Ss1.1-Pig4-TMW8040B17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGAGGAGAGTGAGGAGGAGCTGGATGACGGCGACGACTGGGAGGATATTGACTCTGATG AGGAAGTGGAGTGTGAGGATGGTGAAGCCCTGGACGAGGAGGAGGAGCAGGATGCAGAGG AGGAAGAGGCTGGAGGAAGCCCCCCGCTTGGTGCCATCCCCATAACGGACTGCTTATTTT GTCCCCATCATTCAAGCTCCCTGGTGAAGAATGTGGCTCATATGACTAAAGTCCACAGCT TCTTTCTTCCTGATGTAGAGTATCTGTCAGACCTTAAGGGACTGATTAAATATTTGGGAG AGAAAGTTGGTGTTGGGAAGATTTGCTTGTGGTGCAATGAGAAAGGGAAGTCCTTCTACT CCACGGAAGCCGTGCAGGCTCACATGCATGACAGGAGCCACTGTAAGCTCTTCACAGATG GGGATGCTCTTTTGGAATTTGCAGACTTCTATGATTTTAGGAGTAGCTACCCGGATCACA AGGAAGGGGAGGACCCTGATGAGACCGAGGCACTGCCCTCAGAGAAGCCCTTGGGATATG ATGATGACACCATGGAGCTGATCCTCCCTTCTGGTGCCAGAGTGGGTCATCGCTCCTTGA TGAGATACTACAAACAGCGGTTTGGCTTATCCAGAGCTGTGGCGGTTGCCAGGAATCAGA AGGCTGTGGGCCGGGTGCTCCAGCAGTACAGAGCCCTGGGCTGGACGGGCAGCACAGGAG CAGCTCTCGTGCGCCAGCGGGACATGCAGTATGTCCAGAGGATGAAGTCGAAATGGCTGC TGAAGATGGGCGTGAAGAACAATGCCACCAAGCAGATGCACTTCAGGCCCCAAGTGATGT TCTGAGTGGGCCGGGGACTGAGGCGCCGTCTGTGTCCCGCTCAAGCATCGTCCTCGCCTG AGGACCGTGGAAGCGGGATTGGGCAGCAGCCCCTTTTGCTGCTGCGCTTGCTCTGTCCTG ACCTGATAATAAAGTCAGAATCATAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGAGGAGAGTGAGGAGGAGCTGGATGACGGCGACGACTGGGAGGATATTGACTCTGATG AGGAAGTGGAGTGTGAGGATGGTGAAGCCCTGGACGAGGAGGAGGAGCAGGATGCAGAGG AGGAAGAGGCTGGAGGAAGCCCCCCGCTTGGTGCCATCCCCATAACGGACTGCTTATTTT GTCCCCATCATTCAAGCTCCCTGGTGAAGAATGTGGCTCATATGACTAAAGTCCACAGCT TCTTTCTTCCTGATGTAGAGTATCTGTCAGACCTTAAGGGACTGATTAAATATTTGGGAG AGAAAGTTGGTGTTGGGAAGATTTGCTTGTGGTGCAATGAGAAAGGGAAGTCCTTCTACT CCACGGAAGCCGTGCAGGCTCACATGCATGACAGGAGCCACTGTAAGCTCTTCACAGATG GGGATGCTCTTTTGGAATTTGCAGACTTCTATGATTTTAGGAGTAGCTACCCGGATCACA AGGAAGGGGAGGACCCTGATGAGACCGAGGCACTGCCCTCAGAGAAGCCCTTGGGATATG ATGATGACACCATGGAGCTGATCCTCCCTTCTGGTGCCAGAGTGGGTCATCGCTCCTTGA TGAGATACTACAAACAGCGGTTTGGCTTATCCAGAGCTGTGGCGGTTGCCAGGAATCAGA AGGCTGTGGGCCGGGTGCTCCAGCAGTACAGAGCCCTGGGCTGGACGGGCAGCACAGGAG CAGCTCTCGTGCGCCAGCGGGACATGCAGTATGTCCAGAGGATGAAGTCGAAATGGCTGC TGAAGATGGGCGTGAAGAACAATGCCACCAAGCAGATGCACTTCAGGCCCCAAGTGATGT TCTGAGTGGGCCGGGGACTGAGGCGCCGTCTGTGTCCCGCTCAAGCATCGTCCTCGCCTG AGGACCGTGGAAGCGGGATTGGGCAGCAGCCCCTTTTGCTGCTGCGCTTGCTCTGTCCTG ACCTGATAATAAAGTCAGAATCATAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 33-302, gnl|bosTau2|chr20 (32701018-32701287) | |
| 33-302, gnl|Hg17|chr5 (16516855-16516586) | |
| 33-302, gnl|Mm7|chr15 (26089842-26090099) | |
