Ss1.1-Pig4-TMW8039P18.3
|
CGGGAAAAGTCCTTTCTCCTTGCCTGCAGCGGTCCGGTACCTACAGCCGCGCCAGCACCC
ACGCCATGCCTGCTGCCGGCTCCGAACTGCCTCGCCCGCCATCGCCGCCTCCCGCTCAGG
AGCAGGGCGCCGAGCCGCGGCCGCAGCCCCACGGGGAGCTGCAGTACCTGGGGCAGATCG
AGCACATCCTCCGTTGCGGCTTCCGGAAGGACGACCGCACGGGCACCGGCACGCTGTCGG
TGTTCGGCATGCAGGCGCGCTACAGCCTGAGAGATCAGTTTCCTCTGCTGACAACCAAAC
GTGTTTTCTGGAAGGGTGTTTTGGAGGAGTTGCTGTGGTTTATCAAGGGATCCACAAACG
CTAAGGAACTGTCCTCCAAGGGAGTGAAAATCTGGGATGCCAATGGGTCCCGAGACTTCT
TGGACAGCCTGGGATTCTCCTCCAGAGAAGAAGGGGATTTAGGCCCTGTTTATGGCTTTC
AGTGGAGGCATTTTGGAGCTGAATACAAAGATATGAATTCAGATTATTCAGGGCAAGGAG
TAGACCAACTGCAAAAAGTGATCGACACAATCAAAACCAACCCTGACGACAGAAGAATCA
TCCTGTGTGCTTGGAATCCGAAAGATCTCCCTCTCATGGCCCTCCCCCCATGCCATGCCC
TTTGCCAGTTCTACGTGGTAAATGGGGAGCTGTCCTGCCAGTTGTACCAGCGGTCGGGAG
ACATGGGACTGGGTGTGCCCTTCAACATCGCCAGCTACGCCCTGCTCACCTACATGATCG
CACACATCACAGGCCTGAAGCCAGGTGACTTCGTACACACGTTGGGAGATGCCCACATTT
ACCTGAATCACATTGAGCCGCTGAAAATACAGCTTCAGCGGGAACCAAGGCCTTTCCCGA
AACTCAAAATCCTTCGAAAAGTTGAGAAAATCGATGACTTCAAGGCTGAAGACTTTCAGA
TCGAAGGTTACAATCCTCATCCGACTATTAAAATGGAAATGGCTGTTTAGAGTGCTTTTA
AAGGAGTTGTTTGAAGGATATTTACGCCCAGGTAAAAGTTCATTTTGCTCTAAAGGAGGA
AGGAACTGGGTCAAAAACCTGTTGGTGATCTATCAGTTATTATTCATTAACTTTTAAGGG
TGTTGCCCCTGGCAACTAGAACTGTGCTGGTTCTCTTAGTAAATATAAGGCCTCTAGTTT
GGTTAAACTGAGAATGTGTGATAGTGTCCAGATTGCAAATGAAGACAGGAGACAGAATTT
ATATACTCTGAAGAAAAATATGTATATGCTTCTCAATACCATACTCAAACGTCCCAATTC
AAACTTCATATTTTTATAAAGATGTTTTATAATTTCAGGAATTATGTTTCTATAAAGATG
TTTTATAATTTCAAGAATTATATCTAACTACTCTCCCAAATTTAAGCAAACTCAGATAAC
ACCATCCATTAGGATAATGCCTGGTGTGGTTATGAACATTTCAAACTATATTTGTTTTAT
ATCTTGCTATAATAAATGTTCTGTATTCATCTGTTTTTGTTTTTTTAATTCCATGTTGCC
ATTTATCTGCTTAGTTCCTGCCTAAAATAGATTTAACTGAACCCTCCTAAATAAACACAT
GCGCTGTGTTCTTGTTTGGATGCTGCTTAGATGGGTAGGGTATATGCTAATTTATGACAA
CTGTTTTTTGTTGTTGTTTTTTTTAAAGAATTATTCCAACATGCTGCTTATTTTCAAAGT
ACAGTTTAATGTCTAGGTACCAGCACTTGATAGAAATTTTAAGATAGTGTCTGCCTGGAC
TTTGAGTTGGATCTATTTTTGCTTAAGGATTATGTAGGAGAATATGTGTTGATTTGCTAA
AAGAATAAAGAAATGACAACTAAGCTGATGCCTGAGGTTGGTATGACTTTCAGCCGAACT
TGTTTTGATTGGTAGGATGATTTTTTTTTTTCCTCCCTATTTTTGTAAAACCATACCCAA
GAAATTTTAAGC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGGGAAAAGTCCTTTCTCCTTGCCTGCAGCGGTCCGGTACCTACAGCCGCGCCAGCACCC
ACGCCATGCCTGCTGCCGGCTCCGAACTGCCTCGCCCGCCATCGCCGCCTCCCGCTCAGG
AGCAGGGCGCCGAGCCGCGGCCGCAGCCCCACGGGGAGCTGCAGTACCTGGGGCAGATCG
