Non-Coding RNA Search

Ss1.1-Pig4-TMW8040A16.5

Sequence:


               
               CTCAATGAGGGCAAAGAAGGCCCCCCGCTGAGCAACACCACGTTTCCCCACGTGCTGCCG
CTCATCACTCTGCTGGAGTGCGACACGGCCCCAGCCGAGGGCCCCGAGCCCTGGGGCAGC
ACGGAGCACGGCGTGGAGGTGGTGCTGGCCCACCTGGAGGCCGCCCGCACAGTGGCACAC
CACGGCGGCCTGTATCACACCAACGCCGAGGTCAAGCTGCAGGGGTTCCAGGCCCGGCCG
GAGCTCCTCGAGGTCTTCAGCACGGAGTTCCAGATGCGCCTCCTCTGGGGCAGCCAGGGT
GCCAGCAGCAGCCAGGCCCGGCGCTACGAGAAGTTTGACAAGGTCCTCACTGCCCTGTCA
CACAAGCTGGAACCTGCCGTCCGCTCCAGCGAGCTGTGACACCCCCGCCATGGACCCTTC
CCCTCTGCAGCTGCGGGCAGCAATGGGGCCAGAAGGGCACAGACCTCTCCCCAGAGCACC
CCAGGGACACTGTGATCAGCCTGAGAATGTTCTGGGTTCAACCCCAGGATCTCCCTCGTA
CCGCCAGGGTCTTACGTGGACTCTGGGCTCCATCCCACCTGCTACTCATTCACCAAGCTT
CCCTTCAGGAAGAACTGGAATGCCCGGTTCTTCCTCCAGCTTCGGCTTCTCCACTTCCCG
CTGAGGTGCCCTGTGTTTGAGCGGCGGGAGGCTTCTCACGCCTCCTCCTGCTTCTCCAGG
CATCTGTCCCCCACGGACACCCAGGCCTCCCTCTGGCTGTAAATACATCTGTCTGTTATG
TAAATAGATGTACAGAAACCACGTTCTTTCTTTCATATAATAAACTTTTATGACCCCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAATGAGGGCAAAGAAGGCCCCCCGCTGAGCAACACCACGTTTCCCCACGTGCTGCCG
CTCATCACTCTGCTGGAGTGCGACACGGCCCCAGCCGAGGGCCCCGAGCCCTGGGGCAGC
ACGGAGCACGGCGTGGAGGTGGTGCTGGCCCACCTGGAGGCCGCCCGCACAGTGGCACAC
CACGGCGGCCTGTATCACACCAACGCCGAGGTCAAGCTGCAGGGGTTCCAGGCCCGGCCG
GAGCTCCTCGAGGTCTTCAGCACGGAGTTCCAGATGCGCCTCCTCTGGGGCAGCCAGGGT
GCCAGCAGCAGCCAGGCCCGGCGCTACGAGAAGTTTGACAAGGTCCTCACTGCCCTGTCA
CACAAGCTGGAACCTGCCGTCCGCTCCAGCGAGCTGTGACACCCCCGCCATGGACCCTTC
CCCTCTGCAGCTGCGGGCAGCAATGGGGCCAGAAGGGCACAGACCTCTCCCCAGAGCACC
CCAGGGACACTGTGATCAGCCTGAGAATGTTCTGGGTTCAACCCCAGGATCTCCCTCGTA
CCGCCAGGGTCTTACGTGGACTCTGGGCTCCATCCCACCTGCTACTCATTCACCAAGCTT
CCCTTCAGGAAGAACTGGAATGCCCGGTTCTTCCTCCAGCTTCGGCTTCTCCACTTCCCG
CTGAGGTGCCCTGTGTTTGAGCGGCGGGAGGCTTCTCACGCCTCCTCCTGCTTCTCCAGG
CATCTGTCCCCCACGGACACCCAGGCCTCCCTCTGGCTGTAAATACATCTGTCTGTTATG
TAAATAGATGTACAGAAACCACGTTCTTTCTTTCATATAATAAACTTTTATGACCCCTAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               106-224, + strand, RNAz p=0.96879
               

               
               110-224, - strand, RNAz p=0.862751

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               106-224, + strand, RNAz p=0.96879
               

               
               110-224, - strand, RNAz p=0.862751

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               120-216, + strand, RNAmicro p=0.995787

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               120-216, + strand, RNAmicro p=0.995787

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               15-224, gnl|bosTau2|chr11 (79618948-79618739)
               

               
               15-224, gnl|canFam2|chr9 (58999591-58999388)
               

