Non-Coding RNA Search

Ss1.1-Pig4-TMW8040C15.3.5

Sequence:


               
               TCTGGAAGAGTCCTGGTGTATAAGAAGATCCAAGCCTGGTTGCAGTATGCCCGAAATCTG
GGATGTGGAAGATCCTGCTAATGCTGGGAAACCTCCCTTATGTAACATCTTGGTGAAGGA
GTCCAAGCCTCACTTCACCACTGTATTCCAGAACAGTGTTTACAAAGTCTTAGAAGTTAT
AGAGGAATGACCGCTGCCTACAGAGAAGTCCACCAGCAGATTAACCTCATTGTGGATTGT
CCTGGAGACCTGAGTCCTCAGGGACGGTTTCCAGTGCCCGCTCCGGGGAGCCACTGAAGA
GCTGTTCTCTTTCTGCCTTCTCACCAGAGCCCAAGGACAAGCCTGGTCTGGGGGAAGAAG
CATTAGCTTGCTTAGAGCAGACAGCTGCCGAGACAGCCTGGGCTGAGGAGTGTGCAGCCC
CCCGCCTGCCCAGAGCCCGCCTTTCCCAGGGAGCCTTCTCCTGGCCTGAGATTGTCAGTG
TCTTCAGGTGCCTGCCCCTCTTTCTCACTTGCTGGGTGACTTATTTCGTGGTCTTTTGCC
AGTTGCAGAAAACAGGGAAGCATCTGGGGAGTTGTGGATTAGGAGTGGAATTTGAGCGGT
GATGCAGAAATGCAGAAAAATGGCAAGTGGGCACTCGAGGCCAAGGAAGATTAAGAGTCA
CCACAGGCAGGAAGGGGGAAGTGTGTGTTCTGCTTTATTTGCCATTGTTTCTCACCTACA
TGTGTTTTGTACATCCAGCAGTTACAATTTTGAAAAACTTTAGTTTTAAAGTTATTCTTT
ATTCTTCCCACCTTTCAGTAATTCCCTTCCCAGGAAGTTCACATGTAATGGTTTGAAATT
TATATAGGAAAAGCATTAAAATACTATTTTAACTGTTTCATATGCTAGGAAAAGATAAAA
ATAGTCAAATTAGTTTTTTTTTTTTTCCAGAAGACGTCTTTTGTAGCAGTATTTATTAAT
GTAACTCCACCAGCAAGCTATGATTATATTTTAGGCCAGTCAGTTTAGAACAGAGGCCTT
GGGCTACACTGCACACTCAGCCTTGGTCACATCTGGTACAGCCGGTGCTGTAGATTATAT
ATATCTTTTATGGAAACATAGAGTAGTAGTAGGTTCGATATACACGACAAAACAGTATTA
AAGCTCAGTATTTTATGCATTTTTAGCATTTAAAAATATTTTTGCTTTAGTGTGAAGAAG
GTTAAGGATGGACTAGGTGGTGATAAAAATAGCTTTTGCTATGATAGTAAAAAAAACAAA
GTTGGGGCAGTATTTCTATAAAAAGATAAGCCTCTAAAAGTGCTTAGCAAAACAAGTGTA
GTGTTAAAATAGGACAATGATATTAAGGAGAAAATGAAAGGATGTGTCAAGAATAAAGTG
ATAATGCATAGGGGTATTGTATTTTTATGAATTTTATGCCAGTTGTTTACATGTACTATG
TATGTTAAATAAAAAAGGTCATGAAAAATAAAAAAATTCGATTCCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGGAAGAGTCCTGGTGTATAAGAAGATCCAAGCCTGGTTGCAGTATGCCCGAAATCTG
GGATGTGGAAGATCCTGCTAATGCTGGGAAACCTCCCTTATGTAACATCTTGGTGAAGGA
GTCCAAGCCTCACTTCACCACTGTATTCCAGAACAGTGTTTACAAAGTCTTAGAAGTTAT
AGAGGAATGACCGCTGCCTACAGAGAAGTCCACCAGCAGATTAACCTCATTGTGGATTGT
CCTGGAGACCTGAGTCCTCAGGGACGGTTTCCAGTGCCCGCTCCGGGGAGCCACTGAAGA
GCTGTTCTCTTTCTGCCTTCTCACCAGAGCCCAAGGACAAGCCTGGTCTGGGGGAAGAAG
CATTAGCTTGCTTAGAGCAGACAGCTGCCGAGACAGCCTGGGCTGAGGAGTGTGCAGCCC
CCCGCCTGCCCAGAGCCCGCCTTTCCCAGGGAGCCTTCTCCTGGCCTGAGATTGTCAGTG
TCTTCAGGTGCCTGCCCCTCTTTCTCACTTGCTGGGTGACTTATTTCGTGGTCTTTTGCC
AGTTGCAGAAAACAGGGAAGCATCTGGGGAGTTGTGGATTAGGAGTGGAATTTGAGCGGT
GATGCAGAAATGCAGAAAAATGGCAAGTGGGCACTCGAGGCCAAGGAAGATTAAGAGTCA
CCACAGGCAGGAAGGGGGAAGTGTGTGTTCTGCTTTATTTGCCATTGTTTCTCACCTACA
TGTGTTTTGTACATCCAGCAGTTACAATTTTGAAAAACTTTAGTTTTAAAGTTATTCTTT
ATTCTTCCCACCTTTCAGTAATTCCCTTCCCAGGAAGTTCACATGTAATGGTTTGAAATT
TATATAGGAAAAGCATTAAAATACTATTTTAACTGTTTCATATGCTAGGAAAAGATAAAA
ATAGTCAAATTAGTTTTTTTTTTTTTCCAGAAGACGTCTTTTGTAGCAGTATTTATTAAT
GTAACTCCACCAGCAAGCTATGATTATATTTTAGGCCAGTCAGTTTAGAACAGAGGCCTT
GGGCTACACTGCACACTCAGCCTTGGTCACATCTGGTACAGCCGGTGCTGTAGATTATAT
ATATCTTTTATGGAAACATAGAGTAGTAGTAGGTTCGATATACACGACAAAACAGTATTA
AAGCTCAGTATTTTATGCATTTTTAGCATTTAAAAATATTTTTGCTTTAGTGTGAAGAAG
GTTAAGGATGGACTAGGTGGTGATAAAAATAGCTTTTGCTATGATAGTAAAAAAAACAAA
GTTGGGGCAGTATTTCTATAAAAAGATAAGCCTCTAAAAGTGCTTAGCAAAACAAGTGTA
GTGTTAAAATAGGACAATGATATTAAGGAGAAAATGAAAGGATGTGTCAAGAATAAAGTG
ATAATGCATAGGGGTATTGTATTTTTATGAATTTTATGCCAGTTGTTTACATGTACTATG
TATGTTAAATAAAAAAGGTCATGAAAAATAAAAAAATTCGATTCCTGC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               666-1070, gnl|bosTau2|chr11 (21568562-21568974)
               

