Non-Coding RNA Search

Ss1.1-Pig4-TMW8040D05.3

Sequence:


               
               GGCAACACCAACAACAGCAACAGCAAGAAGAAAAGCCCAGCCAGCACCTTCGCCCTCTCC
AGCCAGGTACCTGATGTGATGGTGGTGGGGGAGCCCACCCTGATGGGCGGGGAGTTCGGG
GACGAGGACGAGAGGCTCATCACCCGGCTGGAGAACACCCAGTTTGACGCGGCCAACGGC
ATTGACGACGAGGACAGCTTTAACAACTCCCCCGCCCTGGGCGCCAACAGCCCCTGGAAC
AGCAAGCCTCCATCCAGCCAAGAGAGCAAATCGGAGAACCCCACGTCACAGGCCTCCCAG
TAAAGGCCTCGCCACGGCCACCCAGCACTCTGCCTGCCTGCCCCACTCCTCGCAGCGCCA
GGGAGCAGAAGACAGAATGAAGAGACTGAGCATCTAAAATGGGCAGCCTCATCCACCCAC
TTCAGGGAGGACCTGGACTCGCTGGGGGCAGGTGCCAAGATTTGCCCCCCACTGGCCCTG
GGCTGGGGCTGGCCTCTGCAGAACCTTTGGGAGGAAGGGGGTACTCCCGTGGATGCCTAC
GTGGACCTGGGCCTCTGAGAAATGTCCTGACCACCCCCCAGGGCATTTGCCTCCATCCTC
ATCCCGGGTTCTGGGTTCCCCCACCCTCCTGACTCCATCCCCTTCAAGCCTGGGGTTGTC
TGTACCCACAGCCCTTAGGGACTTACAGTTGTGGGGTTTGGTTGAATGCCCCTGTCCCAC
ACCCTCCCCTTAGGTGGCTGGTAGTAGAGGGATAAAGCTCTGGACTCCTCCCTCTGCCAC
CTATCCCAGCTCCAAGTTTTTTTTTTTTAAATAATATTATTAAAAATGTAAGTTTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAACACCAACAACAGCAACAGCAAGAAGAAAAGCCCAGCCAGCACCTTCGCCCTCTCC
AGCCAGGTACCTGATGTGATGGTGGTGGGGGAGCCCACCCTGATGGGCGGGGAGTTCGGG
GACGAGGACGAGAGGCTCATCACCCGGCTGGAGAACACCCAGTTTGACGCGGCCAACGGC
ATTGACGACGAGGACAGCTTTAACAACTCCCCCGCCCTGGGCGCCAACAGCCCCTGGAAC
AGCAAGCCTCCATCCAGCCAAGAGAGCAAATCGGAGAACCCCACGTCACAGGCCTCCCAG
TAAAGGCCTCGCCACGGCCACCCAGCACTCTGCCTGCCTGCCCCACTCCTCGCAGCGCCA
GGGAGCAGAAGACAGAATGAAGAGACTGAGCATCTAAAATGGGCAGCCTCATCCACCCAC
TTCAGGGAGGACCTGGACTCGCTGGGGGCAGGTGCCAAGATTTGCCCCCCACTGGCCCTG
GGCTGGGGCTGGCCTCTGCAGAACCTTTGGGAGGAAGGGGGTACTCCCGTGGATGCCTAC
GTGGACCTGGGCCTCTGAGAAATGTCCTGACCACCCCCCAGGGCATTTGCCTCCATCCTC
ATCCCGGGTTCTGGGTTCCCCCACCCTCCTGACTCCATCCCCTTCAAGCCTGGGGTTGTC
TGTACCCACAGCCCTTAGGGACTTACAGTTGTGGGGTTTGGTTGAATGCCCCTGTCCCAC
ACCCTCCCCTTAGGTGGCTGGTAGTAGAGGGATAAAGCTCTGGACTCCTCCCTCTGCCAC
CTATCCCAGCTCCAAGTTTTTTTTTTTTAAATAATATTATTAAAAATGTAAGTTTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47196191|emb|CAF87381.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47196191|emb|CAF87381.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               391-507, - strand, RNAz p=0.939978
               

               
               547-846, - strand, RNAz p=0.997829

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               391-507, - strand, RNAz p=0.939978
               

               
               547-846, - strand, RNAz p=0.997829

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               73-846, gnl|bosTau2|chr26 (14390095-14390880)
               

               
               73-846, gnl|Hg17|chr10 (103858070-103857307)
               

               
               73-846, gnl|Mm7|chr19 (45929975-45929226)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-846, gnl|bosTau2|chr26 (14390095-14390880)
               

               
               73-846, gnl|Hg17|chr10 (103858070-103857307)
               

               
               73-846, gnl|Mm7|chr19 (45929975-45929226)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               med (0.348756)
               

               
               csp (0.322373)
               

               
               fce (0.271592)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.348756)
               

               
               csp (0.322373)
               

               
               fce (0.271592)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	391-507, - strand, RNAz p=0.939978
	547-846, - strand, RNAz p=0.997829

	73-846, gnl\|bosTau2\|chr26 (14390095-14390880)
	73-846, gnl\|Hg17\|chr10 (103858070-103857307)
	73-846, gnl\|Mm7\|chr19 (45929975-45929226)

	med (0.348756)
	csp (0.322373)
	fce (0.271592)
	nlu (0.191681)
	mcp (0.170648)
	cki (0.165235)
	nco (0.161734)
	eli (0.151814)
	lnt (0.142308)
	nca (0.136874)
	pla (0.133672)
	ute (0.132784)
	ese (0.126502)
	eep (0.122564)
	ecc (0.115035)
	nbm (0.0993246)