Non-Coding RNA Search

Ss1.1-Pig4-TMW8039P06.5

Sequence:


               
               TTCAGATCCTGAATATATAAATCTCATGAAGAATAAATTAGATCCAGAAGGGTTAGGAAT
CATACTATTGGGTCCTTTTCTTCAAGAATTTTTTCCTGATCAGGGTTCCAGTGGTCCAGA
GTCTTTTACCGTCTACCACTACAATGGATTGAAGCAATCAAATTACAATGAAAAGGTCAT
GTATGTGGAAGGAACCGCAGTTATTATGGGTTTTGAAGATCCCATGCTGCAGACAGATGA
CACTCCTATCAAACGCTGTCTCCAAACCAAATGGCCCTACATTGAACTACTCTGGACCAC
AGATCGCTCTCCTTCACTAAACTGATTTGCTGAGTATTGCTAAGGAAAATCATAGCAGCT
GTTGAAAGAGGGATGCAGGACTGGCGATTGGCTCCTTTAAGCTATACACTGGTATCACTG
ATGAACTGTAAATAACAATTGACAACACATTTTCAGTGTTTAAGATATGTTTAAATTATT
TGTTTTAAAGCTTTATGATGTTAAAGGTTACCCCTATTTAAACTCTTTATGTGAAATTCA
CTAGCAAAACTAAGCTTTACTCAAAGTTCATCACTGTTGCAGTCAGAGCAGTCATTTATC
AAATTAGAAACACCGTATCACTGTAACATTTTTATATTGAGTATCAAAGTTACGATTTCT
AAACTTCTAGTTGGGGGTTTTACTTCATTTGGGCACAGTTTATTGTTTAAATGATTCTGG
CATGCAATATATCAGCCTCCACACTGAAATGCAGAAGGGTTTAATCTTTGTTATTTCTTT
TCTAAAGTCTGGTTTCCATTAGAAATAATGATATATAACAAATTATCAACCTGGATCTTT
GACAATTGGCTTAGCTCTAGCATGTTTATAAAAAGTAGAAACTATAAGGGAACACTACCA
CTTATTCACAGATATGAGAGGATGTATTAAAAAAAAAAGGAAAGAGAATCTGTTTGATAG
TCTTAACACTGTTGACTTTCACTGTATTGCCAAATATACTTTTCCAAATTTGTCCCAACA
GCCCTGTAAGCCAGCTTTCTTGTATATTTATAAATGTGATAAATGCATGAGAACATCTGT
TATTACATTAGTATATTGCATTATTTATTATGATCCTAGTGGATGGCCTAAATAAACACT
TTTTTTCTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAGATCCTGAATATATAAATCTCATGAAGAATAAATTAGATCCAGAAGGGTTAGGAAT
CATACTATTGGGTCCTTTTCTTCAAGAATTTTTTCCTGATCAGGGTTCCAGTGGTCCAGA
GTCTTTTACCGTCTACCACTACAATGGATTGAAGCAATCAAATTACAATGAAAAGGTCAT
GTATGTGGAAGGAACCGCAGTTATTATGGGTTTTGAAGATCCCATGCTGCAGACAGATGA
CACTCCTATCAAACGCTGTCTCCAAACCAAATGGCCCTACATTGAACTACTCTGGACCAC
AGATCGCTCTCCTTCACTAAACTGATTTGCTGAGTATTGCTAAGGAAAATCATAGCAGCT
GTTGAAAGAGGGATGCAGGACTGGCGATTGGCTCCTTTAAGCTATACACTGGTATCACTG
ATGAACTGTAAATAACAATTGACAACACATTTTCAGTGTTTAAGATATGTTTAAATTATT
TGTTTTAAAGCTTTATGATGTTAAAGGTTACCCCTATTTAAACTCTTTATGTGAAATTCA
CTAGCAAAACTAAGCTTTACTCAAAGTTCATCACTGTTGCAGTCAGAGCAGTCATTTATC
AAATTAGAAACACCGTATCACTGTAACATTTTTATATTGAGTATCAAAGTTACGATTTCT
AAACTTCTAGTTGGGGGTTTTACTTCATTTGGGCACAGTTTATTGTTTAAATGATTCTGG
CATGCAATATATCAGCCTCCACACTGAAATGCAGAAGGGTTTAATCTTTGTTATTTCTTT
TCTAAAGTCTGGTTTCCATTAGAAATAATGATATATAACAAATTATCAACCTGGATCTTT
GACAATTGGCTTAGCTCTAGCATGTTTATAAAAAGTAGAAACTATAAGGGAACACTACCA
CTTATTCACAGATATGAGAGGATGTATTAAAAAAAAAAGGAAAGAGAATCTGTTTGATAG
TCTTAACACTGTTGACTTTCACTGTATTGCCAAATATACTTTTCCAAATTTGTCCCAACA
GCCCTGTAAGCCAGCTTTCTTGTATATTTATAAATGTGATAAATGCATGAGAACATCTGT
TATTACATTAGTATATTGCATTATTTATTATGATCCTAGTGGATGGCCTAAATAAACACT
TTTTTTCTTTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55960427|emb|CAI13817.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55960427|emb|CAI13817.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               171-1152, gnl|bosTau2|chr13 (19409627-19410612)
               

               
               171-1152, gnl|Hg17|chr10 (15861151-15860179)
               

               
               171-1152, gnl|Mm7|chr2 (12287366-12286426)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               171-1152, gnl|bosTau2|chr13 (19409627-19410612)
               

               
               171-1152, gnl|Hg17|chr10 (15861151-15860179)
               

               
               171-1152, gnl|Mm7|chr2 (12287366-12286426)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               kid (0.778412)
               

               
               lin (0.728014)
               

               
               ret (0.643666)
               

               
               fco (0.314416)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.778412)
               

               
               lin (0.728014)
               

               
               ret (0.643666)
               

               
               fco (0.314416)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

	171-1152, gnl\|bosTau2\|chr13 (19409627-19410612)
	171-1152, gnl\|Hg17\|chr10 (15861151-15860179)
	171-1152, gnl\|Mm7\|chr2 (12287366-12286426)

	kid (0.778412)
	lin (0.728014)
	ret (0.643666)
	fco (0.314416)
	mgp (0.230681)
	tes (0.207814)
	sag (0.182715)
	rec (0.17307)
	nje (0.16592)
	liv (0.146284)
	spl (0.143184)
	tra (0.123092)
	pgl (0.118483)