Non-Coding RNA Search

Ss1.1-Pig4-TMW8040A19.5

Sequence:


               
               GATCTAAATCTCCCAAAATCACTTATTTTACAAGATATGCTAAGTGTGTTTTAATGGAGA
ATTCTCCTGGTGCTGATTTTGAAGTTTGGTTTTATGATGGGGCAAAGATACACAAAACAG
AAGATTTAATTCAGGTAATTGAAAAGACTGGGAAATCTTATAACTTAAAAGGTGAAAGTG
AAGTTAATAGCTTGAAAGAGGAAATAAAAATGTATATGGACCATGCTAATGAGGGCCACC
GTATTTGTTTAGCACTGGAATCCATAATTTCAGAAGAGGAAAAGAAAAGTGGAAGTGCTC
CCTTTTTCCCAATAATCATTGGAAGAAAACCTAGTAGTACTAGTTCACCCAAGGCCTTAT
CACCTCTTTCTCCTGTGGATCCAGACTACCCCATGACAGATACACCATCTCTGAATAGAA
TGATCATAAATAGTGCTGCTTCTCCGAAACAGGCACCAATACCTAATCCTTCTATGGTTA
CAAATGAAGGATTTAGCCTCACAGGTGCAGCTTCTGGAACAAACATCCCTTCCAATAGTC
CAAAAGATTGTCTCCCTAAATCAGCACAACTTTTGAAGTCCGTTTTTGTGAAAAATGTTG
GTTGGGCTACACAGTTAACTAGTGGAGCTGTGTGGGTTCAGTTTAATGATGGGTCCCAGC
TGGTCGTGCAAGCCGGAGTTTCTTCTATTAGTTACACATCACCAAATGGTCAGACAACTA
GGTATGGAGAAAATGAAAAACTACCAGAATACATCAAACAGAAATTACATTGTCTTTCTT
CCATCCTTTTGATGTTTTCTAATCCAACTCCTAGTTTTCATTGATTAAAGCTCCTGTTAG
ATATATAAGTTTAATAAATAACATTTTTGTTGGCTTTCAAGTAAAGTGACTTTTTTATTT
TAAAAAACTTCTTTGGAAAGCCTTTCTATAAAAGAGAATTTTTGACCAATACCATAATGG
ATGTATTTAATGAGAGAACAAAACAGAATGAAACTCAAGTCACTTAAAAAATGTAGCAGT
TGTAGATTAAAATAGGACACATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCTAAATCTCCCAAAATCACTTATTTTACAAGATATGCTAAGTGTGTTTTAATGGAGA
ATTCTCCTGGTGCTGATTTTGAAGTTTGGTTTTATGATGGGGCAAAGATACACAAAACAG
AAGATTTAATTCAGGTAATTGAAAAGACTGGGAAATCTTATAACTTAAAAGGTGAAAGTG
AAGTTAATAGCTTGAAAGAGGAAATAAAAATGTATATGGACCATGCTAATGAGGGCCACC
GTATTTGTTTAGCACTGGAATCCATAATTTCAGAAGAGGAAAAGAAAAGTGGAAGTGCTC
CCTTTTTCCCAATAATCATTGGAAGAAAACCTAGTAGTACTAGTTCACCCAAGGCCTTAT
CACCTCTTTCTCCTGTGGATCCAGACTACCCCATGACAGATACACCATCTCTGAATAGAA
TGATCATAAATAGTGCTGCTTCTCCGAAACAGGCACCAATACCTAATCCTTCTATGGTTA
CAAATGAAGGATTTAGCCTCACAGGTGCAGCTTCTGGAACAAACATCCCTTCCAATAGTC
CAAAAGATTGTCTCCCTAAATCAGCACAACTTTTGAAGTCCGTTTTTGTGAAAAATGTTG
GTTGGGCTACACAGTTAACTAGTGGAGCTGTGTGGGTTCAGTTTAATGATGGGTCCCAGC
TGGTCGTGCAAGCCGGAGTTTCTTCTATTAGTTACACATCACCAAATGGTCAGACAACTA
GGTATGGAGAAAATGAAAAACTACCAGAATACATCAAACAGAAATTACATTGTCTTTCTT
CCATCCTTTTGATGTTTTCTAATCCAACTCCTAGTTTTCATTGATTAAAGCTCCTGTTAG
ATATATAAGTTTAATAAATAACATTTTTGTTGGCTTTCAAGTAAAGTGACTTTTTTATTT
TAAAAAACTTCTTTGGAAAGCCTTTCTATAAAAGAGAATTTTTGACCAATACCATAATGG
ATGTATTTAATGAGAGAACAAAACAGAATGAAACTCAAGTCACTTAAAAAATGTAGCAGT
TGTAGATTAAAATAGGACACATAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|24987740|pdb|1MBY|B

