Non-Coding RNA Search

Ss1.1-Pig4-TMW8039P17.3

Sequence:


               
               TTTACTGCGGGCATAGAAGTTATATAGAGTGGTGGAAACAGTATCCTTTTTGGTGGCGGT
GGTGATGGAGGTGTTATAAAAATGTAATTGTCCACCCGTTCTCCATTTTTACACTAGAGC
TGAACAGTAATTTTTAAAATAATGAAAAGAGGCACTTTGGCAATATGAGAAATCTTTTAT
CAGGGAATATACATATATAGTCTTGCAAGTGATGTTGACACGGCCACTTGAATGCTCAGA
AAGAGATTCGGTTAAAAATTTCAAAAGGCAGGGCCTAGCCAAGGGTTTGTTGATAAATGT
TGCAAAGGGCCCTTGATTCTGTACTTGATTCTACATACCGACTTCACTTTCTAGCAGGAG
GGGGCTACTTCTTTAGGCAGCCTGCTCCCAAGACAGTGTCAGCACTATTTGAGAAAATAG
GAGTATTTATTTTTTTAAGTCCATATATTTAGAAATCCAAGATCAGGAAGAAGTCTATAT
TCCCATCATTAACAAAGTAGAATTTTTTTTAAAAGATGATATTGAAATACAATTTCTTAC
CATTATTTTACTTACCAATACAGATGTTATCGATATCTTTAAGGCTGGCTTTCCCGGTGT
TGTGTAATGACTGAGTGTATCTAAATTGTAATAATTTAAAATGGACAAACATGTAAAACA
AAACTGTTGTTAAAAGATTCCTAAGGATATAGATTTTTATTATTTATTTTCTTTTTGACT
AGGAAGAGTTTATAAATAAATGTCATGGAAAACCTTTGATCTTAATAAAGTATCTTCAAA
TTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTACTGCGGGCATAGAAGTTATATAGAGTGGTGGAAACAGTATCCTTTTTGGTGGCGGT
GGTGATGGAGGTGTTATAAAAATGTAATTGTCCACCCGTTCTCCATTTTTACACTAGAGC
TGAACAGTAATTTTTAAAATAATGAAAAGAGGCACTTTGGCAATATGAGAAATCTTTTAT
CAGGGAATATACATATATAGTCTTGCAAGTGATGTTGACACGGCCACTTGAATGCTCAGA
AAGAGATTCGGTTAAAAATTTCAAAAGGCAGGGCCTAGCCAAGGGTTTGTTGATAAATGT
TGCAAAGGGCCCTTGATTCTGTACTTGATTCTACATACCGACTTCACTTTCTAGCAGGAG
GGGGCTACTTCTTTAGGCAGCCTGCTCCCAAGACAGTGTCAGCACTATTTGAGAAAATAG
GAGTATTTATTTTTTTAAGTCCATATATTTAGAAATCCAAGATCAGGAAGAAGTCTATAT
TCCCATCATTAACAAAGTAGAATTTTTTTTAAAAGATGATATTGAAATACAATTTCTTAC
CATTATTTTACTTACCAATACAGATGTTATCGATATCTTTAAGGCTGGCTTTCCCGGTGT
TGTGTAATGACTGAGTGTATCTAAATTGTAATAATTTAAAATGGACAAACATGTAAAACA
AAACTGTTGTTAAAAGATTCCTAAGGATATAGATTTTTATTATTTATTTTCTTTTTGACT
AGGAAGAGTTTATAAATAAATGTCATGGAAAACCTTTGATCTTAATAAAGTATCTTCAAA
TTAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               377-792, gnl|bosTau2|chr27 (13350524-13350959)
               

               
               377-792, gnl|Hg17|chr10 (28380514-28380145)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               377-792, gnl|bosTau2|chr27 (13350524-13350959)
               

               
               377-792, gnl|Hg17|chr10 (28380514-28380145)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               vin (0.332557)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	377-792, gnl\|bosTau2\|chr27 (13350524-13350959)
	377-792, gnl\|Hg17\|chr10 (28380514-28380145)

	vin (0.332557)
	kid (0.259471)
	thg (0.253582)
	tra (0.246184)
	cbe (0.239234)
	sto (0.179824)
	gul (0.177588)
	rec (0.17307)
	mga (0.160205)
	liv (0.146284)
	med (0.116252)
	spc (0.113366)