Non-Coding RNA Search

Ss1.1-Pig4-TMW8040D09.3

Sequence:


               
               AGGTGGAGCTGGCGCTGTGGGACACAGCGGGCCAGGAGGACTACGATCGCCTGCGGCCGC
TCTCCTACCCGGACACCGACGTGATCCTTATGTGCTTCTCGGTGGACAGCCCGGATTCCC
TGGAGAACATCCCCGAGAAGTGGGTGCCCGAGGTGAAGCACTTCTGCCCCAACGTGCCCA
TCATCCTGGTGGCCAACAAGAAAGACCTGCGCAGCGACGAGCACGTCCGCACTGAGCTGG
CCCGCATGAAGCAGGAACCCGTGCGCACGGATGACGGCCGCGCCATGGCCGTGCGCATCC
AAGCCTACGACTACCTCGAGTGCTCTGCCAAGACCAAGGAGGGCGTGCGCGAGGTCTTCG
AGACGGCCACGCGAGCCGCGCTGCAGAAACGCTACGGCTCCCAGAACGGCTGCATCAACT
GCTGCAAGGTGCTATGAGGGCCGCGCCCGCCTGCCTGCCCCTGCGGGCACGGCTCCCCCA
CCCCGGCCGGTCCCCCACGAGGCCGGAGAAGGGAGACCCGCGCCCCCCCCACGGACCCCA
CCGGACGGCCTGGCGTCTGCCCTCCGGACCCGCAGCCGTGGCCTGGCGGCTGTGGCTCTG
GCGCCGGGAATCGGCGCGGTAGGCACCGGGCGCCCCCTTTCCAAGTGTCTGTGTGCGTCC
CGCTGTGTTGCACAGGCCTGGGCGCCCCGCTGAGTGCCAAGGGATCCCCGAAGACCCTGT
TCTGAAGAGCCAAGCCTCTTCGGAGGGTGTGGCTGTGTGTATGTTCAACTCCCCCCGCCC
CGTTTTTGCCCCACGCCCGCCTCTGCTACCCCGAGGCGAGCTTGGCCCCGGGGTGCGGCC
GCGCCCCATCATCAGATGTTCTCCCATAACCAGCGAGCGCCTGCTATGCCCCTGTCTGTA
ACATAGACCACGGGAACTGCGGGAGGGGAGGGCTGGGGTGGATGGGGTGTTATATAAATA
TAGATATAATTTTATTTTCGGAGGTAGGATGGTGTTATTTAATGGTGGCGGTGGGTGGAG
TGACAGGACTTGAGAACAGCTCCGGCCCAGCCTGGGTCAGGCGTCCATCCAGGCACGAAC
AAGACTTGGCCATCTTTCCAACTCCTGGGAAAGACATTTGCAACTAACTGACTTGGGGCT
GAGAGGACACAGCTTCCAGACTCATGTCTCCTGCGGGCCAGCCAGGGAGAACCCCTCATC
AGCCACAGGCAGGAGGAGGGAAAGTGTGCTGCAGGTTGTTTTTTTGCCATAAGCGAACTT
TGTGCCTGTCCTACAAGTGAAATTTGTTCAGTCCAAGAAACTGATGTTATTTGATTTATT
TAAAGGCGAAAACTTGGGTTTTTTTTTTTTTTTTGGAAAGAATTCTTTGCACAATTGTTT
CATTGTTTGACACTTAATGCACTTGTCATTTGCATAAGACAGTAGCATTCTGACCACACT
TGTACGCTGTAACCTCATCTACTTCTGATGTTTTTAAAAAAATGATAACTTTTAAAAATC
AAGGAGAAGAAGAAACCACTAATTTTCTTTTCTTGAAAAAAGTGGCAACACTGTTCTGTT
TTGCGATTTTATTTGTGCAGGTGTGCACTCTATTTTGATAAAGGGCAGTAACAAGTATTA
GGGCCTATCTAAAACCTTCCCCCCCCCCACAAGGCAGTCTCTAAAGCTGTGTGAAATTTT
CTCTGCATCTCTGTACAGAGAAGGAACCTGCCCCTCGTGTCTCCTTTCTCCCTTCCCTTC
CCCACCCAGTGGTACTTCTACTAAATTGTTGTCTTGTTTTTTATTTTTTAAATAAACTGA
CAAATGACAAAGTGGTGAGCTTATGATGTTTACATAAAAGTTCTATAAGCTGTGTATACA
GTTTTTTATGTAAAATATTAAAAGACTATGATGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTGGAGCTGGCGCTGTGGGACACAGCGGGCCAGGAGGACTACGATCGCCTGCGGCCGC
