Non-Coding RNA Search

Ss1.1-Pig4-TMW8040B21.3

Sequence:


               
               GTCATGATGGTATTAATGTGGGGAAACATTGATTATGAAATTTAGGGATAAATTACCACC
CGTGGTCTGTATCTTCAGTATTTTAAGCAGCAGTCACTAATACAATTTCAGATTAACACC
AATTTTGTTCCCTAATAGCTGTAGCTAAAACAGTATATTGCTGCTTTAAATTTCTACCTC
TAGCAGATCTTTATTGGAGGGAGTTTTCCTTTGTATTTTTTTATGTTTACTATCTTGTTT
TCCAATAGCTTGAAAAGTAGAGATGACTTAATGTTTTAAGCTTTTCTTGAAGAAAAGGAC
ATGATATTGAATATTTTCACAGATGATTGTGATGGCATTAAGTGACCTCTGTGGCAATTT
GGATTAGATAGACTTAATCTCAGATAATGTGCTGGTGGTATAAATGTCATGTTCTCATAG
GAAAACTTACTTACAAATCCTTAGACCTTCACTGTTAGTTAGATTGGGGGAATCACTACA
CAATCTGGCTTCTTACTCATAGGACCTTTTCTGCACACACTACAGGAGTTCCTGTGGCCT
TTATGCCCATGATGCAATAAAAGATTCCATGAAGTTAAGTTGATTTGTCAGGTTATAGAT
ACCTGATGTAACCTATTGGGTGTTTTTGAAAAAATGTTTCTCTTTTTTGTTCCTTAGTAC
ATGGCAGATATTTATTTGGGAATTCTCCCTACCCACCACATAGATGAGCTTGAAATTAAA
TACAAGGGGGAAAATTATTATTTTCTTTTAAAGAAGGAAATTTAAAAGTAGCATAAGTAT
TTTTTAAAAAATCCATTGAAAAGAAAGAAATGCATGATGTTTGTAATTTAGAAATGCTTT
TTATTCACTGGTTAGTATTCACTTTTTTACAACTTATATCAAAACAAATGATCTTGATTT
TCTTATAAAGAAAAAAACCAGGTTGACACCAATGAGTTGGCTTTATTACTTAAAATTTTT
GCTATCAGGTTTTATTCTTTAATAATGTTACTTATATTTCTAAATTATAGCTTATATTTT
AGTTAATTCCAGAATCAGTTATTTCATGTTTCTGATTTCTCCCTCATACCATGAATACTA
TTTTCTAAATGTACTACACAAATTTGCATCACTTTTTTTCTCTTATAGCTTTTGTAGTTA
ATACATTCTAAACTTGAAAATTGTGGTATCAATCAATAATAGAGGTATCACTGGAGGATT
TAATTTTGTATTTCTTATGTGTAGTCCTAGCTACTAAAGTGTGTAAGTTTAAAAATTTTT
TTCCTAAGTAACTGTACACACAGATGTTTTCATTCATTTTCATAAAGTGGAAGGAGGTAG
ATTGTTGTGCTTTTTTTTTTTAATTTCCATAATCTAAAGCAGTGCAGGCTAGGGTATATT
AATCAAGTAAGCAAAATGGGTTATGTAAAATATAAAGAGAAGCTGTATAAATCACAGTAT
AAAATTATGAAGTTTGGGAACTGTAAAATGTACTGTACTTATATGTAACTCTCATCCTAA
AAGTTGCCACAAAGGCTGAATTGGAAGCTTCATGTCTGCATGAAATTTCCTATATTTTTA
ATGTGTATGATGGACTTAATTTTTCTTGAATATTAAAGTCTGCCAGTTGCTATGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCATGATGGTATTAATGTGGGGAAACATTGATTATGAAATTTAGGGATAAATTACCACC
CGTGGTCTGTATCTTCAGTATTTTAAGCAGCAGTCACTAATACAATTTCAGATTAACACC
AATTTTGTTCCCTAATAGCTGTAGCTAAAACAGTATATTGCTGCTTTAAATTTCTACCTC
TAGCAGATCTTTATTGGAGGGAGTTTTCCTTTGTATTTTTTTATGTTTACTATCTTGTTT
TCCAATAGCTTGAAAAGTAGAGATGACTTAATGTTTTAAGCTTTTCTTGAAGAAAAGGAC
ATGATATTGAATATTTTCACAGATGATTGTGATGGCATTAAGTGACCTCTGTGGCAATTT
GGATTAGATAGACTTAATCTCAGATAATGTGCTGGTGGTATAAATGTCATGTTCTCATAG
GAAAACTTACTTACAAATCCTTAGACCTTCACTGTTAGTTAGATTGGGGGAATCACTACA
CAATCTGGCTTCTTACTCATAGGACCTTTTCTGCACACACTACAGGAGTTCCTGTGGCCT
TTATGCCCATGATGCAATAAAAGATTCCATGAAGTTAAGTTGATTTGTCAGGTTATAGAT
