Ss1.1-Pig4-TMW8040A08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCAAAAGACCCGGTTCGGCGCTGCCGCCGACGCTCGCTCCTGCTGTCGGTGTCGCGCCGC GGCCGCGCGCGACCGGCATGAGCGCGCGGCCGGGCCAGTGACCGCGTTGGAGATGGACTG CGGCTCCGTCGCGGGGGAGAGGCCGAAGCGCCTGCCCGGCCGCCGGCGCCTTCTGCTCTT CCTGGCCGCGGGCCGCGGCGGAAGCCCGGGCGGCCGTGGCGTTCCCGCGCGCCGCCTCGT GCCCACGCTCCCCGGCGGTCTGGGGGCGCTGCGGCCCCGCGGCCCGGCGGCCCGTGCCAG CGCGTCACGTGCCTCCCCGCTGTTCCTCGTCCTGCTTGTGCCCTTCCCGCGCCTGGCCGC CGCCGGCCCTCGCCGGCCGCTGGCGAACTGGGAGCGGTGGCGCGCCGGGCCCTCGTCTCC CCCGGCCGGGCGCGGCGGCGCGTGGAGGTGGCAGCCGGGCCTGGCCCCCCGCGTCGCCTG CGCGGCGGGCGCGCTCCACCTATGCCTCCGGCGGGTGGCCGCCCTCGCTTCCTCGAGGAG AGAGCTGAGCCTCTCTGCGGGCAGCCTGCAGCTGGAGGGCAAAAGGAGAGAGTTCACCTC TTCTGGGAGTAGGAAGCTCTACTTTGACACCCACGCCTTAGTGTGTTTACTCGAAGAAAA TGGGTTCACTACTCGACAAGCGGAAATCATTGTGTCTGCCTTGGTCAAGATCACAGAGAC CAACATGGATGTCGTCTACAAAGATATGGTCACCAAGATGCAGCAGGAGATCACGCTTCA GCAGTTGATGGCTCAGATTGCTAATGTGAAAAAAGATATGATTATTTTGGAGAAGAGTGA ATTTTCAGCCCTTCGATCAGAAAATGAGAAGATAAAACTTGAACTACATCGGTTAAAACA ACAAGTAATGGATGAAGTGATCAAAGTCCGAACAGAAACCAAATTAGACTTCAATCTAGA AAAGAGCAGAGTCAAAGAATTGTATTCATTAAACGAAAGGAAGCTGCTGGAAGTAAAAAC AGAAATGGTGTCATTGCACGCCCAGCAAGATCGGGCCATCACACAGACGGACAGGAAGAT AGACACCGAGGTCGCTGGCCTCAAAACCATGCTCGAGTCGCACAAGCTCGACAATATAAA ATATTTAGCAGGATCCGTGTTTACGTGCCTAACGGTAGCTCTGGGATTTTACCGCCTGTG GATATAATAAAGTGTCTATTTAAAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCAAAAGACCCGGTTCGGCGCTGCCGCCGACGCTCGCTCCTGCTGTCGGTGTCGCGCCGC GGCCGCGCGCGACCGGCATGAGCGCGCGGCCGGGCCAGTGACCGCGTTGGAGATGGACTG CGGCTCCGTCGCGGGGGAGAGGCCGAAGCGCCTGCCCGGCCGCCGGCGCCTTCTGCTCTT CCTGGCCGCGGGCCGCGGCGGAAGCCCGGGCGGCCGTGGCGTTCCCGCGCGCCGCCTCGT GCCCACGCTCCCCGGCGGTCTGGGGGCGCTGCGGCCCCGCGGCCCGGCGGCCCGTGCCAG CGCGTCACGTGCCTCCCCGCTGTTCCTCGTCCTGCTTGTGCCCTTCCCGCGCCTGGCCGC CGCCGGCCCTCGCCGGCCGCTGGCGAACTGGGAGCGGTGGCGCGCCGGGCCCTCGTCTCC CCCGGCCGGGCGCGGCGGCGCGTGGAGGTGGCAGCCGGGCCTGGCCCCCCGCGTCGCCTG CGCGGCGGGCGCGCTCCACCTATGCCTCCGGCGGGTGGCCGCCCTCGCTTCCTCGAGGAG AGAGCTGAGCCTCTCTGCGGGCAGCCTGCAGCTGGAGGGCAAAAGGAGAGAGTTCACCTC TTCTGGGAGTAGGAAGCTCTACTTTGACACCCACGCCTTAGTGTGTTTACTCGAAGAAAA TGGGTTCACTACTCGACAAGCGGAAATCATTGTGTCTGCCTTGGTCAAGATCACAGAGAC CAACATGGATGTCGTCTACAAAGATATGGTCACCAAGATGCAGCAGGAGATCACGCTTCA GCAGTTGATGGCTCAGATTGCTAATGTGAAAAAAGATATGATTATTTTGGAGAAGAGTGA ATTTTCAGCCCTTCGATCAGAAAATGAGAAGATAAAACTTGAACTACATCGGTTAAAACA ACAAGTAATGGATGAAGTGATCAAAGTCCGAACAGAAACCAAATTAGACTTCAATCTAGA