Non-Coding RNA Search

Ss1.1-Pig4-TMW8040B15.3

Sequence:


               
               GCGGCCGCCGCGGGCGCCTCGCTCTACGGCGCCTCTGGCCCCTTCCAGCGCGCCGCCCTG
CCCGTGGCGCCCGTGGGACTCTACACAGCCCACGTAGGCTACAGCATGTACCACCTGACA
TAGAGGGCCCAGGGTCGCGCACCTGCGGTGCCAGCTGATTCCTCCAGCGCCGATCCCGGG
CGAGCAGCAGGAGGCTTCCTCTGCTCGCTCCCCTGTTCGGCACCCACTGGCTCCTTCCCC
TTAAGCCCCGCACGGCTGTGGTTTCTCCTCGGTTGCTCCCCGAGTTCATTCTCTGAAGTC
TGATCCCCTCCCTAAAAGTGGCTAGAAGGGTCCCCTCGAACTCTTCTAGAATCTAGATCT
TCCCTCTCCTGTTAGAGATGGGGAAACAGTGGCCCGAGAGGCTGAGAAATCTATCCCAAG
CCCCCAGCAGAGTTCGCGGTGGGACCGCAAGTAGGGGCCTTTGCTCCTGCATCCATGGCC
AGCTGCCTCCTGTCCTGACACCAGACAGGAAAAGCCCAGACAAATTCATGTTGGAAGATT
TTGGAAATGAGAACGGTCGGAGAAAAGAGAATAACTGTCCGGGGGAGACAGGTCCCAGCT
CCTTCCACTGGAAAACTTCAGCAGCAAAACATTTGGCTTTGGGGGGGGGGGTATACACAG
ATGCGTGACAAAGGTAGGTTACCAGTACCAGAAAGAAATGTAAAATAAAAATTAAAAATT
CTGTTTCTATTTAACAGTGCATTGGGGTGGCTCTCGCGATTCCCTTTGGAAGGGACTGTT
GTAATATACTGTATATTTGAAATTTTATTATCATTTATATTATAGCTATATTTGTTAAAT
AATTAATTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCCGCGGGCGCCTCGCTCTACGGCGCCTCTGGCCCCTTCCAGCGCGCCGCCCTG
CCCGTGGCGCCCGTGGGACTCTACACAGCCCACGTAGGCTACAGCATGTACCACCTGACA
TAGAGGGCCCAGGGTCGCGCACCTGCGGTGCCAGCTGATTCCTCCAGCGCCGATCCCGGG
CGAGCAGCAGGAGGCTTCCTCTGCTCGCTCCCCTGTTCGGCACCCACTGGCTCCTTCCCC
TTAAGCCCCGCACGGCTGTGGTTTCTCCTCGGTTGCTCCCCGAGTTCATTCTCTGAAGTC
TGATCCCCTCCCTAAAAGTGGCTAGAAGGGTCCCCTCGAACTCTTCTAGAATCTAGATCT
TCCCTCTCCTGTTAGAGATGGGGAAACAGTGGCCCGAGAGGCTGAGAAATCTATCCCAAG
CCCCCAGCAGAGTTCGCGGTGGGACCGCAAGTAGGGGCCTTTGCTCCTGCATCCATGGCC
AGCTGCCTCCTGTCCTGACACCAGACAGGAAAAGCCCAGACAAATTCATGTTGGAAGATT
TTGGAAATGAGAACGGTCGGAGAAAAGAGAATAACTGTCCGGGGGAGACAGGTCCCAGCT
CCTTCCACTGGAAAACTTCAGCAGCAAAACATTTGGCTTTGGGGGGGGGGGTATACACAG
ATGCGTGACAAAGGTAGGTTACCAGTACCAGAAAGAAATGTAAAATAAAAATTAAAAATT
CTGTTTCTATTTAACAGTGCATTGGGGTGGCTCTCGCGATTCCCTTTGGAAGGGACTGTT
GTAATATACTGTATATTTGAAATTTTATTATCATTTATATTATAGCTATATTTGTTAAAT
AATTAATTTTAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-119, - strand, RNAz p=0.668001
               

               
               704-811, - strand, RNAz p=0.888554

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.668001
               

               
               704-811, - strand, RNAz p=0.888554

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-852, gnl|bosTau2|chr6 (61290563-61289691)
               

               
               1-852, gnl|Hg17|chr4 (4982820-4983725)
               

               
               1-852, gnl|Mm7|chr5 (36902776-36901895)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr6 (61290563-61289691)
               

               
               1-852, gnl|Hg17|chr4 (4982820-4983725)
               

               
               1-852, gnl|Mm7|chr5 (36902776-36901895)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               fbs (0.175346)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               pgl (0.118483)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               pgl (0.118483)

	1-119, - strand, RNAz p=0.668001
	704-811, - strand, RNAz p=0.888554

	1-852, gnl\|bosTau2\|chr6 (61290563-61289691)
	1-852, gnl\|Hg17\|chr4 (4982820-4983725)
	1-852, gnl\|Mm7\|chr5 (36902776-36901895)