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|24987740|pdb|1MBY|B

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               92-234, gnl|bosTau2|chr17 (18610414-18610556)
               

               
               92-234, gnl|Hg17|chr4 (129172037-129172179)
               

               
               92-234, gnl|Mm7|chr3 (40578524-40578665)
               


               
               324-473, gnl|bosTau2|chr17 (18610879-18611028)
               

               
               324-473, gnl|Hg17|chr4 (129172492-129172641)
               

               
               324-473, gnl|Mm7|chr3 (40579380-40579526)
               


               
               475-614, gnl|bosTau2|chr17 (18611771-18611910)
               

               
               475-614, gnl|Hg17|chr4 (129173714-129173853)
               

               
               475-614, gnl|Mm7|chr3 (40580118-40580242)
               


               
               719-1044, gnl|bosTau2|chr17 (18614359-18614677)
               

               
               719-1044, gnl|Hg17|chr4 (129177196-129177513)
               

               
               719-1044, gnl|Mm7|chr3 (40582963-40583260)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-234, gnl|bosTau2|chr17 (18610414-18610556)
               

               
               92-234, gnl|Hg17|chr4 (129172037-129172179)
               

               
               92-234, gnl|Mm7|chr3 (40578524-40578665)
               


               
               324-473, gnl|bosTau2|chr17 (18610879-18611028)
               

               
               324-473, gnl|Hg17|chr4 (129172492-129172641)
               

               
               324-473, gnl|Mm7|chr3 (40579380-40579526)
               


               
               475-614, gnl|bosTau2|chr17 (18611771-18611910)
               

               
               475-614, gnl|Hg17|chr4 (129173714-129173853)
               

               
               475-614, gnl|Mm7|chr3 (40580118-40580242)
               


               
               719-1044, gnl|bosTau2|chr17 (18614359-18614677)
               

               
               719-1044, gnl|Hg17|chr4 (129177196-129177513)
               

               
               719-1044, gnl|Mm7|chr3 (40582963-40583260)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               spl (0.286369)
               

               
               tes (0.207814)
               

               
               csk (0.140746)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               tes (0.207814)
               

               
               csk (0.140746)
               

               
               ebs (0.118301)

	92-234, gnl\|bosTau2\|chr17 (18610414-18610556)
	92-234, gnl\|Hg17\|chr4 (129172037-129172179)
	92-234, gnl\|Mm7\|chr3 (40578524-40578665)

	324-473, gnl\|bosTau2\|chr17 (18610879-18611028)
	324-473, gnl\|Hg17\|chr4 (129172492-129172641)
	324-473, gnl\|Mm7\|chr3 (40579380-40579526)

	475-614, gnl\|bosTau2\|chr17 (18611771-18611910)
	475-614, gnl\|Hg17\|chr4 (129173714-129173853)
	475-614, gnl\|Mm7\|chr3 (40580118-40580242)

	719-1044, gnl\|bosTau2\|chr17 (18614359-18614677)
	719-1044, gnl\|Hg17\|chr4 (129177196-129177513)
	719-1044, gnl\|Mm7\|chr3 (40582963-40583260)