ACCTGATGTAACCTATTGGGTGTTTTTGAAAAAATGTTTCTCTTTTTTGTTCCTTAGTAC
ATGGCAGATATTTATTTGGGAATTCTCCCTACCCACCACATAGATGAGCTTGAAATTAAA
TACAAGGGGGAAAATTATTATTTTCTTTTAAAGAAGGAAATTTAAAAGTAGCATAAGTAT
TTTTTAAAAAATCCATTGAAAAGAAAGAAATGCATGATGTTTGTAATTTAGAAATGCTTT
TTATTCACTGGTTAGTATTCACTTTTTTACAACTTATATCAAAACAAATGATCTTGATTT
TCTTATAAAGAAAAAAACCAGGTTGACACCAATGAGTTGGCTTTATTACTTAAAATTTTT
GCTATCAGGTTTTATTCTTTAATAATGTTACTTATATTTCTAAATTATAGCTTATATTTT
AGTTAATTCCAGAATCAGTTATTTCATGTTTCTGATTTCTCCCTCATACCATGAATACTA
TTTTCTAAATGTACTACACAAATTTGCATCACTTTTTTTCTCTTATAGCTTTTGTAGTTA
ATACATTCTAAACTTGAAAATTGTGGTATCAATCAATAATAGAGGTATCACTGGAGGATT
TAATTTTGTATTTCTTATGTGTAGTCCTAGCTACTAAAGTGTGTAAGTTTAAAAATTTTT
TTCCTAAGTAACTGTACACACAGATGTTTTCATTCATTTTCATAAAGTGGAAGGAGGTAG
ATTGTTGTGCTTTTTTTTTTTAATTTCCATAATCTAAAGCAGTGCAGGCTAGGGTATATT
AATCAAGTAAGCAAAATGGGTTATGTAAAATATAAAGAGAAGCTGTATAAATCACAGTAT
AAAATTATGAAGTTTGGGAACTGTAAAATGTACTGTACTTATATGTAACTCTCATCCTAA
AAGTTGCCACAAAGGCTGAATTGGAAGCTTCATGTCTGCATGAAATTTCCTATATTTTTA
ATGTGTATGATGGACTTAATTTTTCTTGAATATTAAAGTCTGCCAGTTGCTATGAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1509-1620, gnl|bosTau2|chr17 (31535610-31535721)
               

               
               1509-1620, gnl|Hg17|chr9 (74825598-74825490)
               

               
               1509-1620, gnl|Mm7|chr19 (18407493-18407597)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1509-1620, gnl|bosTau2|chr17 (31535610-31535721)
               

               
               1509-1620, gnl|Hg17|chr9 (74825598-74825490)
               

               
               1509-1620, gnl|Mm7|chr19 (18407493-18407597)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               cbe (0.478469)
               

               
               tra (0.369276)
               

               
               tbr (0.308356)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               tra (0.369276)
               

               
               tbr (0.308356)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	1509-1620, gnl\|bosTau2\|chr17 (31535610-31535721)
	1509-1620, gnl\|Hg17\|chr9 (74825598-74825490)
	1509-1620, gnl\|Mm7\|chr19 (18407493-18407597)

	cbe (0.478469)
	tra (0.369276)
	tbr (0.308356)
	mgp (0.230681)
	sag (0.182715)
	fhi (0.169578)
	mga (0.160205)
	fco (0.157208)
	lin (0.145603)
	spl (0.143184)
	nca (0.136874)
	kid (0.129735)
	med (0.116252)
	eje (0.0988338)