TCTCCTACCCGGACACCGACGTGATCCTTATGTGCTTCTCGGTGGACAGCCCGGATTCCC
TGGAGAACATCCCCGAGAAGTGGGTGCCCGAGGTGAAGCACTTCTGCCCCAACGTGCCCA
TCATCCTGGTGGCCAACAAGAAAGACCTGCGCAGCGACGAGCACGTCCGCACTGAGCTGG
CCCGCATGAAGCAGGAACCCGTGCGCACGGATGACGGCCGCGCCATGGCCGTGCGCATCC
AAGCCTACGACTACCTCGAGTGCTCTGCCAAGACCAAGGAGGGCGTGCGCGAGGTCTTCG
AGACGGCCACGCGAGCCGCGCTGCAGAAACGCTACGGCTCCCAGAACGGCTGCATCAACT
GCTGCAAGGTGCTATGAGGGCCGCGCCCGCCTGCCTGCCCCTGCGGGCACGGCTCCCCCA
CCCCGGCCGGTCCCCCACGAGGCCGGAGAAGGGAGACCCGCGCCCCCCCCACGGACCCCA
CCGGACGGCCTGGCGTCTGCCCTCCGGACCCGCAGCCGTGGCCTGGCGGCTGTGGCTCTG
GCGCCGGGAATCGGCGCGGTAGGCACCGGGCGCCCCCTTTCCAAGTGTCTGTGTGCGTCC
CGCTGTGTTGCACAGGCCTGGGCGCCCCGCTGAGTGCCAAGGGATCCCCGAAGACCCTGT
TCTGAAGAGCCAAGCCTCTTCGGAGGGTGTGGCTGTGTGTATGTTCAACTCCCCCCGCCC
CGTTTTTGCCCCACGCCCGCCTCTGCTACCCCGAGGCGAGCTTGGCCCCGGGGTGCGGCC
GCGCCCCATCATCAGATGTTCTCCCATAACCAGCGAGCGCCTGCTATGCCCCTGTCTGTA
ACATAGACCACGGGAACTGCGGGAGGGGAGGGCTGGGGTGGATGGGGTGTTATATAAATA
TAGATATAATTTTATTTTCGGAGGTAGGATGGTGTTATTTAATGGTGGCGGTGGGTGGAG
TGACAGGACTTGAGAACAGCTCCGGCCCAGCCTGGGTCAGGCGTCCATCCAGGCACGAAC
AAGACTTGGCCATCTTTCCAACTCCTGGGAAAGACATTTGCAACTAACTGACTTGGGGCT
GAGAGGACACAGCTTCCAGACTCATGTCTCCTGCGGGCCAGCCAGGGAGAACCCCTCATC
AGCCACAGGCAGGAGGAGGGAAAGTGTGCTGCAGGTTGTTTTTTTGCCATAAGCGAACTT
TGTGCCTGTCCTACAAGTGAAATTTGTTCAGTCCAAGAAACTGATGTTATTTGATTTATT
TAAAGGCGAAAACTTGGGTTTTTTTTTTTTTTTTGGAAAGAATTCTTTGCACAATTGTTT
CATTGTTTGACACTTAATGCACTTGTCATTTGCATAAGACAGTAGCATTCTGACCACACT
TGTACGCTGTAACCTCATCTACTTCTGATGTTTTTAAAAAAATGATAACTTTTAAAAATC
AAGGAGAAGAAGAAACCACTAATTTTCTTTTCTTGAAAAAAGTGGCAACACTGTTCTGTT
TTGCGATTTTATTTGTGCAGGTGTGCACTCTATTTTGATAAAGGGCAGTAACAAGTATTA
GGGCCTATCTAAAACCTTCCCCCCCCCCACAAGGCAGTCTCTAAAGCTGTGTGAAATTTT
CTCTGCATCTCTGTACAGAGAAGGAACCTGCCCCTCGTGTCTCCTTTCTCCCTTCCCTTC
CCCACCCAGTGGTACTTCTACTAAATTGTTGTCTTGTTTTTTATTTTTTAAATAAACTGA
CAAATGACAAAGTGGTGAGCTTATGATGTTTACATAAAAGTTCTATAAGCTGTGTATACA
GTTTTTTATGTAAAATATTAAAAGACTATGATGATG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|37777307|tpg|DAA01912.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37777307|tpg|DAA01912.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1626-1731, - strand, RNAz p=0.975567

