Ss1.1-Pig4-TMW8040A07.3
|
GCCTGCTGGGCACGCCCTATGCCATCTCCCTCTCCAACTTCATCGGCCTCAAGCCTGTAC
CCTTCTTGGCTCTACCACCTGCCTCCCCAGGGCCGCCGCCGGGCTTGGCAGCCTACACTG
CCAAGATGGCAGCGGCTAATGGGAGCAAGAAAGCTGAGCGGCAGAAATTCTCCCCCTACT
GAGGCCAACTGAGGCAAAGGCATGGGGGCAGGCAGGACCGCCAGCAGGGGGCTGCCTCTG
CGCCCTACCTGCCCAAGGAGACTCCACCCCAGGGGTCCCAAATGCCGCTAATGCCCAGAC
GCATGGATACACCCCCCACCCTGCCCCGGTCTGTGGGAGTTCCTACTCTCAGAACGGGGA
TGGTTTCTGGCCCAGGGTTCTGGCAGCTGCGGCAGCCCCAGGGTAGGGGGCTCCACCCCC
TCTAGCTGTGCTTGGATGCAGGGAGCATCCTTAGTGCCCCCACTTTGGGGGGGGGGTCAC
TCATGTACTCCCCATCCCTTAGGGCTTCCCTGCCTGCTGCCCCCCTGTGGGGATCAGCGA
GGAGGCCAGGGGTGGCGGGGGCTGTGCTTCTCTCCCCAGCTCCCTGCAGATTCCTGCTGC
TTCCACTGATACCCTTTTGACTGGAATGGACTGGCTGGGCTTGGCAGAGGGTGACCCAAA
GAGGGCACTGCCGGGCAGCTGGGGGTGTGGCATGGGGGCAGGGGCTGAGTTTTCAGCAGC
AGACACTCTGTACAGTTTTTTCAATCCCTGTTTTTGAATAAATATTCTCAGAGACCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCCTGCTGGGCACGCCCTATGCCATCTCCCTCTCCAACTTCATCGGCCTCAAGCCTGTAC
CCTTCTTGGCTCTACCACCTGCCTCCCCAGGGCCGCCGCCGGGCTTGGCAGCCTACACTG
CCAAGATGGCAGCGGCTAATGGGAGCAAGAAAGCTGAGCGGCAGAAATTCTCCCCCTACT
GAGGCCAACTGAGGCAAAGGCATGGGGGCAGGCAGGACCGCCAGCAGGGGGCTGCCTCTG
CGCCCTACCTGCCCAAGGAGACTCCACCCCAGGGGTCCCAAATGCCGCTAATGCCCAGAC
GCATGGATACACCCCCCACCCTGCCCCGGTCTGTGGGAGTTCCTACTCTCAGAACGGGGA
TGGTTTCTGGCCCAGGGTTCTGGCAGCTGCGGCAGCCCCAGGGTAGGGGGCTCCACCCCC
TCTAGCTGTGCTTGGATGCAGGGAGCATCCTTAGTGCCCCCACTTTGGGGGGGGGGTCAC
TCATGTACTCCCCATCCCTTAGGGCTTCCCTGCCTGCTGCCCCCCTGTGGGGATCAGCGA
GGAGGCCAGGGGTGGCGGGGGCTGTGCTTCTCTCCCCAGCTCCCTGCAGATTCCTGCTGC
TTCCACTGATACCCTTTTGACTGGAATGGACTGGCTGGGCTTGGCAGAGGGTGACCCAAA
GAGGGCACTGCCGGGCAGCTGGGGGTGTGGCATGGGGGCAGGGGCTGAGTTTTCAGCAGC
AGACACTCTGTACAGTTTTTTCAATCCCTGTTTTTGAATAAATATTCTCAGAGACCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
61-190, - strand, RNAmicro p=0.999929 |
|
510-597, + strand, RNAmicro p=0.996063 |
|
65-158, + strand, RNAmicro p=0.995473 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
61-190, - strand, RNAmicro p=0.999929 |
|
510-597, + strand, RNAmicro p=0.996063 |
|
65-158, + strand, RNAmicro p=0.995473 |
|
86-569, DB813076 full-length enriched swine cDNA library, adult ovary Sus
(dbj|DB813076.1|), blast E-value=0, identity=96.9% |
|
1-458, 464170 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI682955.1|),
blast E-value=0, identity=100% |
|
1-451, BovGen_15596 normal cattle brain Bos taurus cDNA clone (gb|CO887271.1|),
blast E-value=0, identity=90.04% |
|
27-545, LIB30321_031_A11_SP6_1 LIB30321 Canis familiaris cDNA clone
(gb|DN271038.1|), blast E-value=0.00000000001, identity=90.14% |
|
1-511, 1265828 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN522464.1|),
blast E-value=0, identity=88.53% |
|
