Non-Coding RNA Search

Ss1.1-Pig4-TMW8040C23.3

Sequence:


               
               GTAAAAAGAAGATTTCTCAAACATATCCAAAATTCTATAAACAATATGTTTCTATCTTTT
AATTTAGGAGGGGGTCTTAAAATATATAAATTTTGTTTTTGTGCCTGTCTATGACTGATA
CGACCAAATTTAACAGAGAAGTTAAATGATATCCTACAAAAATTATAGTTATGATATAAA
ATTATAGCACTTTAGTAAGAAAGGGGTATGATGCTATTTAACAGTATTTTATGTATGACT
TTTGCTACTATCCTATAATTTTTTTTTCTTAATTTCTTTCCTGTGTTTACTGGGGTTATT
TTCTAATTAAAATAATCCTTCTAGATAATAGATACTACCCAGTATTTATCACAACACATG
ACTTGTGTTGACTCACAGAACTGAATTTCTTAAGATGATGTGTCTTACTAAAAAAGAAGA
GGAAAAAAAAAAAACCTATATATTTTTTTACTTTAAAACAATGGGACTGGGAATACTGAT
AGGAATGCTCCTTATTCAGTTTTAGGGATCAGGCTTGTTAAATACAATACTATGGTTTTA
GAAGTCTGTACTAGGAATATTTTTCAAATACATTTTTTATATTTTTCAGATGTAATGCAG
TACATTTTTATTTGAACAATAAAAAAGAAAACATAATAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAAAAAGAAGATTTCTCAAACATATCCAAAATTCTATAAACAATATGTTTCTATCTTTT
AATTTAGGAGGGGGTCTTAAAATATATAAATTTTGTTTTTGTGCCTGTCTATGACTGATA
CGACCAAATTTAACAGAGAAGTTAAATGATATCCTACAAAAATTATAGTTATGATATAAA
ATTATAGCACTTTAGTAAGAAAGGGGTATGATGCTATTTAACAGTATTTTATGTATGACT
TTTGCTACTATCCTATAATTTTTTTTTCTTAATTTCTTTCCTGTGTTTACTGGGGTTATT
TTCTAATTAAAATAATCCTTCTAGATAATAGATACTACCCAGTATTTATCACAACACATG
ACTTGTGTTGACTCACAGAACTGAATTTCTTAAGATGATGTGTCTTACTAAAAAAGAAGA
GGAAAAAAAAAAAACCTATATATTTTTTTACTTTAAAACAATGGGACTGGGAATACTGAT
AGGAATGCTCCTTATTCAGTTTTAGGGATCAGGCTTGTTAAATACAATACTATGGTTTTA
GAAGTCTGTACTAGGAATATTTTTCAAATACATTTTTTATATTTTTCAGATGTAATGCAG
TACATTTTTATTTGAACAATAAAAAAGAAAACATAATAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               268-426, - strand, RNAz p=0.999158

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               268-426, - strand, RNAz p=0.999158

Similar Transcript(s): 2 entry(ies)

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Similar Transcript(s): 2 entry(ies)

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               274-392, ot86d06.s1 Soares_total_fetus_Nb2HF8_9w Homo sapiens cDNA clone 
(gb|AI016364.1|), blast E-value=2e-16, identity=84.87% 
               

               
               268-415, 010125BEMN053861HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY191549.1|), blast E-value=9e-37, identity=89.26%

Similar Transcript(s): 2 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               274-392, ot86d06.s1 Soares_total_fetus_Nb2HF8_9w Homo sapiens cDNA clone 
(gb|AI016364.1|), blast E-value=2e-16, identity=84.87% 
               

               
               268-415, 010125BEMN053861HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY191549.1|), blast E-value=9e-37, identity=89.26%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-584, gnl|bosTau2|chr6 (50057536-50056963)
               

               
               6-584, gnl|Hg17|chr4 (74305357-74304779)
               

               
               6-584, gnl|Mm7|chr5 (90198851-90198335)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-584, gnl|bosTau2|chr6 (50057536-50056963)
               

               
               6-584, gnl|Hg17|chr4 (74305357-74304779)
               

               
               6-584, gnl|Mm7|chr5 (90198851-90198335)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               bfe (0.149858)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.149858)

	274-392, ot86d06.s1 Soares_total_fetus_Nb2HF8_9w Homo sapiens cDNA clone (gb\|AI016364.1\|), blast E-value=2e-16, identity=84.87%
	268-415, 010125BEMN053861HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY191549.1\|), blast E-value=9e-37, identity=89.26%

	6-584, gnl\|bosTau2\|chr6 (50057536-50056963)
	6-584, gnl\|Hg17\|chr4 (74305357-74304779)
	6-584, gnl\|Mm7\|chr5 (90198851-90198335)