Ss1.1-Pig4-TMW8040A06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGATACGCCTGGCGGCCTGATAGTGTTTTCCTTGTCTTTTCTTACTCTCCAGTCTCCCG TCCTTCCTTTTTTCTTCCGTCCCAGGCTCATTTGACCCTGGCGAGGCGGCAGGCGGGTTC TGCTTCCCAGCCGTCCTGGGAGTCCCTCGCTAGCCGAGGACGGGTTCCTGGGAGCCGCGC GCGCACTTCTTTCTCCTCGTCGTCGTCTTCCCAGGGCCAGGCGCGGGGACAGAGAGTCGC CTCCCCCGCTCCTCGGAGCGGTGGCGGCCGTGCTGCCTCCGGATTGCGCTTGCGAAAGGA CCTCGAGGAGGAGTAGTACAAAATGTCAAAAATTAGAAGGAAAGTCACAGTGGAAAATAC CAAGACCATATCTGATAGCACATCCCGAAGACCCAGTGTATTTGAGAGGCTTGGACCCAG CACTGGCAGTTCAGCAGAGACACAGTGCCGTAACTGGCTGAAGACTGGCAACTGCCTCTA TGGAAACACATGTAGATTCGTACATGGCCCTTCACCCCGTGGTAAAGGTTATAGCAGCAA TTATAGAAGGTCACCAGAAAGACCTACAGGGGATCTTAGAGAAAGAATGAAGAACAAGCG CCAAGATGTGGACACTGAGTCCCAGAAACGAAATACAGAGGAGTCATCCTCACCTGTTAG GAAAGAATCTTCAAGAGGGAGACATAGGGAAAAGGAAGACATAAAAATCACTAAGGAGAG AACTCCAGAAAGTGAAGAAGAAAATGTAGAATGGGAAACTAATAGAGATGATTCTGACAA TGGAGATATTAATTATGATTATGTTCATGAGTTGTCGTTGGAAATGAAGCGTCAGAAGAT ACAGAGGGAATTAATGAAGCTGGAACAAGAAAACATGGAGAAAAGAGAAGAAATTATTAT TAAAAAGGAGGTTTCACCAGAAGTGGTTAGATCAAAGTTATCCCCGTCACCTTCTCTCCG AAAGTCTAGCAAATCTCCAAAGCGTAAATCAAGCCCTAAGTCATCCTCTTCAGCGAGCAA GAAAGACAGGAAGACAACTGCAGTCTCTTCTCCCTTGCTGGACCAGCAGAGGAATTCAAA AAGCAACCAAAGTAAGAAGAAAGGACCTCGCACGCCTAGCCCACCCCCTCCTATACAGGA AGATATTGCTCTAGGGAAAAAATATAAGGAAAAATATAAACTAAAAGACAGGATAGAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGATACGCCTGGCGGCCTGATAGTGTTTTCCTTGTCTTTTCTTACTCTCCAGTCTCCCG TCCTTCCTTTTTTCTTCCGTCCCAGGCTCATTTGACCCTGGCGAGGCGGCAGGCGGGTTC TGCTTCCCAGCCGTCCTGGGAGTCCCTCGCTAGCCGAGGACGGGTTCCTGGGAGCCGCGC GCGCACTTCTTTCTCCTCGTCGTCGTCTTCCCAGGGCCAGGCGCGGGGACAGAGAGTCGC CTCCCCCGCTCCTCGGAGCGGTGGCGGCCGTGCTGCCTCCGGATTGCGCTTGCGAAAGGA CCTCGAGGAGGAGTAGTACAAAATGTCAAAAATTAGAAGGAAAGTCACAGTGGAAAATAC CAAGACCATATCTGATAGCACATCCCGAAGACCCAGTGTATTTGAGAGGCTTGGACCCAG CACTGGCAGTTCAGCAGAGACACAGTGCCGTAACTGGCTGAAGACTGGCAACTGCCTCTA TGGAAACACATGTAGATTCGTACATGGCCCTTCACCCCGTGGTAAAGGTTATAGCAGCAA TTATAGAAGGTCACCAGAAAGACCTACAGGGGATCTTAGAGAAAGAATGAAGAACAAGCG CCAAGATGTGGACACTGAGTCCCAGAAACGAAATACAGAGGAGTCATCCTCACCTGTTAG GAAAGAATCTTCAAGAGGGAGACATAGGGAAAAGGAAGACATAAAAATCACTAAGGAGAG AACTCCAGAAAGTGAAGAAGAAAATGTAGAATGGGAAACTAATAGAGATGATTCTGACAA TGGAGATATTAATTATGATTATGTTCATGAGTTGTCGTTGGAAATGAAGCGTCAGAAGAT ACAGAGGGAATTAATGAAGCTGGAACAAGAAAACATGGAGAAAAGAGAAGAAATTATTAT TAAAAAGGAGGTTTCACCAGAAGTGGTTAGATCAAAGTTATCCCCGTCACCTTCTCTCCG AAAGTCTAGCAAATCTCCAAAGCGTAAATCAAGCCCTAAGTCATCCTCTTCAGCGAGCAA GAAAGACAGGAAGACAACTGCAGTCTCTTCTCCCTTGCTGGACCAGCAGAGGAATTCAAA AAGCAACCAAAGTAAGAAGAAAGGACCTCGCACGCCTAGCCCACCCCCTCCTATACAGGA AGATATTGCTCTAGGGAAAAAATATAAGGAAAAATATAAACTAAAAGACAGGATAGAAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 438-551, + strand, RNAz p=0.811458 | |