AGCACATCCTCCGTTGCGGCTTCCGGAAGGACGACCGCACGGGCACCGGCACGCTGTCGG
TGTTCGGCATGCAGGCGCGCTACAGCCTGAGAGATCAGTTTCCTCTGCTGACAACCAAAC
GTGTTTTCTGGAAGGGTGTTTTGGAGGAGTTGCTGTGGTTTATCAAGGGATCCACAAACG
CTAAGGAACTGTCCTCCAAGGGAGTGAAAATCTGGGATGCCAATGGGTCCCGAGACTTCT
TGGACAGCCTGGGATTCTCCTCCAGAGAAGAAGGGGATTTAGGCCCTGTTTATGGCTTTC
AGTGGAGGCATTTTGGAGCTGAATACAAAGATATGAATTCAGATTATTCAGGGCAAGGAG
TAGACCAACTGCAAAAAGTGATCGACACAATCAAAACCAACCCTGACGACAGAAGAATCA
TCCTGTGTGCTTGGAATCCGAAAGATCTCCCTCTCATGGCCCTCCCCCCATGCCATGCCC
TTTGCCAGTTCTACGTGGTAAATGGGGAGCTGTCCTGCCAGTTGTACCAGCGGTCGGGAG
ACATGGGACTGGGTGTGCCCTTCAACATCGCCAGCTACGCCCTGCTCACCTACATGATCG
CACACATCACAGGCCTGAAGCCAGGTGACTTCGTACACACGTTGGGAGATGCCCACATTT
ACCTGAATCACATTGAGCCGCTGAAAATACAGCTTCAGCGGGAACCAAGGCCTTTCCCGA
AACTCAAAATCCTTCGAAAAGTTGAGAAAATCGATGACTTCAAGGCTGAAGACTTTCAGA
TCGAAGGTTACAATCCTCATCCGACTATTAAAATGGAAATGGCTGTTTAGAGTGCTTTTA
AAGGAGTTGTTTGAAGGATATTTACGCCCAGGTAAAAGTTCATTTTGCTCTAAAGGAGGA
AGGAACTGGGTCAAAAACCTGTTGGTGATCTATCAGTTATTATTCATTAACTTTTAAGGG
TGTTGCCCCTGGCAACTAGAACTGTGCTGGTTCTCTTAGTAAATATAAGGCCTCTAGTTT
GGTTAAACTGAGAATGTGTGATAGTGTCCAGATTGCAAATGAAGACAGGAGACAGAATTT
ATATACTCTGAAGAAAAATATGTATATGCTTCTCAATACCATACTCAAACGTCCCAATTC
AAACTTCATATTTTTATAAAGATGTTTTATAATTTCAGGAATTATGTTTCTATAAAGATG
TTTTATAATTTCAAGAATTATATCTAACTACTCTCCCAAATTTAAGCAAACTCAGATAAC
ACCATCCATTAGGATAATGCCTGGTGTGGTTATGAACATTTCAAACTATATTTGTTTTAT
ATCTTGCTATAATAAATGTTCTGTATTCATCTGTTTTTGTTTTTTTAATTCCATGTTGCC
ATTTATCTGCTTAGTTCCTGCCTAAAATAGATTTAACTGAACCCTCCTAAATAAACACAT
GCGCTGTGTTCTTGTTTGGATGCTGCTTAGATGGGTAGGGTATATGCTAATTTATGACAA
CTGTTTTTTGTTGTTGTTTTTTTTAAAGAATTATTCCAACATGCTGCTTATTTTCAAAGT
ACAGTTTAATGTCTAGGTACCAGCACTTGATAGAAATTTTAAGATAGTGTCTGCCTGGAC
TTTGAGTTGGATCTATTTTTGCTTAAGGATTATGTAGGAGAATATGTGTTGATTTGCTAA
AAGAATAAAGAAATGACAACTAAGCTGATGCCTGAGGTTGGTATGACTTTCAGCCGAACT
TGTTTTGATTGGTAGGATGATTTTTTTTTTTCCTCCCTATTTTTGTAAAACCATACCCAA
GAAATTTTAAGC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
142-1135, gnl|bosTau2|chr13 (33882198-33883189) |
|
142-1135, gnl|Hg17|chr18 (647818-663137) |
|
142-1135, gnl|Mm7|chr10 (87525104-87525995) |
| |
|
1333-1651, gnl|bosTau2|chr24 (25993198-25993487) |
|
1333-1651, gnl|canFam2|chr7 (70538396-70538617) |
|
1333-1651, gnl|dasNov1|scaffold_46095 (229-22) |
|
1333-1651, gnl|echTel1|scaffold_309234 (7880-7711) |
|
1333-1651, gnl|hg17|chr18 (663249-663497) |
|