AAAGAGCAGAGTCAAAGAATTGTATTCATTAAACGAAAGGAAGCTGCTGGAAGTAAAAAC AGAAATGGTGTCATTGCACGCCCAGCAAGATCGGGCCATCACACAGACGGACAGGAAGAT AGACACCGAGGTCGCTGGCCTCAAAACCATGCTCGAGTCGCACAAGCTCGACAATATAAA ATATTTAGCAGGATCCGTGTTTACGTGCCTAACGGTAGCTCTGGGATTTTACCGCCTGTG GATATAATAAAGTGTCTATTTAAAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 764-868, - strand, RNAz p=0.594298 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 764-868, - strand, RNAz p=0.594298 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 541-663, gnl|bosTau2|chr14 (47417401-47417523) | |
| 541-663, gnl|Hg17|chr6 (13915257-13915135) | |
| 541-663, gnl|Mm7|chr13 (42995283-42995161) | |
| 670-915, gnl|bosTau2|chr14 (31713713-31713489) | |
| 670-915, gnl|Hg17|chr17 (1978003-1977756) | |
| 764-868, gnl|bosTau2|chr14 (47421279-47421383) | |
| 764-868, gnl|canFam2|chr35 (16225267-16225403) | |
| 764-868, gnl|canFam2|chr7 (76192321-76192431) | |
| 764-868, gnl|danRer3|chr7 (29663095-29663219) | |
| 764-868, gnl|dasNov1|scaffold_228207 (3986-4096) | |
| 764-868, gnl|dasNov1|scaffold_53897 (9763-9632) | |
| 764-868, gnl|echTel1|scaffold_199469 (4528-4417) | |
| 764-868, gnl|echTel1|scaffold_199469 (4522-4388) | |
| 764-868, gnl|galGal2|chr2 (60355123-60355259) | |
| 764-868, gnl|hg17|chr17 (1977796-1977906) | |
| 764-868, gnl|hg17|chr6 (13909494-13909628) | |
| 764-868, gnl|Hg17|chr6 (13909603-13909499) | |
| 764-868, gnl|loxAfr1|scaffold_12208 (37619-37757) | |
| 764-868, gnl|loxAfr1|scaffold_23217 (12429-12540) | |
| 764-868, gnl|mm7|chr13 (42991257-42991364) | |
| 764-868, gnl|mm7|chr13 (42991258-42991394) | |
| 764-868, gnl|Mm7|chr13 (42991367-42991263) | |
| 764-868, gnl|monDom2|scaffold_3 (101622890-101623026) | |
| 764-868, gnl|oryCun1|scaffold_174663 (106091-106224) | |
| 764-868, gnl|oryCun1|scaffold_6304 (6339-6441) | |
| 764-868, gnl|panTro1|chr19 (2154827-2154937) | |
| 764-868, gnl|panTro1|chr5 (14202137-14202271) | |
| 764-868, gnl|rheMac2|chr16 (1923319-1923427) | |
| 764-868, gnl|rheMac2|chr4 (13770745-13770879) | |
| 764-868, gnl|rn3|chr17 (26977191-26977087) | |
| 764-868, gnl|rn3|chr17 (26977193-26977057) | |
| 764-868, gnl|tetNig1|chrUn_random (134252330-134252230) | |
| 764-868, gnl|tetNig1|chrUn_random (134252332-134252227) | |
| 1036-1152, gnl|bosTau2|chr14 (47428008-47428124) | |
| 1036-1152, gnl|Hg17|chr6 (13900204-13900088) | |
