Ss1.1-Pig4-TMW8039P20.3
|
GGGTTGTGGCAAGATTGTCTTTTCAATTTTGGAGAGTTTTCCTGTGGCTACAAGGCAAGT
AACGGGTTGGAAAAAGTCTGACTGTAAGTGTTGGACACCTTCATAGTGTAGTGTTTTAGT
GACTTTTTTTATACGGTTCTTGTAAATTAGATACGTGTAGTGGTGTTTCAGAATGTTTGT
TTATGCACTAGTTCAGACAACTTTCCCTGTTACTTGTTCTTGATAAGTGAAAACTGCAGG
GAAATAAAAATACATATCAAAACATGGACATGCTGCATATGTGTTTATTTCACAATGTGC
ACACAGTATAAGTGAAAATTTAAGGGAGGTGATAGCACTCAACAGCACTTTTCATTTTCA
CAGTGCTTTCCAAGCATTAATGAAAAGAATTATAAGAAGCTCATCTGTGGGCACTATTGG
GTTTCAGATAATCCAATATAAACTACCTTTGATATGAAAAGTTCTTAAAATATTTTACAG
AATGTAAGCAATTTGCAGAATAACATTCATTGAAATCTCATAAATGAGCCTCATTTTATA
AATAAAAGTTTAGAGTAGGATTATATTGCAAGGGGGTTTTGTCAAGTAAGTACTGGGAAA
TGTAAATATTTTTAATGAATATGATTAAAACCATTTCAAACTTCATAATTTTATACTTTA
CATTTTTTTATATCTGCAGTCCTGAAAGTTGTAAACTGATATGTCAGTTGAATTAATGGG
CCAAGATTTCTGCTGAGAGTGTTTTTTATTCAGGTCCTAAATGTGTAAAGCAATTTATGG |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGTTGTGGCAAGATTGTCTTTTCAATTTTGGAGAGTTTTCCTGTGGCTACAAGGCAAGT
AACGGGTTGGAAAAAGTCTGACTGTAAGTGTTGGACACCTTCATAGTGTAGTGTTTTAGT
GACTTTTTTTATACGGTTCTTGTAAATTAGATACGTGTAGTGGTGTTTCAGAATGTTTGT
TTATGCACTAGTTCAGACAACTTTCCCTGTTACTTGTTCTTGATAAGTGAAAACTGCAGG
GAAATAAAAATACATATCAAAACATGGACATGCTGCATATGTGTTTATTTCACAATGTGC
ACACAGTATAAGTGAAAATTTAAGGGAGGTGATAGCACTCAACAGCACTTTTCATTTTCA
CAGTGCTTTCCAAGCATTAATGAAAAGAATTATAAGAAGCTCATCTGTGGGCACTATTGG
GTTTCAGATAATCCAATATAAACTACCTTTGATATGAAAAGTTCTTAAAATATTTTACAG
AATGTAAGCAATTTGCAGAATAACATTCATTGAAATCTCATAAATGAGCCTCATTTTATA
AATAAAAGTTTAGAGTAGGATTATATTGCAAGGGGGTTTTGTCAAGTAAGTACTGGGAAA
TGTAAATATTTTTAATGAATATGATTAAAACCATTTCAAACTTCATAATTTTATACTTTA
CATTTTTTTATATCTGCAGTCCTGAAAGTTGTAAACTGATATGTCAGTTGAATTAATGGG
CCAAGATTTCTGCTGAGAGTGTTTTTTATTCAGGTCCTAAATGTGTAAAGCAATTTATGG |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
160-333, BX097143 Soares placenta Nb2HP Homo sapiens cDNA clone
(emb|BX097143.1|), blast E-value=0, identity=98.86% |
|
160-333, zp06h10.r1 Stratagene ovarian cancer (#937219) Homo sapiens cDNA
(gb|AA173669.1|), blast E-value=0, identity=98.86% |
|
160-333, 601435023F1 NIH_MGC_72 Homo sapiens cDNA clone IMAGE (gb|BE892196.1|),
blast E-value=0, identity=98.86% |
|
160-333, UI-E-EJ0-aie-p-11-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone
(gb|BM725402.1|), blast E-value=0, identity=98.86% |
|
160-333, LIB3733-004-A1-K1-G4 LIB3733 Canis familiaris cDNA clone
(gb|DN370420.1|), blast E-value=0, identity=98.28% |
|
160-333, yj31d03.r1 Soares placenta Nb2HP Homo sapiens cDNA clone
(gb|H00837.1|), blast E-value=0, identity=98.86% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
160-333, BX097143 Soares placenta Nb2HP Homo sapiens cDNA clone
(emb|BX097143.1|), blast E-value=0, identity=98.86% |
|
160-333, zp06h10.r1 Stratagene ovarian cancer (#937219) Homo sapiens cDNA
(gb|AA173669.1|), blast E-value=0, identity=98.86% |
|
160-333, 601435023F1 NIH_MGC_72 Homo sapiens cDNA clone IMAGE (gb|BE892196.1|),
blast E-value=0, identity=98.86% |
|
160-333, UI-E-EJ0-aie-p-11-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone
(gb|BM725402.1|), blast E-value=0, identity=98.86% |
|
