Ss1.1-Pig4-TMW8040B01.5
|
TCCTTCACTGAAACTGGATGGAGTTGACGCTTTGGGAAACTGAACACAATTCCTATCAAA
TTAGCGACAGCCTGGGGATTTATTGCCTTACCATTGAAATGCTGCCACCTCCCAGATGGG
GCGTGACAAGTGACCAGCAGCTGTGGACGGCTTCCTGAGAGTGGGAGCCAGAGGGAAGCC
TGCCAGCCCTGTGGCAATCACAAGCAGGAATCCAAACCCCTGGCGGGGCCGAGTTCCCAT
ACAAGGTTTGGTCCAACCCTGTTTGGACCAAACACGGTTTGACGAACTGCTGGGAAATGA
TGTAAAGCTCTCCTTGACCTTTGTGGAGGGTGGGTCACAGCATCTAACGGGTAACAGGCT
GCTCTTCGATGCTGAGATTCCTTGCTTGATGTGGGCATTGAGAACCATTTTTAAGCTTTC
TTTTCAGCAATGTGACAGGACTTTGCCCTGCTTTGGTTTTAGAGGTTTAGCACAACCACG
GTCCAGGGTGCGACTGAGACGTCTATTCCATGGGAGACCAAAAGTCTTTCTCCCCCCAAG
AGGCCCTAGCATTGATGACAGGTTCGAAGGCTCAGAATAGGGGACATTGGTTCCCACAGA
ATGTAGTTCCACCTTCTTCATCTCCCAAGCCGATCTTTTTTTGTTTGTTTGTTTTCTATT
TCAAGGCTTTATAGAACTTATTTGTAACACATTTTAATGAAATATCAATAAAAATTGATG
ACATAACTTCAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCCTTCACTGAAACTGGATGGAGTTGACGCTTTGGGAAACTGAACACAATTCCTATCAAA
TTAGCGACAGCCTGGGGATTTATTGCCTTACCATTGAAATGCTGCCACCTCCCAGATGGG
GCGTGACAAGTGACCAGCAGCTGTGGACGGCTTCCTGAGAGTGGGAGCCAGAGGGAAGCC
TGCCAGCCCTGTGGCAATCACAAGCAGGAATCCAAACCCCTGGCGGGGCCGAGTTCCCAT
ACAAGGTTTGGTCCAACCCTGTTTGGACCAAACACGGTTTGACGAACTGCTGGGAAATGA
TGTAAAGCTCTCCTTGACCTTTGTGGAGGGTGGGTCACAGCATCTAACGGGTAACAGGCT
GCTCTTCGATGCTGAGATTCCTTGCTTGATGTGGGCATTGAGAACCATTTTTAAGCTTTC
TTTTCAGCAATGTGACAGGACTTTGCCCTGCTTTGGTTTTAGAGGTTTAGCACAACCACG
GTCCAGGGTGCGACTGAGACGTCTATTCCATGGGAGACCAAAAGTCTTTCTCCCCCCAAG
AGGCCCTAGCATTGATGACAGGTTCGAAGGCTCAGAATAGGGGACATTGGTTCCCACAGA
ATGTAGTTCCACCTTCTTCATCTCCCAAGCCGATCTTTTTTTGTTTGTTTGTTTTCTATT
TCAAGGCTTTATAGAACTTATTTGTAACACATTTTAATGAAATATCAATAAAAATTGATG
ACATAACTTCAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3-499, gnl|bosTau2|chr11 (52170932-52171456) |
|
3-499, gnl|Hg17|chr2 (27836212-27836709) |
|
3-499, gnl|Mm7|chr5 (30594803-30595294) |
| |
|
531-642, gnl|bosTau2|chr11 (52171531-52171646) |
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531-642, gnl|canFam2|chr17 (24823646-24823892) |
|
531-642, gnl|dasNov1|scaffold_43438 (7763-7555) |
|
531-642, gnl|echTel1|scaffold_290655 (99196-99393) |
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531-642, gnl|hg17|chr2 (27836620-27836861) |
|
531-642, gnl|Hg17|chr2 (27836749-27836860) |
|
531-642, gnl|mm7|chr5 (30595211-30595431) |
|
531-642, gnl|panTro1|chr12 (28777607-28777848) |
|
531-642, gnl|rheMac2|chr13 (27683358-27683599) |
|
531-642, gnl|rn3|chr6 (24957949-24957722) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-499, gnl|bosTau2|chr11 (52170932-52171456) |
|
3-499, gnl|Hg17|chr2 (27836212-27836709) |
|
3-499, gnl|Mm7|chr5 (30594803-30595294) |
| |
|
531-642, gnl|bosTau2|chr11 (52171531-52171646) |
|
531-642, gnl|canFam2|chr17 (24823646-24823892) |
|
531-642, gnl|dasNov1|scaffold_43438 (7763-7555) |
|
531-642, gnl|echTel1|scaffold_290655 (99196-99393) |
|
531-642, gnl|hg17|chr2 (27836620-27836861) |
|
531-642, gnl|Hg17|chr2 (27836749-27836860) |
|
531-642, gnl|mm7|chr5 (30595211-30595431) |
|
531-642, gnl|panTro1|chr12 (28777607-28777848) |
|
531-642, gnl|rheMac2|chr13 (27683358-27683599) |
|
531-642, gnl|rn3|chr6 (24957949-24957722) |
|
cje (0.330469) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
fhi (0.169578) |
|
isp (0.150376) |
|
csk (0.140746) |
|
ret (0.128733) |
|
cje (0.330469) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
fhi (0.169578) |
|
isp (0.150376) |
|
csk (0.140746) |
|
ret (0.128733) |
