Ss1.1-Pig4-TMW8040A20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCAGGCGGCCGAGTGCAGCGGCGCCGCCCGCATGGAGCCCAACGTGCGCTTCTGGATCA CTGAACGTCAATCTTTTATTCAGAGATTTCTTCAGTGGACAGAATTATTGGATCCTACAA ATTTGGTCATTTCAATTGAAAAAATAGAAAAATCTCGGCAACTTCTGTTAACAAATGAAG ACGCATCCAGAGGTGACTTGGAGGACAAAAGGATACAAGAAGCATGGAAGAGAAGCCTGT CAACAGTCCATCCTGACAATAGCAAGCTGATCCCTAGTCCTTTTCGACCTGCAGCTCTCC TGCCTTTCACGGCGCCCATGGTATTTTTGTCGATGCTGCCAGTCAAAAAGCTAAAGTCCA TGATTTTACCTCAGGTTTCCTTCTATACCTACAGCACCATCTTCAACCTCGTTAATGGGA ACGCAAGTTATGATCGTCGCCCCCATGAGAGTGTGTTACTAGGGGCAGGAGTAATTGCTT CTTCCACTTTTTTTGGATTACTCCCTCGTTTGCTCCAAGTAAAGTTCTCACTAAGCACCG TTTTGAGCAGAAACGTCATTCCTGTGCTCGTTCTGGCCCAGCTCAGTGGAATGAATGTGG TTGCGTCTCGAAGTTTGGAGCCCATGCGAGGGATTGAGGTCATGGACAAGGAAGGCAATG TCATAGGCTATTCCAGAAAAGCGGGGGCAAAGGCCATTAAAGATACAGCCACATCCAGAG TTGTGCTGTTTGGGAGCTCAGCTTTTATCCCGGAGGTCTTCTCATACTTTTTTAAAAGGA CCCAGTTTTTCCTGCAGTGTCCGTGGTCACTGTGGACCCTGAAGCTTTCTTGTACTATCC TTGTCATGGGGCTGATGGTGCCAGTTTCTTTCAGTGTCTTCCCCCAAATTGGCCGGATAC AGTGCAGTGAGCTTGAGAAGGAAATTCAGTCTGCAACAGAAGAAACAGAACTCTTCTATA ACAGAGGGGTGTAGGGGGTGAGTTTTCCCAGGATTTGTTTGGTTCCTTCATGAAAACCTT TCTCCAAGGTTTCAGTTTTGAGAACTCCGCCCGAGGTGTCCTGGAAACCCCAGAAGTGTC TGTGCCAACAGAATGGCTTACATATGCCAAGACTGTTTCAAGGCTGGTCACGCCTAGGGT TAAACAAACCTGGATGGAAGAGGAGAAATGGCAGCTGTCCGGTCTGACCCACCCCACGGG GTTGCTGGGTGGATAGTGATAGAAGATTCAGTCTTCCATTTGTTCCATCACCCTGTGAAG GGATACTGTGAAATTACAAATAAATTGTCCAAGGCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCAGGCGGCCGAGTGCAGCGGCGCCGCCCGCATGGAGCCCAACGTGCGCTTCTGGATCA CTGAACGTCAATCTTTTATTCAGAGATTTCTTCAGTGGACAGAATTATTGGATCCTACAA ATTTGGTCATTTCAATTGAAAAAATAGAAAAATCTCGGCAACTTCTGTTAACAAATGAAG ACGCATCCAGAGGTGACTTGGAGGACAAAAGGATACAAGAAGCATGGAAGAGAAGCCTGT CAACAGTCCATCCTGACAATAGCAAGCTGATCCCTAGTCCTTTTCGACCTGCAGCTCTCC TGCCTTTCACGGCGCCCATGGTATTTTTGTCGATGCTGCCAGTCAAAAAGCTAAAGTCCA TGATTTTACCTCAGGTTTCCTTCTATACCTACAGCACCATCTTCAACCTCGTTAATGGGA ACGCAAGTTATGATCGTCGCCCCCATGAGAGTGTGTTACTAGGGGCAGGAGTAATTGCTT CTTCCACTTTTTTTGGATTACTCCCTCGTTTGCTCCAAGTAAAGTTCTCACTAAGCACCG TTTTGAGCAGAAACGTCATTCCTGTGCTCGTTCTGGCCCAGCTCAGTGGAATGAATGTGG TTGCGTCTCGAAGTTTGGAGCCCATGCGAGGGATTGAGGTCATGGACAAGGAAGGCAATG TCATAGGCTATTCCAGAAAAGCGGGGGCAAAGGCCATTAAAGATACAGCCACATCCAGAG TTGTGCTGTTTGGGAGCTCAGCTTTTATCCCGGAGGTCTTCTCATACTTTTTTAAAAGGA CCCAGTTTTTCCTGCAGTGTCCGTGGTCACTGTGGACCCTGAAGCTTTCTTGTACTATCC TTGTCATGGGGCTGATGGTGCCAGTTTCTTTCAGTGTCTTCCCCCAAATTGGCCGGATAC AGTGCAGTGAGCTTGAGAAGGAAATTCAGTCTGCAACAGAAGAAACAGAACTCTTCTATA ACAGAGGGGTGTAGGGGGTGAGTTTTCCCAGGATTTGTTTGGTTCCTTCATGAAAACCTT TCTCCAAGGTTTCAGTTTTGAGAACTCCGCCCGAGGTGTCCTGGAAACCCCAGAAGTGTC TGTGCCAACAGAATGGCTTACATATGCCAAGACTGTTTCAAGGCTGGTCACGCCTAGGGT TAAACAAACCTGGATGGAAGAGGAGAAATGGCAGCTGTCCGGTCTGACCCACCCCACGGG GTTGCTGGGTGGATAGTGATAGAAGATTCAGTCTTCCATTTGTTCCATCACCCTGTGAAG GGATACTGTGAAATTACAAATAAATTGTCCAAGGCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1015-1134, - strand, RNAz p=0.63343 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1015-1134, - strand, RNAz p=0.63343 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 576-693, gnl|bosTau2|chr26 (26051178-26051295) | |
| 576-693, gnl|canFam2|chr28 (32384167-32384282) | |
| 576-693, gnl|canFam2|chr28 (32384098-32384300) | |
| 576-693, gnl|dasNov1|scaffold_30541 (7995-7880) | |
| 576-693, gnl|dasNov1|scaffold_56046 (45230-45429) | |
| 576-693, gnl|galGal2|chr6 (29045604-29045810) | |