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1626-1731, - strand, RNAz p=0.975567

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1896, gnl|bosTau2|chr11 (61538252-61540165)
               

               
               1-1896, gnl|Hg17|chr2 (20569009-20570822)
               

               
               1-1896, gnl|Mm7|chr12 (8525511-8523707)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1896, gnl|bosTau2|chr11 (61538252-61540165)
               

               
               1-1896, gnl|Hg17|chr2 (20569009-20570822)
               

               
               1-1896, gnl|Mm7|chr12 (8525511-8523707)

Expressed library(ies): 58 entry(ies)

More info

Expressed library(ies): 58 entry(ies)

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               gul (3.37418)
               

               
               liv (2.48683)
               

               
               aor (2.34329)
               

               
               pla (1.60406)
               

               
               pro (1.02407)
               

               
               tra (0.984737)
               

               
               fbs (0.876732)
               

               
               lin (0.873617)
               

               
               che (0.817884)
               

               
               sug (0.763747)
               

               
               bla (0.746083)
               

               
               mgp (0.692042)
               

               
               spc (0.680195)
               

               
               ova (0.516529)
               

               
               fhi (0.508733)
               

               
               cbe (0.478469)
               

               
               pan (0.471921)
               

               
               cli (0.458435)
               

               
               spl (0.429553)
               

               
               csk (0.422238)
               

               
               cst (0.420109)
               

               
               hea (0.408998)
               

               
               cov (0.396458)
               

               
               fcc (0.39557)
               

               
               ret (0.3862)
               

               
               clu (0.358938)
               

               
               ebs (0.354904)
               

               
               mcp (0.341297)
               

               
               eye (0.341006)
               

               
               mga (0.32041)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               ste (0.270416)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)

Expressed library(ies): 58 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (3.37418)
               

               
               liv (2.48683)
               

               
               aor (2.34329)
               

               
               pla (1.60406)
               

               
               pro (1.02407)
               

               
               tra (0.984737)
               

               
               fbs (0.876732)
               

               
               lin (0.873617)
               

               
               che (0.817884)
               

               
               sug (0.763747)
               

               
               bla (0.746083)
               

               
               mgp (0.692042)
               

               
               spc (0.680195)
               

               
               ova (0.516529)
               

               
               fhi (0.508733)
               

               
               cbe (0.478469)
               

               
               pan (0.471921)
               

               
               cli (0.458435)
               

               
               spl (0.429553)
               

               
               csk (0.422238)
               

               
               cst (0.420109)
               

               
               hea (0.408998)
               

               
               cov (0.396458)
               

               
               fcc (0.39557)
               

               
               ret (0.3862)
               

               
               clu (0.358938)
               

               
               ebs (0.354904)
               

               
               mcp (0.341297)
               

               
               eye (0.341006)
               

               
               mga (0.32041)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               ste (0.270416)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)

	1-1896, gnl\|bosTau2\|chr11 (61538252-61540165)
	1-1896, gnl\|Hg17\|chr2 (20569009-20570822)
	1-1896, gnl\|Mm7\|chr12 (8525511-8523707)

	gul (3.37418)
	liv (2.48683)
	aor (2.34329)
	pla (1.60406)
	pro (1.02407)
	tra (0.984737)
	fbs (0.876732)
	lin (0.873617)
	che (0.817884)
	sug (0.763747)
	bla (0.746083)
	mgp (0.692042)
	spc (0.680195)
	ova (0.516529)
	fhi (0.508733)
	cbe (0.478469)
	pan (0.471921)
	cli (0.458435)
	spl (0.429553)
	csk (0.422238)
	cst (0.420109)
	hea (0.408998)
	cov (0.396458)
	fcc (0.39557)
	ret (0.3862)
	clu (0.358938)
	ebs (0.354904)
	mcp (0.341297)
	eye (0.341006)
	mga (0.32041)
	lun (0.300978)
	fat (0.294855)
	ste (0.270416)
	cly (0.241284)
	eru (0.240096)
	ecc (0.23007)
	jca (0.22792)
	nms (0.213858)
	ldo (0.194005)
	nlu (0.191681)
	sto (0.179824)
	ton (0.1755)
	rec (0.17307)
	duo (0.172801)
	cut (0.169924)
	cki (0.165235)
	csp (0.161186)
	fco (0.157208)
	tbr (0.154178)
	cag (0.151194)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	hyp (0.142837)
	ssp (0.13552)
	nmm (0.132802)
	ese (0.126502)
	nbm (0.0993246)