3-511, sh2P0006M15_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA,
(gb|DY492640.1|), blast E-value=0, identity=88.82% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
86-569, DB813076 full-length enriched swine cDNA library, adult ovary Sus
(dbj|DB813076.1|), blast E-value=0, identity=96.9% |
|
1-458, 464170 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI682955.1|),
blast E-value=0, identity=100% |
|
1-451, BovGen_15596 normal cattle brain Bos taurus cDNA clone (gb|CO887271.1|),
blast E-value=0, identity=90.04% |
|
27-545, LIB30321_031_A11_SP6_1 LIB30321 Canis familiaris cDNA clone
(gb|DN271038.1|), blast E-value=0.00000000001, identity=90.14% |
|
1-511, 1265828 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN522464.1|),
blast E-value=0, identity=88.53% |
|
3-511, sh2P0006M15_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA,
(gb|DY492640.1|), blast E-value=0, identity=88.82% |
|
5' of NM_020418, + |
|
5' of NM_020418, - |
Human gene identifier and UTR site,
human gene reading direction
|
5' of NM_020418, + |
|
5' of NM_020418, - |
|
1-777, gnl|bosTau2|chr22 (36467993-36467210) |
|
1-777, gnl|canFam2|chr20 (40754714-40754147) |
|
1-777, gnl|hg17|chr3 (51966506-51967080) |
|
1-777, gnl|Hg17|chr3 (51967298-51966514) |
|
1-777, gnl|loxAfr1|scaffold_35470 (2406-1829) |
|
1-777, gnl|mm7|chr9 (106193466-106192910) |
|
1-777, gnl|Mm7|chr9 (106192686-106193456) |
|
1-777, gnl|monDom2|scaffold_5 (71759214-71758530) |
|
1-777, gnl|oryCun1|scaffold_191230 (3883-4452) |
|
1-777, gnl|panTro1|chr2 (53576235-53576809) |
|
1-777, gnl|rheMac2|chr2 (84440252-84439678) |
|
1-777, gnl|rn3|chr8 (111627236-111626679) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-777, gnl|bosTau2|chr22 (36467993-36467210) |
|
1-777, gnl|canFam2|chr20 (40754714-40754147) |
|
1-777, gnl|hg17|chr3 (51966506-51967080) |
|
1-777, gnl|Hg17|chr3 (51967298-51966514) |
|
1-777, gnl|loxAfr1|scaffold_35470 (2406-1829) |
|
1-777, gnl|mm7|chr9 (106193466-106192910) |
|
1-777, gnl|Mm7|chr9 (106192686-106193456) |
|
1-777, gnl|monDom2|scaffold_5 (71759214-71758530) |
|
1-777, gnl|oryCun1|scaffold_191230 (3883-4452) |
|
1-777, gnl|panTro1|chr2 (53576235-53576809) |
|
1-777, gnl|rheMac2|chr2 (84440252-84439678) |
|
1-777, gnl|rn3|chr8 (111627236-111626679) |
|
fce (0.543183) |
|
fhi (0.339155) |
|
cbe (0.239234) |
|
ecc (0.23007) |
|
eje (0.197668) |
|
eye (0.170503) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
eep (0.122564) |
|
eru (0.120048) |
|
fce (0.543183) |
|
fhi (0.339155) |
|
cbe (0.239234) |
|
ecc (0.23007) |
|
eje (0.197668) |
|
eye (0.170503) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
eep (0.122564) |
|
eru (0.120048) |