| 438-551, + strand, RNAz p=0.845525 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 438-551, + strand, RNAz p=0.811458 | |
| 438-551, + strand, RNAz p=0.845525 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AY283618, + |
| Aligned organism(s): 65 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
| 15-313, gnl|bosTau2|chr12 (6639079-6638782) | |
| 15-313, gnl|canFam2|chr22 (8068874-8068625) | |
| 15-313, gnl|dasNov1|scaffold_3976 (38438-38663) | |
| 15-313, gnl|echTel1|scaffold_306790 (7283-7523) | |
| 15-313, gnl|hg17|chr13 (45524500-45524732) | |
| 15-313, gnl|Hg17|chr13 (45524839-45524540) | |
| 15-313, gnl|mm7|chr14 (69965270-69965071) | |
| 15-313, gnl|Mm7|chr14 (69964966-69965237) | |
| 15-313, gnl|monDom2|scaffold_64 (8781390-8781654) | |
| 15-313, gnl|oryCun1|scaffold_207856 (145007-144778) | |
| 15-313, gnl|panTro1|chr14 (45240468-45240703) | |
| 15-313, gnl|rheMac2|chr17 (24926103-24926338) | |
| 15-313, gnl|rn3|chr15 (56171244-56171046) | |
| 438-551, gnl|bosTau2|chr12 (6632674-6632561) | |
| 438-551, gnl|canFam2|chr22 (8075396-8075314) | |
| 438-551, gnl|danRer3|chr1 (32083322-32083268) | |
| 438-551, gnl|echTel1|scaffold_306790 (1549-1612) | |
| 438-551, gnl|galGal2|chr1 (160153439-160153521) | |
| 438-551, gnl|hg17|chr13 (45517083-45517165) | |
| 438-551, gnl|Hg17|chr13 (45517202-45517089) | |
| 438-551, gnl|loxAfr1|scaffold_63288 (3775-3856) | |
| 438-551, gnl|mm7|chr14 (69972869-69972787) | |
| 438-551, gnl|Mm7|chr14 (69972748-69972861) | |
| 438-551, gnl|monDom2|scaffold_64 (8779102-8779184) | |
| 438-551, gnl|oryCun1|scaffold_200644 (49439-49357) | |
| 438-551, gnl|panTro1|chr14 (45233352-45233434) | |
| 438-551, gnl|rheMac2|chr17 (24918488-24918570) | |
| 438-551, gnl|rn3|chr15 (56179479-56179397) | |
| 438-551, gnl|tetNig1|chr3 (6274138-6274062) | |
| 438-551, gnl|xenTro1|scaffold_809 (30198-30118) | |
| 654-770, gnl|bosTau2|chr12 (6609342-6609226) | |
| 654-770, gnl|canFam2|chr22 (8088627-8088493) | |
| 654-770, gnl|danRer3|chr1 (32083779-32083641) | |
| 654-770, gnl|fr1|chrUn (218494511-218494378) | |
| 654-770, gnl|galGal2|chr1 (160141205-160141336) | |
| 654-770, gnl|hg17|chr13 (45492581-45492712) | |
| 654-770, gnl|Hg17|chr13 (45492701-45492585) | |
| 654-770, gnl|loxAfr1|scaffold_10931 (41668-41534) | |