               
               666-1070, gnl|Hg17|chr7 (32658115-32658473)
               

               
               666-1070, gnl|Mm7|chr9 (24296350-24295950)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               666-1070, gnl|bosTau2|chr11 (21568562-21568974)
               

               
               666-1070, gnl|Hg17|chr7 (32658115-32658473)
               

               
               666-1070, gnl|Mm7|chr9 (24296350-24295950)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

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               cbr (2.04761)
               

               
               aor (0.390549)
               

               
               cmu (0.372787)
               

               
               spc (0.340097)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               ece (0.229305)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (2.04761)
               

               
               aor (0.390549)
               

               
               cmu (0.372787)
               

               
               spc (0.340097)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               ece (0.229305)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	666-1070, gnl\|bosTau2\|chr11 (21568562-21568974)
	666-1070, gnl\|Hg17\|chr7 (32658115-32658473)
	666-1070, gnl\|Mm7\|chr9 (24296350-24295950)

	cbr (2.04761)
	aor (0.390549)
	cmu (0.372787)
	spc (0.340097)
	sme (0.305437)
	lun (0.300978)
	cte (0.29274)
	lin (0.291206)
	ret (0.257467)
	thg (0.253582)
	ece (0.229305)
	gul (0.177588)
	mga (0.160205)
	spl (0.143184)
	csk (0.140746)
	ste (0.135208)
	ova (0.129132)
	sug (0.127291)
	ebs (0.118301)
	nbm (0.0993246)
	eje (0.0988338)