| 576-693, gnl|hg17|chr10 (120904497-120904697) | |
| 576-693, gnl|Hg17|chr10 (120904680-120904563) | |
| 576-693, gnl|hg17|chr2 (143538759-143538876) | |
| 576-693, gnl|loxAfr1|scaffold_502 (84187-84072) | |
| 576-693, gnl|loxAfr1|scaffold_502 (84254-84054) | |
| 576-693, gnl|mm7|chr19 (60773667-60773782) | |
| 576-693, gnl|mm7|chr19 (60773598-60773799) | |
| 576-693, gnl|Mm7|chr19 (60773783-60773666) | |
| 576-693, gnl|oryCun1|scaffold_141235 (12744-12629) | |
| 576-693, gnl|oryCun1|scaffold_141235 (12804-12611) | |
| 576-693, gnl|panTro1|chr13 (32581967-32582084) | |
| 576-693, gnl|panTro1|chr8_random (7865787-7865587) | |
| 576-693, gnl|rheMac2|chr12 (6494186-6494303) | |
| 576-693, gnl|rheMac2|chr9 (118776539-118776739) | |
| 576-693, gnl|rn3|chr1 (267666598-267666713) | |
| 576-693, gnl|rn3|chr1 (267666529-267666730) | |
| 896-1289, gnl|bosTau2|chr26 (26058946-26059338) | |
| 896-1289, gnl|canFam2|chr28 (32371964-32372205) | |
| 896-1289, gnl|Hg17|chr10 (120890822-120890440) | |
| 896-1289, gnl|hg17|chr2 (143538269-143538545) | |
| 896-1289, gnl|mm7|chr19 (60761459-60761644) | |
| 896-1289, gnl|oryCun1|scaffold_103044 (1846-1629) | |
| 896-1289, gnl|panTro1|chr13 (32581477-32581753) | |
| 896-1289, gnl|rheMac2|chr12 (6493698-6493972) | |
| 896-1289, gnl|rn3|chr1 (267654298-267654519) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 576-693, gnl|bosTau2|chr26 (26051178-26051295) | |
| 576-693, gnl|canFam2|chr28 (32384167-32384282) | |
| 576-693, gnl|canFam2|chr28 (32384098-32384300) | |
| 576-693, gnl|dasNov1|scaffold_30541 (7995-7880) | |
| 576-693, gnl|dasNov1|scaffold_56046 (45230-45429) | |
| 576-693, gnl|galGal2|chr6 (29045604-29045810) | |
| 576-693, gnl|hg17|chr10 (120904497-120904697) | |
| 576-693, gnl|Hg17|chr10 (120904680-120904563) | |
| 576-693, gnl|hg17|chr2 (143538759-143538876) | |
| 576-693, gnl|loxAfr1|scaffold_502 (84187-84072) | |
| 576-693, gnl|loxAfr1|scaffold_502 (84254-84054) | |
| 576-693, gnl|mm7|chr19 (60773667-60773782) | |
| 576-693, gnl|mm7|chr19 (60773598-60773799) | |
| 576-693, gnl|Mm7|chr19 (60773783-60773666) | |
| 576-693, gnl|oryCun1|scaffold_141235 (12744-12629) | |
| 576-693, gnl|oryCun1|scaffold_141235 (12804-12611) | |
| 576-693, gnl|panTro1|chr13 (32581967-32582084) | |
| 576-693, gnl|panTro1|chr8_random (7865787-7865587) | |
| 576-693, gnl|rheMac2|chr12 (6494186-6494303) | |
| 576-693, gnl|rheMac2|chr9 (118776539-118776739) | |
| 576-693, gnl|rn3|chr1 (267666598-267666713) | |
| 576-693, gnl|rn3|chr1 (267666529-267666730) | |
| 896-1289, gnl|bosTau2|chr26 (26058946-26059338) | |
| 896-1289, gnl|canFam2|chr28 (32371964-32372205) | |
| 896-1289, gnl|Hg17|chr10 (120890822-120890440) | |
| 896-1289, gnl|hg17|chr2 (143538269-143538545) | |
| 896-1289, gnl|mm7|chr19 (60761459-60761644) | |
| 896-1289, gnl|oryCun1|scaffold_103044 (1846-1629) | |
| 896-1289, gnl|panTro1|chr13 (32581477-32581753) | |
| 896-1289, gnl|rheMac2|chr12 (6493698-6493972) | |
| 896-1289, gnl|rn3|chr1 (267654298-267654519) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| ssp (0.271039) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| thg (0.126791) | |
| cly (0.120642) | |
| nbm (0.0993246) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (0.271039) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| thg (0.126791) | |
| cly (0.120642) | |
| nbm (0.0993246) |