| 654-770, gnl|mm7|chr14 (69986474-69986340) | |
| 654-770, gnl|Mm7|chr14 (69986352-69986468) | |
| 654-770, gnl|monDom2|scaffold_64 (8746810-8746944) | |
| 654-770, gnl|oryCun1|scaffold_200644 (70838-70704) | |
| 654-770, gnl|panTro1|chr14 (45209142-45209273) | |
| 654-770, gnl|rheMac2|chr17 (24893460-24893591) | |
| 654-770, gnl|rn3|chr15 (56196270-56196136) | |
| 654-770, gnl|tetNig1|chr3 (6274739-6274627) | |
| 654-770, gnl|xenTro1|scaffold_809 (33369-33238) | |
| 909-1072, gnl|bosTau2|chr12 (6558425-6558262) | |
| 909-1072, gnl|canFam2|chr22 (8097157-8097015) | |
| 909-1072, gnl|danRer3|chr1 (32085066-32084932) | |
| 909-1072, gnl|echTel1|scaffold_238191 (3855-3716) | |
| 909-1072, gnl|fr1|chrUn (218495400-218495255) | |
| 909-1072, gnl|galGal2|chr1 (160136333-160136463) | |
| 909-1072, gnl|hg17|chr13 (45482467-45482606) | |
| 909-1072, gnl|Hg17|chr13 (45482643-45482483) | |
| 909-1072, gnl|loxAfr1|scaffold_10931 (49101-48962) | |
| 909-1072, gnl|mm7|chr14 (69990391-69990253) | |
| 909-1072, gnl|Mm7|chr14 (69990214-69990374) | |
| 909-1072, gnl|monDom2|scaffold_64 (8740895-8741035) | |
| 909-1072, gnl|oryCun1|scaffold_203576 (32991-32849) | |
| 909-1072, gnl|panTro1|chr14 (45199025-45199164) | |
| 909-1072, gnl|rheMac2|chr17 (24883403-24883542) | |
| 909-1072, gnl|rn3|chr15 (56201426-56201291) | |
| 909-1072, gnl|tetNig1|chr3 (6275814-6275674) | |
| 909-1072, gnl|xenTro1|scaffold_809 (35351-35216) |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 15-313, gnl|bosTau2|chr12 (6639079-6638782) | |
| 15-313, gnl|canFam2|chr22 (8068874-8068625) | |
| 15-313, gnl|dasNov1|scaffold_3976 (38438-38663) | |
| 15-313, gnl|echTel1|scaffold_306790 (7283-7523) | |
| 15-313, gnl|hg17|chr13 (45524500-45524732) | |
| 15-313, gnl|Hg17|chr13 (45524839-45524540) | |
| 15-313, gnl|mm7|chr14 (69965270-69965071) | |
| 15-313, gnl|Mm7|chr14 (69964966-69965237) | |
| 15-313, gnl|monDom2|scaffold_64 (8781390-8781654) | |
| 15-313, gnl|oryCun1|scaffold_207856 (145007-144778) | |
| 15-313, gnl|panTro1|chr14 (45240468-45240703) | |
| 15-313, gnl|rheMac2|chr17 (24926103-24926338) | |
| 15-313, gnl|rn3|chr15 (56171244-56171046) | |
| 438-551, gnl|bosTau2|chr12 (6632674-6632561) | |
| 438-551, gnl|canFam2|chr22 (8075396-8075314) | |
| 438-551, gnl|danRer3|chr1 (32083322-32083268) | |
| 438-551, gnl|echTel1|scaffold_306790 (1549-1612) | |
| 438-551, gnl|galGal2|chr1 (160153439-160153521) | |
| 438-551, gnl|hg17|chr13 (45517083-45517165) | |