| 573-718, gnl|bosTau2|chr20 (32711601-32711746) | |
| 573-718, gnl|canFam2|chr4 (90151449-90151289) | |
| 573-718, gnl|danRer3|chrNA (166785790-166785954) | |
| 573-718, gnl|echTel1|scaffold_307913 (20624-20775) | |
| 573-718, gnl|fr1|chrUn (267418021-267418166) | |
| 573-718, gnl|galGal2|chr2 (75639286-75639137) | |
| 573-718, gnl|hg17|chr5 (16506105-16506269) | |
| 573-718, gnl|Hg17|chr5 (16506266-16506121) | |
| 573-718, gnl|loxAfr1|scaffold_74557 (5802-5663) | |
| 573-718, gnl|mm7|chr15 (26099312-26099152) | |
| 573-718, gnl|Mm7|chr15 (26099153-26099298) | |
| 573-718, gnl|monDom2|scaffold_4 (39050220-39050385) | |
| 573-718, gnl|oryCun1|scaffold_106480 (2038-2202) | |
| 573-718, gnl|panTro1|chr4 (16936166-16936330) | |
| 573-718, gnl|rheMac2|chr6 (16647167-16647331) | |
| 573-718, gnl|rn3|chr2 (77512807-77512647) | |
| 573-718, gnl|tetNig1|chr15 (565264-565403) | |
| 573-718, gnl|xenTro1|scaffold_121 (1063744-1063593) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 33-302, gnl|bosTau2|chr20 (32701018-32701287) | |
| 33-302, gnl|Hg17|chr5 (16516855-16516586) | |
| 33-302, gnl|Mm7|chr15 (26089842-26090099) | |
| 573-718, gnl|bosTau2|chr20 (32711601-32711746) | |
| 573-718, gnl|canFam2|chr4 (90151449-90151289) | |
| 573-718, gnl|danRer3|chrNA (166785790-166785954) | |
| 573-718, gnl|echTel1|scaffold_307913 (20624-20775) | |
| 573-718, gnl|fr1|chrUn (267418021-267418166) | |
| 573-718, gnl|galGal2|chr2 (75639286-75639137) | |
| 573-718, gnl|hg17|chr5 (16506105-16506269) | |
| 573-718, gnl|Hg17|chr5 (16506266-16506121) | |
| 573-718, gnl|loxAfr1|scaffold_74557 (5802-5663) | |
| 573-718, gnl|mm7|chr15 (26099312-26099152) | |
| 573-718, gnl|Mm7|chr15 (26099153-26099298) | |
| 573-718, gnl|monDom2|scaffold_4 (39050220-39050385) | |
| 573-718, gnl|oryCun1|scaffold_106480 (2038-2202) | |
| 573-718, gnl|panTro1|chr4 (16936166-16936330) | |
| 573-718, gnl|rheMac2|chr6 (16647167-16647331) | |
| 573-718, gnl|rn3|chr2 (77512807-77512647) | |
| 573-718, gnl|tetNig1|chr15 (565264-565403) | |
| 573-718, gnl|xenTro1|scaffold_121 (1063744-1063593) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| col (0.390016) | |
| fbs (0.175346) | |
| nco (0.161734) | |
| nca (0.136874) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.390016) | |
| fbs (0.175346) | |
| nco (0.161734) | |
| nca (0.136874) | |
| jca (0.11396) | |
| cty (0.10408) |