Non-Coding RNA Search

Ss1.1-Pig4-TMW8040B08.3

Sequence:


               
               GCCGAGAAAACTTTTTCCCTGCGGCTGTGGCCCTCACGGGCTCCGAGCCCATGCCGACAG
ATGTCCTCCAGCGGCCCAGTGATGCCCACACCAAGCCTCGTCCTGTGCCAGCCACCACCT
CGGCTGTCATCACTTGTCCTCCCTCGGCGTCAGCTTCTACCCCAGACCCGGCTGAGGACC
CTGGGCCCCCACAGCTACACAGGCCCGAGGCCACCTCCCTGGACCCAGAGGAAGAGCTGG
CAGGAGAAGGGGCAGAGGGCACGGGCTTCCCACCCCAGGAGCCACCGAGCAGTGAACAGG
TGAAGACAGCACCTGAGGGCCCCCCAGCAGAGCCACACTGCTGGCCAGCCGAGGCCACAT
CCCGGACAGGCACTGAGCCCACCTGCAGCCAGGGCTCCAGCTGCAAGGTGCCCAGTGGTG
GGAGTGCCCAGCCACCCGAGGGCCACCTGGGTAAAACCGAGCCCAGCCGGGCCAAGTCAC
GCCTCCTGCCCAACATGCCAAAGCTGGTCATCCCCTCTGCTGCCACCAAGTTCCCCCCTG
AGATCACCGTCACGCCACCCACCCCTACCCTGCTCTCGCCCAAAGGCAGCATCTCGGAGG
AGACCAAGCAGAAGCTGAAGTCGGCCATCCTGTCTGCTCAGTCGGCTGCCAACGTGAGGA
AGGAGAGCCTGTGCCAGCCAGCCCTGGAGGTCCTGGAGACGTCGAGCCAAGAGTCCTCGC
TGGAGAGCGAGACGGACGAGGATGATGACTACATGGACGTCTGAGGGCCTCCCGCACCCC
ACCTGCCCAGCCACAGGCCATGTGAGCTCAGCAGGCTGCTTCCTTTTTATGAAGCATTGA
CTTTGTACATGTGCCCGCCCCCAGCCCAGGTGGCCATGCCACGCTCCACAGGCTCTGCCT
GGTTCATGGCGGCGAGGGTCCTTTTTTGGTTGCTTTTCTAATAAAGATGGAACAGTTAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGAGAAAACTTTTTCCCTGCGGCTGTGGCCCTCACGGGCTCCGAGCCCATGCCGACAG
ATGTCCTCCAGCGGCCCAGTGATGCCCACACCAAGCCTCGTCCTGTGCCAGCCACCACCT
CGGCTGTCATCACTTGTCCTCCCTCGGCGTCAGCTTCTACCCCAGACCCGGCTGAGGACC
CTGGGCCCCCACAGCTACACAGGCCCGAGGCCACCTCCCTGGACCCAGAGGAAGAGCTGG
CAGGAGAAGGGGCAGAGGGCACGGGCTTCCCACCCCAGGAGCCACCGAGCAGTGAACAGG
TGAAGACAGCACCTGAGGGCCCCCCAGCAGAGCCACACTGCTGGCCAGCCGAGGCCACAT
CCCGGACAGGCACTGAGCCCACCTGCAGCCAGGGCTCCAGCTGCAAGGTGCCCAGTGGTG
GGAGTGCCCAGCCACCCGAGGGCCACCTGGGTAAAACCGAGCCCAGCCGGGCCAAGTCAC
GCCTCCTGCCCAACATGCCAAAGCTGGTCATCCCCTCTGCTGCCACCAAGTTCCCCCCTG
AGATCACCGTCACGCCACCCACCCCTACCCTGCTCTCGCCCAAAGGCAGCATCTCGGAGG
AGACCAAGCAGAAGCTGAAGTCGGCCATCCTGTCTGCTCAGTCGGCTGCCAACGTGAGGA
AGGAGAGCCTGTGCCAGCCAGCCCTGGAGGTCCTGGAGACGTCGAGCCAAGAGTCCTCGC
TGGAGAGCGAGACGGACGAGGATGATGACTACATGGACGTCTGAGGGCCTCCCGCACCCC
ACCTGCCCAGCCACAGGCCATGTGAGCTCAGCAGGCTGCTTCCTTTTTATGAAGCATTGA
CTTTGTACATGTGCCCGCCCCCAGCCCAGGTGGCCATGCCACGCTCCACAGGCTCTGCCT
GGTTCATGGCGGCGAGGGTCCTTTTTTGGTTGCTTTTCTAATAAAGATGGAACAGTTAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|39654239|pdb|1N6J|G

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|39654239|pdb|1N6J|G

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               619-956, gnl|bosTau2|chr17 (44685805-44686159)
               

               
               619-956, gnl|Hg17|chr22 (22898573-22899149)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               619-956, gnl|bosTau2|chr17 (44685805-44686159)
               

               
               619-956, gnl|Hg17|chr22 (22898573-22899149)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               elu (0.385356)
               

               
               hyp (0.285673)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               hyp (0.285673)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

	619-956, gnl\|bosTau2\|chr17 (44685805-44686159)
	619-956, gnl\|Hg17\|chr22 (22898573-22899149)

	elu (0.385356)
	hyp (0.285673)
	nco (0.161734)
	cag (0.151194)
	lnt (0.142308)
	che (0.136314)
	cov (0.132153)
	jca (0.11396)