| 1036-1152, gnl|Mm7|chr13 (42984837-42984721) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 541-663, gnl|bosTau2|chr14 (47417401-47417523) | |
| 541-663, gnl|Hg17|chr6 (13915257-13915135) | |
| 541-663, gnl|Mm7|chr13 (42995283-42995161) | |
| 670-915, gnl|bosTau2|chr14 (31713713-31713489) | |
| 670-915, gnl|Hg17|chr17 (1978003-1977756) | |
| 764-868, gnl|bosTau2|chr14 (47421279-47421383) | |
| 764-868, gnl|canFam2|chr35 (16225267-16225403) | |
| 764-868, gnl|canFam2|chr7 (76192321-76192431) | |
| 764-868, gnl|danRer3|chr7 (29663095-29663219) | |
| 764-868, gnl|dasNov1|scaffold_228207 (3986-4096) | |
| 764-868, gnl|dasNov1|scaffold_53897 (9763-9632) | |
| 764-868, gnl|echTel1|scaffold_199469 (4528-4417) | |
| 764-868, gnl|echTel1|scaffold_199469 (4522-4388) | |
| 764-868, gnl|galGal2|chr2 (60355123-60355259) | |
| 764-868, gnl|hg17|chr17 (1977796-1977906) | |
| 764-868, gnl|hg17|chr6 (13909494-13909628) | |
| 764-868, gnl|Hg17|chr6 (13909603-13909499) | |
| 764-868, gnl|loxAfr1|scaffold_12208 (37619-37757) | |
| 764-868, gnl|loxAfr1|scaffold_23217 (12429-12540) | |
| 764-868, gnl|mm7|chr13 (42991257-42991364) | |
| 764-868, gnl|mm7|chr13 (42991258-42991394) | |
| 764-868, gnl|Mm7|chr13 (42991367-42991263) | |
| 764-868, gnl|monDom2|scaffold_3 (101622890-101623026) | |
| 764-868, gnl|oryCun1|scaffold_174663 (106091-106224) | |
| 764-868, gnl|oryCun1|scaffold_6304 (6339-6441) | |
| 764-868, gnl|panTro1|chr19 (2154827-2154937) | |
| 764-868, gnl|panTro1|chr5 (14202137-14202271) | |
| 764-868, gnl|rheMac2|chr16 (1923319-1923427) | |
| 764-868, gnl|rheMac2|chr4 (13770745-13770879) | |
| 764-868, gnl|rn3|chr17 (26977191-26977087) | |
| 764-868, gnl|rn3|chr17 (26977193-26977057) | |
| 764-868, gnl|tetNig1|chrUn_random (134252330-134252230) | |
| 764-868, gnl|tetNig1|chrUn_random (134252332-134252227) | |
| 1036-1152, gnl|bosTau2|chr14 (47428008-47428124) | |
| 1036-1152, gnl|Hg17|chr6 (13900204-13900088) | |
| 1036-1152, gnl|Mm7|chr13 (42984837-42984721) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| mgm (0.180343) | |
| ton (0.1755) | |
| cje (0.165235) | |
| hlv (0.139256) | |
| che (0.136314) | |
| nmm (0.132802) | |
| bla (0.124347) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgm (0.180343) | |
| ton (0.1755) | |
| cje (0.165235) | |
| hlv (0.139256) | |
| che (0.136314) | |
| nmm (0.132802) | |
| bla (0.124347) |