnl|panTro1|chr23_random (8634587-8634733) | |
715-849, gnl|rheMac2|chr10 (73122913-73123059) | |
715-849, gnl|rheMac2|chr10 (73123054-73122924) | |
715-849, gnl|rn3|chr14 (85752665-85752519) | |
715-849, gnl|rn3|chr4 (24172403-24172272) | |
715-849, gnl|tetNig1|chr12 (6652977-6653111) | |
715-849, gnl|tetNig1|chr12 (6653111-6652983) | |
715-849, gnl|xenTro1|scaffold_207 (366558-366707) | |
715-849, gnl|xenTro1|scaffold_207 (366704-366574) | |
1033-1320, gnl|bosTau2|chr25 (23037538-23037248) | |
1033-1320, gnl|canFam2|chr6 (20075285-20074850) | |
1033-1320, gnl|dasNov1|scaffold_12610 (1909-1466) | |
1033-1320, gnl|echTel1|scaffold_156884 (1264-888) | |
1033-1320, gnl|hg17|chr16 (31106646-31107054) | |
1033-1320, gnl|Hg17|chr16 (31107092-31106834) | |
1033-1320, gnl|loxAfr1|scaffold_24057 (19398-19833) | |
1033-1320, gnl|mm7|chr7 (124071938-124072363) | |
1033-1320, gnl|Mm7|chr7 (124072401-124072125) | |
1033-1320, gnl|monDom2|scaffold_17 (9237862-9238302) | |
1033-1320, gnl|oryCun1|scaffold_211153 (36925-36515) | |
1033-1320, gnl|rheMac2|chr20 (29285057-29285463) | |
1033-1320, gnl|rn3|chr1 (187408219-187408635) |
Aligned organism(s): 96 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
40-245, gnl|bosTau2|chr25 (23040920-23040714) | |
40-245, gnl|canFam2|chr6 (20070952-20070751) | |
40-245, gnl|dasNov1|scaffold_140253 (3889-4094) | |
40-245, gnl|echTel1|scaffold_249417 (793-987) | |
40-245, gnl|Hg17|chr16 (31110427-31110218) | |
40-245, gnl|hg17|chr6_random (1471429-1471638) | |
40-245, gnl|loxAfr1|scaffold_24057 (23220-23410) | |
40-245, gnl|mm7|chr7 (124078347-124078588) | |
40-245, gnl|Mm7|chr7 (124078590-124078346) | |
40-245, gnl|monDom2|scaffold_5 (88722822-88723030) | |
40-245, gnl|oryCun1|scaffold_133887 (544-748) | |
40-245, gnl|panTro1|chr5_random (52807518-52807309) | |
40-245, gnl|rheMac2|chr20 (29288927-29289133) | |
40-245, gnl|rn3|chrX (27223224-27222970) | |
390-490, gnl|bosTau2|chr25 (23040164-23040064) | |
390-490, gnl|canFam2|chr6 (20071795-20071669) | |
390-490, gnl|danRer3|chr3 (27198794-27198666) | |
390-490, gnl|dasNov1|scaffold_140253 (3647-3745) | |
390-490, gnl|echTel1|scaffold_173398 (272-172) | |
390-490, gnl|fr1|chrUn (14764036-14764143) | |
390-490, gnl|galGal2|chr19 (4091251-4091354) | |
390-490, gnl|hg17|chr16 (31109538-31109666) | |
390-490, gnl|Hg17|chr16 (31109665-31109565) | |
390-490, gnl|loxAfr1|scaffold_24057 (22416-22541) | |
390-490, gnl|mm7|chr7 (124077725-124077851) | |
390-490, gnl|Mm7|chr7 (124077850-124077750) | |
390-490, gnl|monDom2|scaffold_17 (9240380-9240508) | |
390-490, gnl|oryCun1|scaffold_170407 (43572-43493) | |
390-490, gnl|panTro1|chr18 (31905339-31905467) | |
390-490, gnl|rheMac2|chr20 (29288243-29288370) | |
390-490, gnl|rn3|chr1 (187413755-187413885) | |
390-490, gnl|tetNig1|chr3 (13989935-13989842) | |
390-490, gnl|xenTro1|scaffold_690 (369476-369363) | |
492-617, gnl|bosTau2|chr25 (23039549-23039424) | |
492-617, gnl|canFam2|chr6 (20072210-20072112) | |
492-617, gnl|dasNov1|scaffold_140253 (3535-3624) | |
492-617, gnl|echTel1|scaffold_173398 (398-309) | |
492-617, gnl|hg17|chr16 (31109087-31109185) | |
492-617, gnl|Hg17|chr16 (31109220-31109095) | |
492-617, gnl|loxAfr1|scaffold_24057 (21912-22010) | |
492-617, gnl|mm7|chr7 (124076671-124076769) | |
492-617, gnl|Mm7|chr7 (124076804-124076679) | |
492-617, gnl|monDom2|scaffold_17 (9239970-9240065) | |
492-617, gnl|oryCun1|scaffold_170407 (43712-43612) | |
492-617, gnl|panTro1|chr18 (31904888-31904986) | |
492-617, gnl|rheMac2|chr20 (29287794-29287892) | |
492-617, gnl|rn3|chr1 (187412591-187412689) | |
492-617, gnl|xenTro1|scaffold_690 (369683-369584) | |
715-849, gnl|bosTau2|chr17 (39331668-39331534) | |
715-849, gnl|canFam2|chr26 (25634529-25634675) | |
715-849, gnl|canFam2|chr36 (17465513-17465382) | |
715-849, gnl|danRer3|chrUn (9065838-9065692) | |
715-849, gnl|danRer3|chrUn (9065696-9065827) | |
715-849, gnl|dasNov1|scaffold_64302 (1189-1063) | |