| 438-551, gnl|Hg17|chr13 (45517202-45517089) | |
| 438-551, gnl|loxAfr1|scaffold_63288 (3775-3856) | |
| 438-551, gnl|mm7|chr14 (69972869-69972787) | |
| 438-551, gnl|Mm7|chr14 (69972748-69972861) | |
| 438-551, gnl|monDom2|scaffold_64 (8779102-8779184) | |
| 438-551, gnl|oryCun1|scaffold_200644 (49439-49357) | |
| 438-551, gnl|panTro1|chr14 (45233352-45233434) | |
| 438-551, gnl|rheMac2|chr17 (24918488-24918570) | |
| 438-551, gnl|rn3|chr15 (56179479-56179397) | |
| 438-551, gnl|tetNig1|chr3 (6274138-6274062) | |
| 438-551, gnl|xenTro1|scaffold_809 (30198-30118) | |
| 654-770, gnl|bosTau2|chr12 (6609342-6609226) | |
| 654-770, gnl|canFam2|chr22 (8088627-8088493) | |
| 654-770, gnl|danRer3|chr1 (32083779-32083641) | |
| 654-770, gnl|fr1|chrUn (218494511-218494378) | |
| 654-770, gnl|galGal2|chr1 (160141205-160141336) | |
| 654-770, gnl|hg17|chr13 (45492581-45492712) | |
| 654-770, gnl|Hg17|chr13 (45492701-45492585) | |
| 654-770, gnl|loxAfr1|scaffold_10931 (41668-41534) | |
| 654-770, gnl|mm7|chr14 (69986474-69986340) | |
| 654-770, gnl|Mm7|chr14 (69986352-69986468) | |
| 654-770, gnl|monDom2|scaffold_64 (8746810-8746944) | |
| 654-770, gnl|oryCun1|scaffold_200644 (70838-70704) | |
| 654-770, gnl|panTro1|chr14 (45209142-45209273) | |
| 654-770, gnl|rheMac2|chr17 (24893460-24893591) | |
| 654-770, gnl|rn3|chr15 (56196270-56196136) | |
| 654-770, gnl|tetNig1|chr3 (6274739-6274627) | |
| 654-770, gnl|xenTro1|scaffold_809 (33369-33238) | |
| 909-1072, gnl|bosTau2|chr12 (6558425-6558262) | |
| 909-1072, gnl|canFam2|chr22 (8097157-8097015) | |
| 909-1072, gnl|danRer3|chr1 (32085066-32084932) | |
| 909-1072, gnl|echTel1|scaffold_238191 (3855-3716) | |
| 909-1072, gnl|fr1|chrUn (218495400-218495255) | |
| 909-1072, gnl|galGal2|chr1 (160136333-160136463) | |
| 909-1072, gnl|hg17|chr13 (45482467-45482606) | |
| 909-1072, gnl|Hg17|chr13 (45482643-45482483) | |
| 909-1072, gnl|loxAfr1|scaffold_10931 (49101-48962) | |
| 909-1072, gnl|mm7|chr14 (69990391-69990253) | |
| 909-1072, gnl|Mm7|chr14 (69990214-69990374) | |
| 909-1072, gnl|monDom2|scaffold_64 (8740895-8741035) | |
| 909-1072, gnl|oryCun1|scaffold_203576 (32991-32849) | |
| 909-1072, gnl|panTro1|chr14 (45199025-45199164) | |
| 909-1072, gnl|rheMac2|chr17 (24883403-24883542) | |
| 909-1072, gnl|rn3|chr15 (56201426-56201291) | |
| 909-1072, gnl|tetNig1|chr3 (6275814-6275674) | |
| 909-1072, gnl|xenTro1|scaffold_809 (35351-35216) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.114797) |