Ss1.1-Pig4-TMW8040A10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACTAGACTCAGAGACGTCTGCTTTATTTGTCTGTGGACAGGCACACACGCACACGCTAT TTCTCAAGCACAGGGACATCGGAGGTGCCCAGTAGGACATGCTGCAGTGAGGGGTAGGAG GGTCTGTGGACTGTGGTCCCACACTGGCCTCTCTTCAGGGCTCCAAGTCACCACCAGGCC GGGAGGGAGGCTGCTCATCAACCCTTGTGGGCAGCGCTCACACAGTGTTGGTAAGCCTTG ACCAGGTCCGAGCACAGCAGCACCTCCTGCAGGTGGTCGCGGTAGCAGCGGAGGATCTGG TCCTGCAGCCCCGAGCACACGGGCTCCAGCCTGCGGGGCTTGATCGTGCCCTCCACTTTT GAGGCTGCCTCGTGGAACTGCTGTGAAGACAGTCTGTATGTCTCCATGTTCTTCCTCTCC AGGCCCCCCAGCTGCTCCTTGTAGAAAGCATCACGGCGTCTCAGCTCTGCCTCTCGGCTT TCCAGCTCCCTGGCCATCCGGGCTGACCTCTGCTTCTCCTGGTCCACACTGATCTCCTCC CGCCGCAGGGCCGCCTCTCCCTCCCTCACGGCCACATGGGGCAGCTGGCCCTGACCCATG GCCAGCTCCTCTTCACACCTCCTAAGGGGACCCACTTCCGCCCCTGAGGGCTGCCAGCCA CGGCCATACTCCGGTCTGGACACTTTACAGTCTGTGTCCAGGCCTCTGGAGGAGCCAAGG GCAGCAGGTGGAGGAGCCGTTGGCCCTGTTCTGGCAGGCTGGCTGGAGTTCTTCATGCGG GTCACCACACTCTCAGACAGCCGGATGCCCTGCAGCACCCGGACCCGCTCCTCCTCGTCC ATCCCGAAAGACGCCCTGCGGCCCTCGCTGCTTTCCGCGCTGCCCATGGCGGGAGGCGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACTAGACTCAGAGACGTCTGCTTTATTTGTCTGTGGACAGGCACACACGCACACGCTAT TTCTCAAGCACAGGGACATCGGAGGTGCCCAGTAGGACATGCTGCAGTGAGGGGTAGGAG GGTCTGTGGACTGTGGTCCCACACTGGCCTCTCTTCAGGGCTCCAAGTCACCACCAGGCC GGGAGGGAGGCTGCTCATCAACCCTTGTGGGCAGCGCTCACACAGTGTTGGTAAGCCTTG ACCAGGTCCGAGCACAGCAGCACCTCCTGCAGGTGGTCGCGGTAGCAGCGGAGGATCTGG TCCTGCAGCCCCGAGCACACGGGCTCCAGCCTGCGGGGCTTGATCGTGCCCTCCACTTTT GAGGCTGCCTCGTGGAACTGCTGTGAAGACAGTCTGTATGTCTCCATGTTCTTCCTCTCC AGGCCCCCCAGCTGCTCCTTGTAGAAAGCATCACGGCGTCTCAGCTCTGCCTCTCGGCTT TCCAGCTCCCTGGCCATCCGGGCTGACCTCTGCTTCTCCTGGTCCACACTGATCTCCTCC CGCCGCAGGGCCGCCTCTCCCTCCCTCACGGCCACATGGGGCAGCTGGCCCTGACCCATG GCCAGCTCCTCTTCACACCTCCTAAGGGGACCCACTTCCGCCCCTGAGGGCTGCCAGCCA CGGCCATACTCCGGTCTGGACACTTTACAGTCTGTGTCCAGGCCTCTGGAGGAGCCAAGG GCAGCAGGTGGAGGAGCCGTTGGCCCTGTTCTGGCAGGCTGGCTGGAGTTCTTCATGCGG GTCACCACACTCTCAGACAGCCGGATGCCCTGCAGCACCCGGACCCGCTCCTCCTCGTCC ATCCCGAAAGACGCCCTGCGGCCCTCGCTGCTTTCCGCGCTGCCCATGGCGGGAGGCGGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 181-342, gnl|bosTau2|chr22 (46483300-46483139) | |
| 181-342, gnl|canFam2|chr20 (4118223-4118397) | |
| 181-342, gnl|danRer3|chr23 (51211930-51212090) | |
| 181-342, gnl|galGal2|chr12 (9858853-9859015) | |
| 181-342, gnl|hg17|chr3 (128158937-128159111) | |
| 181-342, gnl|Hg17|chr3 (128159111-128158954) | |
| 181-342, gnl|loxAfr1|scaffold_150364 (1548-1722) | |
| 181-342, gnl|mm7|chr6 (89459855-89459682) | |
| 181-342, gnl|Mm7|chr6 (89459681-89459835) | |
| 181-342, gnl|monDom2|scaffold_5 (44966677-44966840) | |
| 181-342, gnl|oryCun1|scaffold_117380 (3325-3492) | |
| 181-342, gnl|panTro1|chr2 (130032979-130033153) | |
