Non-Coding RNA Search

Ss1.1-Pig4-TMW8039P23.3

Sequence:


               
               TTTTTTTTAAGTGTAATTGATTTACAATGTGGTGCCAATTTCTGCTGCAAAGTGACCCAG
TCTTTCAGAGATTGATTTTGAGTTATATTATCCCCTTCGATGGTTCTCTTTTCTTCTAGA
AAATGTCCAGTCACTGTCAAAGTTTTATGTGGTTTCGTTTCCCCAGTAAAGAGGAAACGA
CATCCCTAATGCAGTGGCACAGCTGTCAAAGGATGCTCCTGTTGACTTCCTGCAAGTGGA
GCTGTCCAGAGGGCCTCGGCTGGACTTGGTGTCACATTGGTCAGGCCTTCGTCTTCCTCC
TCGTTGTTAATGGCCGTATACTTTTTATCAACTGGACATTTCCTCATTTGTTTTACAGCT
CTGTTACTGAGTATTTTGTTTGTTTCTTAGTGTTATTATTACAAACAATGCTGTTCCGAG
CAACCCACATAGGTTTTACCTTCTATTGGAATATTTTCTCTGTATAGGTTTTAGTCTTAA
GCCAATTTAGTAATGGGGTATTTTCCCCAAGTTTATTTTTTCACTGAAAATTTTTCCTCC
AACTTTTATTTTCCTATTTTTTTTTTTCCTGGAAAAATGGAGTAACCTAGCAGTTTCAAT
ATTGAAGACTGAAGTTTTTAAAAAATTGAAATTCAAGGCACTTATCTTTTAGAATTCAGT
TAGCAAAGTGTTTAGGCTTTCTGGGTTGGCAGCAGTGTTAAAGAGACTAGTGGTACCTGT
GTGTTTATGCTTGTGGGTTGAAAACACCTCAGACTCTTTGGTTGCCATCCTTCACATACT
GCAGTAAAATGGCTTTCGTGAAGTGCAATATGGGAGTCACATGACTGCTGCTTACATGTA
TCCTATATTCACATATATATGCCCATGTATAAAAAGGCAGTCACGTGGCTGCTGCTTACA
TATATCCTATATACACATATACATGCCTATATGTAAACAAAGCAGTGAGCTCTGTAAACA
GACCGTTGAGAAAAGTCGGACCTTTTGAATAGGAGTGGTCTTTTAGATCCGGGTTTGTAC
TGAACTAACAAAGATACGCAGAGACTACTGACTTTTATAAACCTTTTGAACTCTCGTTAA
GCCTTAAGATTAAACAAATTCAATGTTGAAATTTCTGTGAGGCTCTATTTTTGCTTTGAT
TGTACATTGAGGACAACGGAAAGTTCCTGGCTTCCACTAAGGTTTTGGATTTGAAGAGAC
TAAGCTAACATACAGAGGAAAGATTTCCATCATGTGGCAGAAAATGAGACCCTAAGATTC
TGTTTAGCCTTACTTTTCATAACAGAAAAGAAACAGAAAAGGTAAAACAACCGTTTCTTC
TGGAAAGAGCAGGGATGGTTCACCCAGGAAGGATTTTTGTGACTGAATCGGCAGTGCCTG
TTCTAGTTACAGATGCGCTGCAAACACTTTAGCTGGCAGTGGGGGCCTCTGCAAAACAGA
CAGTGTCTGTGATAATTAAACTCTGATACCGAGAAATGACCGCTTTATTGCACACCTCAG
ATTCATGAGTCTAAAGTGAGATGTGAATTTCTATGGAGTACTTTTAAAGAGTGATACCAA
AAATCATAAAATTAAGATTGATGTTTGTTGTCAGTTACATAGGTATAAATAAGTAGGTAT
GAATACAAATTGTATTTCCTCTTTTAATTTCAGGGGAGCTGTTGTTTGGGAACACAATTG
GGTAACTGTCATTTTCAGTCACACTGATGATACCAGCAAGCTAATGTCCTGTCTTTTAGG
ATATGCATGGTACATGCTAAAAATCCTATAAGGTCCTGGAGAGCTTTCATTTAATTATTC
ATTAAAGAAGCATTTATTTTCATATCGTTAAGTGTGAAGTTTTTTGATTGTTAATAAAAG
AATCTGTTAATCATCAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTAAGTGTAATTGATTTACAATGTGGTGCCAATTTCTGCTGCAAAGTGACCCAG