160-333, LIB3733-004-A1-K1-G4 LIB3733 Canis familiaris cDNA clone
(gb|DN370420.1|), blast E-value=0, identity=98.28% |
|
160-333, yj31d03.r1 Soares placenta Nb2HP Homo sapiens cDNA clone
(gb|H00837.1|), blast E-value=0, identity=98.86% |
Human gene identifier and UTR site,
human gene reading direction
|
1-333, gnl|bosTau2|chr2 (33455552-33455883) |
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1-333, gnl|Hg17|chr2 (149378604-149378936) |
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1-333, gnl|Mm7|chr2 (49558233-49558546) |
| |
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368-778, gnl|bosTau2|chr2 (33455883-33456280) |
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368-778, gnl|canFam2|chr19 (53506249-53506517) |
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368-778, gnl|dasNov1|scaffold_19946 (42834-42573) |
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368-778, gnl|echTel1|scaffold_322132 (45523-45793) |
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368-778, gnl|hg17|chr2 (149379023-149379290) |
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368-778, gnl|Hg17|chr2 (149379022-149379380) |
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368-778, gnl|loxAfr1|scaffold_2070 (82849-83112) |
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368-778, gnl|mm7|chr2 (49558644-49558906) |
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368-778, gnl|Mm7|chr2 (49558642-49558991) |
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368-778, gnl|monDom2|scaffold_2 (39028719-39028985) |
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368-778, gnl|oryCun1|scaffold_131570 (380-637) |
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368-778, gnl|panTro1|chr13_random (14676125-14675858) |
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368-778, gnl|rheMac2|chr12 (12349439-12349706) |
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368-778, gnl|rn3|chr3 (30433176-30433437) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-333, gnl|bosTau2|chr2 (33455552-33455883) |
|
1-333, gnl|Hg17|chr2 (149378604-149378936) |
|
1-333, gnl|Mm7|chr2 (49558233-49558546) |
| |
|
368-778, gnl|bosTau2|chr2 (33455883-33456280) |
|
368-778, gnl|canFam2|chr19 (53506249-53506517) |
|
368-778, gnl|dasNov1|scaffold_19946 (42834-42573) |
|
368-778, gnl|echTel1|scaffold_322132 (45523-45793) |
|
368-778, gnl|hg17|chr2 (149379023-149379290) |
|
368-778, gnl|Hg17|chr2 (149379022-149379380) |
|
368-778, gnl|loxAfr1|scaffold_2070 (82849-83112) |
|
368-778, gnl|mm7|chr2 (49558644-49558906) |
|
368-778, gnl|Mm7|chr2 (49558642-49558991) |
|
368-778, gnl|monDom2|scaffold_2 (39028719-39028985) |
|
368-778, gnl|oryCun1|scaffold_131570 (380-637) |
|
368-778, gnl|panTro1|chr13_random (14676125-14675858) |
|
368-778, gnl|rheMac2|chr12 (12349439-12349706) |
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368-778, gnl|rn3|chr3 (30433176-30433437) |
|
sag (0.182715) |
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kid (0.129735) |
|
sag (0.182715) |
|
kid (0.129735) |