715-849, gnl|dasNov1|scaffold_8146 (43515-43661) | |
715-849, gnl|echTel1|scaffold_266202 (1946-1824) | |
715-849, gnl|echTel1|scaffold_295808 (82612-82466) | |
715-849, gnl|fr1|chrUn (2084373-2084517) | |
715-849, gnl|fr1|chrUn (2084513-2084385) | |
715-849, gnl|galGal2|chr15 (11014784-11014647) | |
715-849, gnl|galGal2|chr15 (11014651-11014781) | |
715-849, gnl|hg17|chr1 (162977198-162977329) | |
715-849, gnl|hg17|chr22 (28016773-28016919) | |
715-849, gnl|Hg17|chr22 (28016915-28016781) | |
715-849, gnl|loxAfr1|scaffold_1384 (176780-176911) | |
715-849, gnl|loxAfr1|scaffold_42274 (2032-1885) | |
715-849, gnl|mm7|chr10 (52157042-52157173) | |
715-849, gnl|mm7|chr11 (5024956-5024810) | |
715-849, gnl|Mm7|chr11 (5024812-5024946) | |
715-849, gnl|monDom2|scaffold_1 (81216653-81216522) | |
715-849, gnl|monDom2|scaffold_89 (3092642-3092788) | |
715-849, gnl|oryCun1|scaffold_170407 (43975-43845) | |
715-849, gnl|oryCun1|scaffold_170407 (43842-43973) | |
715-849, gnl|panTro1|chr1 (145217722-145217853) | |
715-849, gnl|panTro1|chr23_random (8634587-8634733) | |
715-849, gnl|rheMac2|chr10 (73122913-73123059) | |
715-849, gnl|rheMac2|chr10 (73123054-73122924) | |
715-849, gnl|rn3|chr14 (85752665-85752519) | |
715-849, gnl|rn3|chr4 (24172403-24172272) | |
715-849, gnl|tetNig1|chr12 (6652977-6653111) | |
715-849, gnl|tetNig1|chr12 (6653111-6652983) | |
715-849, gnl|xenTro1|scaffold_207 (366558-366707) | |
715-849, gnl|xenTro1|scaffold_207 (366704-366574) | |
1033-1320, gnl|bosTau2|chr25 (23037538-23037248) | |
1033-1320, gnl|canFam2|chr6 (20075285-20074850) | |
1033-1320, gnl|dasNov1|scaffold_12610 (1909-1466) | |
1033-1320, gnl|echTel1|scaffold_156884 (1264-888) | |
1033-1320, gnl|hg17|chr16 (31106646-31107054) | |
1033-1320, gnl|Hg17|chr16 (31107092-31106834) | |
1033-1320, gnl|loxAfr1|scaffold_24057 (19398-19833) | |
1033-1320, gnl|mm7|chr7 (124071938-124072363) | |
1033-1320, gnl|Mm7|chr7 (124072401-124072125) | |
1033-1320, gnl|monDom2|scaffold_17 (9237862-9238302) | |
1033-1320, gnl|oryCun1|scaffold_211153 (36925-36515) | |
1033-1320, gnl|rheMac2|chr20 (29285057-29285463) | |
1033-1320, gnl|rn3|chr1 (187408219-187408635) |
Expressed library(ies): 41 entry(ies) | More info |
Expressed library(ies): 41 entry(ies) | Help | Less info |
ill (1.05356) | |
fce (0.543183) | |
eep (0.490256) | |
med (0.465008) | |
ece (0.45861) | |
lnt (0.426925) | |
elu (0.385356) | |
fty (0.351679) | |
mcp (0.341297) | |
eye (0.341006) | |
cut (0.339847) | |
csp (0.322373) | |
cli (0.305623) | |
eje (0.296501) | |
nca (0.273748) | |
ssp (0.271039) | |
ese (0.253004) | |
eru (0.240096) | |
mgp (0.230681) | |
mas (0.210305) | |
hea (0.204499) | |
fli (0.202881) | |
nbm (0.198649) | |
jej (0.197844) | |
fcc (0.197785) | |
fbs (0.175346) | |
nje (0.16592) | |
cje (0.165235) | |
cki (0.165235) | |
nco (0.161734) | |
cag (0.151194) | |
hyp (0.142837) | |
pty (0.142714) | |
csk (0.140746) | |
che (0.136314) | |
nmm (0.132802) | |
ute (0.132784) | |
cov (0.132153) | |
cly (0.120642) | |
ebs (0.118301) | |
ecc (0.115035) |
Expressed library(ies): 41 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
ill (1.05356) | |
fce (0.543183) | |
eep (0.490256) | |
med (0.465008) | |
ece (0.45861) | |
lnt (0.426925) | |
elu (0.385356) | |
fty (0.351679) | |
mcp (0.341297) | |
eye (0.341006) | |
cut (0.339847) | |
csp (0.322373) | |
cli (0.305623) | |
eje (0.296501) | |
nca (0.273748) | |
ssp (0.271039) | |
ese (0.253004) | |
eru (0.240096) | |
mgp (0.230681) | |
mas (0.210305) | |
hea (0.204499) | |
fli (0.202881) | |
nbm (0.198649) | |
jej (0.197844) | |
fcc (0.197785) | |
fbs (0.175346) | |
nje (0.16592) | |
cje (0.165235) | |
cki (0.165235) | |
nco (0.161734) | |
cag (0.151194) | |
hyp (0.142837) | |
pty (0.142714) | |
csk (0.140746) | |
che (0.136314) | |
nmm (0.132802) | |
ute (0.132784) | |
cov (0.132153) | |
cly (0.120642) | |
ebs (0.118301) | |
ecc (0.115035) |