TCTTTCAGAGATTGATTTTGAGTTATATTATCCCCTTCGATGGTTCTCTTTTCTTCTAGA
AAATGTCCAGTCACTGTCAAAGTTTTATGTGGTTTCGTTTCCCCAGTAAAGAGGAAACGA
CATCCCTAATGCAGTGGCACAGCTGTCAAAGGATGCTCCTGTTGACTTCCTGCAAGTGGA
GCTGTCCAGAGGGCCTCGGCTGGACTTGGTGTCACATTGGTCAGGCCTTCGTCTTCCTCC
TCGTTGTTAATGGCCGTATACTTTTTATCAACTGGACATTTCCTCATTTGTTTTACAGCT
CTGTTACTGAGTATTTTGTTTGTTTCTTAGTGTTATTATTACAAACAATGCTGTTCCGAG
CAACCCACATAGGTTTTACCTTCTATTGGAATATTTTCTCTGTATAGGTTTTAGTCTTAA
GCCAATTTAGTAATGGGGTATTTTCCCCAAGTTTATTTTTTCACTGAAAATTTTTCCTCC
AACTTTTATTTTCCTATTTTTTTTTTTCCTGGAAAAATGGAGTAACCTAGCAGTTTCAAT
ATTGAAGACTGAAGTTTTTAAAAAATTGAAATTCAAGGCACTTATCTTTTAGAATTCAGT
TAGCAAAGTGTTTAGGCTTTCTGGGTTGGCAGCAGTGTTAAAGAGACTAGTGGTACCTGT
GTGTTTATGCTTGTGGGTTGAAAACACCTCAGACTCTTTGGTTGCCATCCTTCACATACT
GCAGTAAAATGGCTTTCGTGAAGTGCAATATGGGAGTCACATGACTGCTGCTTACATGTA
TCCTATATTCACATATATATGCCCATGTATAAAAAGGCAGTCACGTGGCTGCTGCTTACA
TATATCCTATATACACATATACATGCCTATATGTAAACAAAGCAGTGAGCTCTGTAAACA
GACCGTTGAGAAAAGTCGGACCTTTTGAATAGGAGTGGTCTTTTAGATCCGGGTTTGTAC
TGAACTAACAAAGATACGCAGAGACTACTGACTTTTATAAACCTTTTGAACTCTCGTTAA
GCCTTAAGATTAAACAAATTCAATGTTGAAATTTCTGTGAGGCTCTATTTTTGCTTTGAT
TGTACATTGAGGACAACGGAAAGTTCCTGGCTTCCACTAAGGTTTTGGATTTGAAGAGAC
TAAGCTAACATACAGAGGAAAGATTTCCATCATGTGGCAGAAAATGAGACCCTAAGATTC
TGTTTAGCCTTACTTTTCATAACAGAAAAGAAACAGAAAAGGTAAAACAACCGTTTCTTC
TGGAAAGAGCAGGGATGGTTCACCCAGGAAGGATTTTTGTGACTGAATCGGCAGTGCCTG
TTCTAGTTACAGATGCGCTGCAAACACTTTAGCTGGCAGTGGGGGCCTCTGCAAAACAGA
CAGTGTCTGTGATAATTAAACTCTGATACCGAGAAATGACCGCTTTATTGCACACCTCAG
ATTCATGAGTCTAAAGTGAGATGTGAATTTCTATGGAGTACTTTTAAAGAGTGATACCAA
AAATCATAAAATTAAGATTGATGTTTGTTGTCAGTTACATAGGTATAAATAAGTAGGTAT
GAATACAAATTGTATTTCCTCTTTTAATTTCAGGGGAGCTGTTGTTTGGGAACACAATTG
GGTAACTGTCATTTTCAGTCACACTGATGATACCAGCAAGCTAATGTCCTGTCTTTTAGG
ATATGCATGGTACATGCTAAAAATCCTATAAGGTCCTGGAGAGCTTTCATTTAATTATTC
ATTAAAGAAGCATTTATTTTCATATCGTTAAGTGTGAAGTTTTTTGATTGTTAATAAAAG
AATCTGTTAATCATCAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               63-523, gnl|bosTau2|chr9 (55513342-55512868)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-523, gnl|bosTau2|chr9 (55513342-55512868)

