Ss1.1-Pig4-TMW8040C06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGTGTCTTCTGGCCAAGTGTTTCCTCGACCACAAGACGCTGTACTATGACACGGACCC CTTCCTCTTCTACGTCATGACGGAGTATGACTGCAAGGGCTTCCACATTGTGGGTTACTT CTCCAAGGAAAAGGAATCCACGGAAGACTACAACGTGGCCTGCATCCTGACCCTGCCTCC CTACCAGCGCCGGGGCTACGGCAAGCTGCTGATCGAGTTCAGCTATGAACTCTCCAAAGT GGAAGGGAAAACAGGGACCCCTGAGAAGCCCCTCTCGGACCTTGGCCTCCTATCCTACCG AAGCTACTGGTCCCAGACCATTCTGGAGATCTTGATGGGGCTGAAGTCGGAGAGCGGGGA GAGGCCGCAGATCACCATCAATGAGATCAGTGAAATCACCAGCATCAAGAAGGAGGACGT CATCTCCACTCTACAGTACCTCAACCTCATCAACTACTACAAGGGCCAGTATATCCTCAC ACTGTCGGAGGACATCGTGGACGGGCATGAACGGGCTATGCTCAAGCGGCTTCTTCGGAT CGACTCCAAGTGTCTGCACTTCACTCCCAAGGACTGGAGCAAGAGGGGAAAGTGGTGACC AGGCACTGCCCATTAGCAGTGCCGGCAAAGCCAGCAGAACTGGGGCTGACAGCCTATCCC GCCCCCACTGGGGTCTCCAAGAGGCACAGCAAGGGGAGACAGGGCTGAGGACAGCTCCAC AGGGAGAGGACAGGCCTGGTAAAGGCCAGCTGGTGCCTAGCACCAAGGAGAGCTCAGGGC TCAGGTCAACTCCAAGGTCAGCTGGCTGCAGGCCCAGGCCTGCTGTGAACCAGGGACCAG AGGGAGCCAGGCAGCTGTGTACAGTGAGATAGGGGGTGGGGTGCTCTGTACAGGGGGCTG GTGGCTGTACAATTTTCTTTTGTAAAGTAGGAATGGGGGGGAGGTACTGGCTGCAAAATT CTGGCCTCTTTTGCCCCACTGCCCCCTGGCAATAAACTGTTTCTATGGGCCAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGTGTCTTCTGGCCAAGTGTTTCCTCGACCACAAGACGCTGTACTATGACACGGACCC CTTCCTCTTCTACGTCATGACGGAGTATGACTGCAAGGGCTTCCACATTGTGGGTTACTT CTCCAAGGAAAAGGAATCCACGGAAGACTACAACGTGGCCTGCATCCTGACCCTGCCTCC CTACCAGCGCCGGGGCTACGGCAAGCTGCTGATCGAGTTCAGCTATGAACTCTCCAAAGT GGAAGGGAAAACAGGGACCCCTGAGAAGCCCCTCTCGGACCTTGGCCTCCTATCCTACCG AAGCTACTGGTCCCAGACCATTCTGGAGATCTTGATGGGGCTGAAGTCGGAGAGCGGGGA GAGGCCGCAGATCACCATCAATGAGATCAGTGAAATCACCAGCATCAAGAAGGAGGACGT CATCTCCACTCTACAGTACCTCAACCTCATCAACTACTACAAGGGCCAGTATATCCTCAC ACTGTCGGAGGACATCGTGGACGGGCATGAACGGGCTATGCTCAAGCGGCTTCTTCGGAT CGACTCCAAGTGTCTGCACTTCACTCCCAAGGACTGGAGCAAGAGGGGAAAGTGGTGACC AGGCACTGCCCATTAGCAGTGCCGGCAAAGCCAGCAGAACTGGGGCTGACAGCCTATCCC GCCCCCACTGGGGTCTCCAAGAGGCACAGCAAGGGGAGACAGGGCTGAGGACAGCTCCAC AGGGAGAGGACAGGCCTGGTAAAGGCCAGCTGGTGCCTAGCACCAAGGAGAGCTCAGGGC TCAGGTCAACTCCAAGGTCAGCTGGCTGCAGGCCCAGGCCTGCTGTGAACCAGGGACCAG AGGGAGCCAGGCAGCTGTGTACAGTGAGATAGGGGGTGGGGTGCTCTGTACAGGGGGCTG GTGGCTGTACAATTTTCTTTTGTAAAGTAGGAATGGGGGGGAGGTACTGGCTGCAAAATT CTGGCCTCTTTTGCCCCACTGCCCCCTGGCAATAAACTGTTTCTATGGGCCAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 627-823, - strand, RNAz p=0.912092 | |
| 928-1040, + strand, RNAz p=0.993577 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 627-823, - strand, RNAz p=0.912092 | |
| 928-1040, + strand, RNAz p=0.993577 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_182710, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-128, gnl|bosTau2|chr25 (22990944-22991071) | |
| 1-128, gnl|canFam2|chr6 (20126538-20126392) | |