               
               15-224, gnl|danRer3|chr10 (3132115-3132303)
               

               
               15-224, gnl|dasNov1|scaffold_91519 (4305-4101)
               

               
               15-224, gnl|echTel1|scaffold_324516 (8152-7949)
               

               
               15-224, gnl|fr1|chrUn (300311945-300312139)
               

               
               15-224, gnl|galGal2|chr17 (5817415-5817618)
               

               
               15-224, gnl|hg17|chr9 (127581493-127581696)
               

               
               15-224, gnl|Hg17|chr9 (127581723-127581514)
               

               
               15-224, gnl|loxAfr1|scaffold_20439 (20115-20318)
               

               
               15-224, gnl|mm7|chr2 (32760529-32760327)
               

               
               15-224, gnl|Mm7|chr2 (32760298-32760507)
               

               
               15-224, gnl|monDom2|scaffold_51 (2135162-2135356)
               

               
               15-224, gnl|oryCun1|scaffold_207311 (135849-135674)
               

               
               15-224, gnl|panTro1|chr11 (112398139-112398342)
               

               
               15-224, gnl|rheMac2|chr15 (98843118-98842915)
               

               
               15-224, gnl|rn3|chr3 (11626476-11626274)
               

               
               15-224, gnl|tetNig1|chr4 (1028030-1028224)
               

               
               15-224, gnl|xenTro1|scaffold_82 (2175550-2175347)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-224, gnl|bosTau2|chr11 (79618948-79618739)
               

               
               15-224, gnl|canFam2|chr9 (58999591-58999388)
               

               
               15-224, gnl|danRer3|chr10 (3132115-3132303)
               

               
               15-224, gnl|dasNov1|scaffold_91519 (4305-4101)
               

               
               15-224, gnl|echTel1|scaffold_324516 (8152-7949)
               

               
               15-224, gnl|fr1|chrUn (300311945-300312139)
               

               
               15-224, gnl|galGal2|chr17 (5817415-5817618)
               

               
               15-224, gnl|hg17|chr9 (127581493-127581696)
               

               
               15-224, gnl|Hg17|chr9 (127581723-127581514)
               

               
               15-224, gnl|loxAfr1|scaffold_20439 (20115-20318)
               

               
               15-224, gnl|mm7|chr2 (32760529-32760327)
               

               
               15-224, gnl|Mm7|chr2 (32760298-32760507)
               

               
               15-224, gnl|monDom2|scaffold_51 (2135162-2135356)
               

               
               15-224, gnl|oryCun1|scaffold_207311 (135849-135674)
               

               
               15-224, gnl|panTro1|chr11 (112398139-112398342)
               

               
               15-224, gnl|rheMac2|chr15 (98843118-98842915)
               

               
               15-224, gnl|rn3|chr3 (11626476-11626274)
               

               
               15-224, gnl|tetNig1|chr4 (1028030-1028224)
               

               
               15-224, gnl|xenTro1|scaffold_82 (2175550-2175347)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)

	106-224, + strand, RNAz p=0.96879
	110-224, - strand, RNAz p=0.862751

	15-224, gnl\|bosTau2\|chr11 (79618948-79618739)
	15-224, gnl\|canFam2\|chr9 (58999591-58999388)
	15-224, gnl\|danRer3\|chr10 (3132115-3132303)
	15-224, gnl\|dasNov1\|scaffold_91519 (4305-4101)
	15-224, gnl\|echTel1\|scaffold_324516 (8152-7949)
	15-224, gnl\|fr1\|chrUn (300311945-300312139)
	15-224, gnl\|galGal2\|chr17 (5817415-5817618)
	15-224, gnl\|hg17\|chr9 (127581493-127581696)
	15-224, gnl\|Hg17\|chr9 (127581723-127581514)
	15-224, gnl\|loxAfr1\|scaffold_20439 (20115-20318)
	15-224, gnl\|mm7\|chr2 (32760529-32760327)
	15-224, gnl\|Mm7\|chr2 (32760298-32760507)
	15-224, gnl\|monDom2\|scaffold_51 (2135162-2135356)
	15-224, gnl\|oryCun1\|scaffold_207311 (135849-135674)
	15-224, gnl\|panTro1\|chr11 (112398139-112398342)
	15-224, gnl\|rheMac2\|chr15 (98843118-98842915)
	15-224, gnl\|rn3\|chr3 (11626476-11626274)
	15-224, gnl\|tetNig1\|chr4 (1028030-1028224)
	15-224, gnl\|xenTro1\|scaffold_82 (2175550-2175347)