Non-Coding RNA Search

Ss1.1-Pig4-TMW8040A17.3

Sequence:


               
               TAAATCTGTCTTCCCAAAGCTGGGCTAGACGTAAACCATGTTTGCCTCTGTTGGAATGAC
GGGTCGGTCTTTCAGAGGAGAGAGGCCAAGGGCAGAATGTTAGCAGGCCGGATTCCCCAG
GCAGGGGGGGTAGAGGGCATCCCCGGAGTGCGCCCAGAATGGAGCTCGCCCCCCCCATCT
CTGCTCTCGTTCCCCCTCCGTCAGCCCCCACCCCACCTGAAGCAGCTACGCCCCGGAGGT
GGGGTTTCTGTTTTGTTTGTTTTTATTTTTGTTTTGTGTAGTAGCATCAGACTCTGAAAG
GGCATTGATAGCAATTTTGTTTTGAAAGCACCTTTCTGGTGGCAAGCCAGAGCTCCATGG
TTTCTTGGCCCTGGAAAGGCAGGAGGAGGGCAGAAATGGCTTAACTATTTGCATGTGGTT
TTGTTTGTTTTTGTTTCAAAGACCAAAACTTTCTGTGGCTTCAGGAATCAGCTGGAGCCT
TTGGCCTGGCCCTGCTAATTGTCCAGGTGGGGCCCAGGAAAAGCATTCGGCCAATGAATT
GAGGACATAATACATGTGAATTTGGAAGGAGAGACCTTGACATTTTTGCGTCCTTGGAAA
TCCAGTGACCTTCCTATGCCTAGAGTCCCTTCCTGTCTCAGAGGCCAGGCTCTGTCACTG
AGGTCCTGACTGCCTCCCCCACCCCACCCCCCGCCACGCAGGACAAAGTCTGCTGAGAGC
TGGAGGGAGGGGGTGGGGTGAGGAATGGGGCAGAAGCACTTGATGTAGTTGTGTGGAATA
AACAGTATTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAATCTGTCTTCCCAAAGCTGGGCTAGACGTAAACCATGTTTGCCTCTGTTGGAATGAC
GGGTCGGTCTTTCAGAGGAGAGAGGCCAAGGGCAGAATGTTAGCAGGCCGGATTCCCCAG
GCAGGGGGGGTAGAGGGCATCCCCGGAGTGCGCCCAGAATGGAGCTCGCCCCCCCCATCT
CTGCTCTCGTTCCCCCTCCGTCAGCCCCCACCCCACCTGAAGCAGCTACGCCCCGGAGGT
GGGGTTTCTGTTTTGTTTGTTTTTATTTTTGTTTTGTGTAGTAGCATCAGACTCTGAAAG
GGCATTGATAGCAATTTTGTTTTGAAAGCACCTTTCTGGTGGCAAGCCAGAGCTCCATGG
TTTCTTGGCCCTGGAAAGGCAGGAGGAGGGCAGAAATGGCTTAACTATTTGCATGTGGTT
TTGTTTGTTTTTGTTTCAAAGACCAAAACTTTCTGTGGCTTCAGGAATCAGCTGGAGCCT
TTGGCCTGGCCCTGCTAATTGTCCAGGTGGGGCCCAGGAAAAGCATTCGGCCAATGAATT
GAGGACATAATACATGTGAATTTGGAAGGAGAGACCTTGACATTTTTGCGTCCTTGGAAA
TCCAGTGACCTTCCTATGCCTAGAGTCCCTTCCTGTCTCAGAGGCCAGGCTCTGTCACTG
AGGTCCTGACTGCCTCCCCCACCCCACCCCCCGCCACGCAGGACAAAGTCTGCTGAGAGC
TGGAGGGAGGGGGTGGGGTGAGGAATGGGGCAGAAGCACTTGATGTAGTTGTGTGGAATA
AACAGTATTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               151-306, - strand, RNAz p=0.947889

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               151-306, - strand, RNAz p=0.947889

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-792, gnl|bosTau2|chr5 (20760167-20760938)
               

               
               1-792, gnl|Hg17|chr12 (49867755-49866995)
               

               
               1-792, gnl|Mm7|chr15 (100561238-100560572)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-792, gnl|bosTau2|chr5 (20760167-20760938)
               

               
               1-792, gnl|Hg17|chr12 (49867755-49866995)
               

               
               1-792, gnl|Mm7|chr15 (100561238-100560572)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)
               

               
               ebs (0.118301)

	1-792, gnl\|bosTau2\|chr5 (20760167-20760938)
	1-792, gnl\|Hg17\|chr12 (49867755-49866995)
	1-792, gnl\|Mm7\|chr15 (100561238-100560572)