1333-1651, gnl|Hg17|chr18 (663281-663611) |
|
1333-1651, gnl|loxAfr1|scaffold_13143 (25624-25425) |
|
1333-1651, gnl|oryCun1|scaffold_205623 (86441-86641) |
|
1333-1651, gnl|panTro1|chr17 (12141176-12140933) |
|
1333-1651, gnl|rheMac2|chr18 (13431068-13430858) |
| |
|
1667-1992, gnl|bosTau2|chr24 (25993783-25994103) |
|
1667-1992, gnl|Hg17|chr18 (663938-664263) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
142-1135, gnl|bosTau2|chr13 (33882198-33883189) |
|
142-1135, gnl|Hg17|chr18 (647818-663137) |
|
142-1135, gnl|Mm7|chr10 (87525104-87525995) |
| |
|
1333-1651, gnl|bosTau2|chr24 (25993198-25993487) |
|
1333-1651, gnl|canFam2|chr7 (70538396-70538617) |
|
1333-1651, gnl|dasNov1|scaffold_46095 (229-22) |
|
1333-1651, gnl|echTel1|scaffold_309234 (7880-7711) |
|
1333-1651, gnl|hg17|chr18 (663249-663497) |
|
1333-1651, gnl|Hg17|chr18 (663281-663611) |
|
1333-1651, gnl|loxAfr1|scaffold_13143 (25624-25425) |
|
1333-1651, gnl|oryCun1|scaffold_205623 (86441-86641) |
|
1333-1651, gnl|panTro1|chr17 (12141176-12140933) |
|
1333-1651, gnl|rheMac2|chr18 (13431068-13430858) |
| |
|
1667-1992, gnl|bosTau2|chr24 (25993783-25994103) |
|
1667-1992, gnl|Hg17|chr18 (663938-664263) |
|
kid (0.648677) |
|
sin (0.524843) |
|
thg (0.507164) |
|
ova (0.387397) |
|
elu (0.385356) |
|
tra (0.369276) |
|
sag (0.36543) |
|
fty (0.351679) |
|
eli (0.303628) |
|
liv (0.292569) |
|
lin (0.291206) |
|
lnt (0.284616) |
|
ret (0.257467) |
|
mgp (0.230681) |
|
cty (0.20816) |
|
col (0.195008) |
|
ill (0.175593) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cje (0.165235) |
|
nco (0.161734) |
|
fco (0.157208) |
|
ski (0.146735) |
|
pty (0.142714) |
|
che (0.136314) |
|
eep (0.122564) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
kid (0.648677) |
|
sin (0.524843) |
|
thg (0.507164) |
|
ova (0.387397) |
|
elu (0.385356) |
|
tra (0.369276) |
|
sag (0.36543) |
|
fty (0.351679) |
|
eli (0.303628) |
|
liv (0.292569) |
|
lin (0.291206) |
|
lnt (0.284616) |
|
ret (0.257467) |
|
mgp (0.230681) |
|
cty (0.20816) |
|
col (0.195008) |
|
ill (0.175593) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cje (0.165235) |
|
nco (0.161734) |
|
fco (0.157208) |
|
ski (0.146735) |
|
pty (0.142714) |
|
che (0.136314) |
|
eep (0.122564) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
eje (0.0988338) |