| 181-342, gnl|rheMac2|chr2 (46742598-46742772) | |
| 181-342, gnl|rn3|chr4 (123704235-123704070) | |
| 798-900, gnl|bosTau2|chr7 (16960344-16960242) | |
| 798-900, gnl|canFam2|chr20 (3871800-3872184) | |
| 798-900, gnl|dasNov1|scaffold_106213 (713-1072) | |
| 798-900, gnl|echTel1|scaffold_318942 (39705-40034) | |
| 798-900, gnl|hg17|chr3 (127905664-127906010) | |
| 798-900, gnl|Hg17|chr3 (127905943-127905809) | |
| 798-900, gnl|loxAfr1|scaffold_6836 (64597-64235) | |
| 798-900, gnl|mm7|chr6 (89670804-89670503) | |
| 798-900, gnl|Mm7|chr6 (89670549-89670665) | |
| 798-900, gnl|panTro1|chr2 (129746572-129746919) | |
| 798-900, gnl|rheMac2|chr2 (46505963-46506308) | |
| 798-900, gnl|rn3|chr4 (123926254-123925953) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 181-342, gnl|bosTau2|chr22 (46483300-46483139) | |
| 181-342, gnl|canFam2|chr20 (4118223-4118397) | |
| 181-342, gnl|danRer3|chr23 (51211930-51212090) | |
| 181-342, gnl|galGal2|chr12 (9858853-9859015) | |
| 181-342, gnl|hg17|chr3 (128158937-128159111) | |
| 181-342, gnl|Hg17|chr3 (128159111-128158954) | |
| 181-342, gnl|loxAfr1|scaffold_150364 (1548-1722) | |
| 181-342, gnl|mm7|chr6 (89459855-89459682) | |
| 181-342, gnl|Mm7|chr6 (89459681-89459835) | |
| 181-342, gnl|monDom2|scaffold_5 (44966677-44966840) | |
| 181-342, gnl|oryCun1|scaffold_117380 (3325-3492) | |
| 181-342, gnl|panTro1|chr2 (130032979-130033153) | |
| 181-342, gnl|rheMac2|chr2 (46742598-46742772) | |
| 181-342, gnl|rn3|chr4 (123704235-123704070) | |
| 798-900, gnl|bosTau2|chr7 (16960344-16960242) | |
| 798-900, gnl|canFam2|chr20 (3871800-3872184) | |
| 798-900, gnl|dasNov1|scaffold_106213 (713-1072) | |
| 798-900, gnl|echTel1|scaffold_318942 (39705-40034) | |
| 798-900, gnl|hg17|chr3 (127905664-127906010) | |
| 798-900, gnl|Hg17|chr3 (127905943-127905809) | |
| 798-900, gnl|loxAfr1|scaffold_6836 (64597-64235) | |
| 798-900, gnl|mm7|chr6 (89670804-89670503) | |
| 798-900, gnl|Mm7|chr6 (89670549-89670665) | |
| 798-900, gnl|panTro1|chr2 (129746572-129746919) | |
| 798-900, gnl|rheMac2|chr2 (46505963-46506308) | |
| 798-900, gnl|rn3|chr4 (123926254-123925953) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| fhi (0.339155) | |
| ebs (0.236602) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| col (0.195008) | |
| fty (0.17584) | |
| nje (0.16592) | |
| nmm (0.132802) | |
| nbm (0.0993246) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.339155) | |
| ebs (0.236602) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| col (0.195008) | |
| fty (0.17584) | |
| nje (0.16592) | |
| nmm (0.132802) | |
| nbm (0.0993246) |