Expressed library(ies): 50 entry(ies)

More info

Expressed library(ies): 50 entry(ies)

Help | Less info


               
               mga (2.72349)
               

               
               cbl (1.95156)
               

               
               isp (1.65414)
               

               
               lyg (1.06482)
               

               
               sug (0.891039)
               

               
               hea (0.817996)
               

               
               kid (0.778412)
               

               
               rec (0.692281)
               

               
               vin (0.665115)
               

               
               tbr (0.616713)
               

               
               liv (0.585137)
               

               
               pro (0.512033)
               

               
               tra (0.492368)
               

               
               mgp (0.461361)
               

               
               bfe (0.449573)
               

               
               fat (0.442282)
               

               
               ski (0.440205)
               

               
               col (0.390016)
               

               
               thg (0.380373)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               fco (0.314416)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               cte (0.29274)
               

               
               ldo (0.291008)
               

               
               pty (0.285429)
               

               
               csk (0.281492)
               

               
               ste (0.270416)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 50 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (2.72349)
               

               
               cbl (1.95156)
               

               
               isp (1.65414)
               

               
               lyg (1.06482)
               

               
               sug (0.891039)
               

               
               hea (0.817996)
               

               
               kid (0.778412)
               

               
               rec (0.692281)
               

               
               vin (0.665115)
               

               
               tbr (0.616713)
               

               
               liv (0.585137)
               

               
               pro (0.512033)
               

               
               tra (0.492368)
               

               
               mgp (0.461361)
               

               
               bfe (0.449573)
               

               
               fat (0.442282)
               

               
               ski (0.440205)
               

               
               col (0.390016)
               

               
               thg (0.380373)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               fco (0.314416)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               cte (0.29274)
               

               
               ldo (0.291008)
               

               
               pty (0.285429)
               

               
               csk (0.281492)
               

               
               ste (0.270416)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	mga (2.72349)
	cbl (1.95156)
	isp (1.65414)
	lyg (1.06482)
	sug (0.891039)
	hea (0.817996)
	kid (0.778412)
	rec (0.692281)
	vin (0.665115)
	tbr (0.616713)
	liv (0.585137)
	pro (0.512033)
	tra (0.492368)
	mgp (0.461361)
	bfe (0.449573)
	fat (0.442282)
	ski (0.440205)
	col (0.390016)
	thg (0.380373)
	sag (0.36543)
	gul (0.355177)
	fco (0.314416)
	cty (0.31224)
	sme (0.305437)
	lun (0.300978)
	cte (0.29274)
	ldo (0.291008)
	pty (0.285429)
	csk (0.281492)
	ste (0.270416)
	ret (0.257467)
	bla (0.248694)
	clu (0.239292)
	cbe (0.239234)
	pan (0.23596)
	spc (0.226732)
	mas (0.210305)
	fcc (0.197785)
	nep (0.183925)
	mcp (0.170648)
	eye (0.170503)
	fhi (0.169578)
	nco (0.161734)
	lin (0.145603)
	hyp (0.142837)
	hlv (0.139256)
	ute (0.132784)
	cov (0.132153)
	jca (0.11396)
	jej (0.0989218)