| 1-128, gnl|danRer3|chr3 (27223743-27223598) | |
| 1-128, gnl|dasNov1|scaffold_3555 (35982-36130) | |
| 1-128, gnl|echTel1|scaffold_228628 (145-4) | |
| 1-128, gnl|fr1|chrUn (146941255-146941400) | |
| 1-128, gnl|hg17|chr16 (31048837-31048983) | |
| 1-128, gnl|Hg17|chr16 (31048853-31048980) | |
| 1-128, gnl|loxAfr1|scaffold_27247 (10214-10068) | |
| 1-128, gnl|mm7|chr7 (124020934-124021080) | |
| 1-128, gnl|Mm7|chr7 (124020950-124021077) | |
| 1-128, gnl|monDom2|scaffold_17 (9158648-9158794) | |
| 1-128, gnl|oryCun1|scaffold_211153 (80220-80074) | |
| 1-128, gnl|panTro1|chr18 (31840492-31840638) | |
| 1-128, gnl|rheMac2|chr20 (29223711-29223857) | |
| 1-128, gnl|rn3|chr1 (187359421-187359567) | |
| 1-128, gnl|tetNig1|chr3 (14025471-14025616) | |
| 1-128, gnl|xenTro1|scaffold_690 (342287-342431) | |
| 222-385, gnl|bosTau2|chr29 (38720798-38720634) | |
| 222-385, gnl|Hg17|chr11 (65242637-65242801) | |
| 222-385, gnl|Mm7|chr19 (5498795-5498631) | |
| 627-1040, gnl|bosTau2|chr16 (16912762-16912332) | |
| 627-1040, gnl|Hg17|chr11 (65243255-65243668) | |
| 627-1040, gnl|Mm7|chr19 (5498180-5497823) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-128, gnl|bosTau2|chr25 (22990944-22991071) | |
| 1-128, gnl|canFam2|chr6 (20126538-20126392) | |
| 1-128, gnl|danRer3|chr3 (27223743-27223598) | |
| 1-128, gnl|dasNov1|scaffold_3555 (35982-36130) | |
| 1-128, gnl|echTel1|scaffold_228628 (145-4) | |
| 1-128, gnl|fr1|chrUn (146941255-146941400) | |
| 1-128, gnl|hg17|chr16 (31048837-31048983) | |
| 1-128, gnl|Hg17|chr16 (31048853-31048980) | |
| 1-128, gnl|loxAfr1|scaffold_27247 (10214-10068) | |
| 1-128, gnl|mm7|chr7 (124020934-124021080) | |
| 1-128, gnl|Mm7|chr7 (124020950-124021077) | |
| 1-128, gnl|monDom2|scaffold_17 (9158648-9158794) | |
| 1-128, gnl|oryCun1|scaffold_211153 (80220-80074) | |
| 1-128, gnl|panTro1|chr18 (31840492-31840638) | |
| 1-128, gnl|rheMac2|chr20 (29223711-29223857) | |
| 1-128, gnl|rn3|chr1 (187359421-187359567) | |
| 1-128, gnl|tetNig1|chr3 (14025471-14025616) | |
| 1-128, gnl|xenTro1|scaffold_690 (342287-342431) | |
| 222-385, gnl|bosTau2|chr29 (38720798-38720634) | |
| 222-385, gnl|Hg17|chr11 (65242637-65242801) | |
| 222-385, gnl|Mm7|chr19 (5498795-5498631) | |
| 627-1040, gnl|bosTau2|chr16 (16912762-16912332) | |
| 627-1040, gnl|Hg17|chr11 (65243255-65243668) | |
| 627-1040, gnl|Mm7|chr19 (5498180-5497823) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| col (0.390016) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| cje (0.165235) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.390016) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| cje (0.165235) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |