Ss1.1-Pig4-TMW8040D12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCCGACTTGCCAGCAGAAGAAAAAGAGCAGCTGCTTCACAATGATGAGTACCAGGAGAC GATGGTGGAGTCCACTTTTATGTACCTGACGCTGGACCTCCCTACTGCCCCCCTGTACAA GGACGAGAAGGAGCAGCTCATTATCCCCCAAGTGCCCCTCTTCAACATCCTGGCCAAGTT CAACGGCATCACTGAGAAGGAATATAAGACTTACAAGGAGAACTTTCTGAAGCGCTTCCA GCTCACCAAGCTGCCTCCATATCTCATCTTTTGTATTAAGAGATTCACTAAGAACAATTT CTTTGTGGAGAAGAATCCAACTATTGTCAACTTTCCTATTACGAATGTGGATCTGAGAGA ATACTTGTCGGAAGAGGTGCAGGCAGTGCACAAGAACACCACCTATGACCTCATTGCCAA CATTGTGCACGACGGCAAGCCCTCTGAGGGCTCCTACCGGATCCACGTGCTTCATCACGG GACAGGCAAATGGTATGAATTACAAGACCTCCAGGTGACGGACATCCTTCCCCAGATGAT CACACTGTCAGAGGCTTACATCCAGATTTGGAAGAGGCGAGATAATGATGAAACCAACCA GCAGGGGGCGTGAGGAGGCATTGAGAACTTTGCTTTTTTCCCTGGGGCTTTGGCTGAAGA TGTAAATGAGAAGACTGAACCCAGGTTGAGGGCATGTCCCTTGAGCCAGGCCCGCTTTCT GTGCTCTGGTTCATACCAGAGCCTCAGGGCTTCGTCTGCCTAGGATGGCCCTGGGCTGTC ACCCAGCTGTTCTTTGATCAGTTTATTGGCGCTGGAGGCCCCTTCCTCCTTCCTGTCTGG CTCCCCTCTAGCAGGGCCAAACTCTTTTACAGATGTATGTAATTTATTTCTGAGTAGCAG AGAGTAGCTGAAGGACAAGATAGTTTTCTTCTAAGCATCAAAGCTTCAGAATCCTAGAAA TAAGAGCTTGAAGCCAGTAACACTCTTCTTCCATAGTAGATAAATAGTTTTCCTGGGGTC CTCTTCATTTCCTGATGTGTGTTTTGGGATGAATGAAATATTTTCTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCCGACTTGCCAGCAGAAGAAAAAGAGCAGCTGCTTCACAATGATGAGTACCAGGAGAC GATGGTGGAGTCCACTTTTATGTACCTGACGCTGGACCTCCCTACTGCCCCCCTGTACAA GGACGAGAAGGAGCAGCTCATTATCCCCCAAGTGCCCCTCTTCAACATCCTGGCCAAGTT CAACGGCATCACTGAGAAGGAATATAAGACTTACAAGGAGAACTTTCTGAAGCGCTTCCA GCTCACCAAGCTGCCTCCATATCTCATCTTTTGTATTAAGAGATTCACTAAGAACAATTT CTTTGTGGAGAAGAATCCAACTATTGTCAACTTTCCTATTACGAATGTGGATCTGAGAGA ATACTTGTCGGAAGAGGTGCAGGCAGTGCACAAGAACACCACCTATGACCTCATTGCCAA CATTGTGCACGACGGCAAGCCCTCTGAGGGCTCCTACCGGATCCACGTGCTTCATCACGG GACAGGCAAATGGTATGAATTACAAGACCTCCAGGTGACGGACATCCTTCCCCAGATGAT CACACTGTCAGAGGCTTACATCCAGATTTGGAAGAGGCGAGATAATGATGAAACCAACCA GCAGGGGGCGTGAGGAGGCATTGAGAACTTTGCTTTTTTCCCTGGGGCTTTGGCTGAAGA TGTAAATGAGAAGACTGAACCCAGGTTGAGGGCATGTCCCTTGAGCCAGGCCCGCTTTCT GTGCTCTGGTTCATACCAGAGCCTCAGGGCTTCGTCTGCCTAGGATGGCCCTGGGCTGTC ACCCAGCTGTTCTTTGATCAGTTTATTGGCGCTGGAGGCCCCTTCCTCCTTCCTGTCTGG CTCCCCTCTAGCAGGGCCAAACTCTTTTACAGATGTATGTAATTTATTTCTGAGTAGCAG AGAGTAGCTGAAGGACAAGATAGTTTTCTTCTAAGCATCAAAGCTTCAGAATCCTAGAAA TAAGAGCTTGAAGCCAGTAACACTCTTCTTCCATAGTAGATAAATAGTTTTCCTGGGGTC CTCTTCATTTCCTGATGTGTGTTTTGGGATGAATGAAATATTTTCTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 635-786, + strand, RNAz p=0.956613 | |
| 673-818, + strand, RNAz p=0.955381 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 635-786, + strand, RNAz p=0.956613 | |
| 673-818, + strand, RNAz p=0.955381 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC067273, + |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 10-200, gnl|bosTau2|chr11 (34461080-34460890) | |
| 10-200, gnl|canFam2|chr17 (42516938-42516719) | |
| 10-200, gnl|danRer3|chr15 (19017344-19017543) | |
| 10-200, gnl|echTel1|scaffold_253971 (1147-1366) | |
| 10-200, gnl|fr1|chrUn (72603247-72603446) | |
| 10-200, gnl|hg17|chr2 (85777974-85778194) | |
| 10-200, gnl|Hg17|chr2 (85777983-85778173) | |
| 10-200, gnl|loxAfr1|scaffold_40596 (10759-10979) | |
| 10-200, gnl|mm7|chr6 (72346649-72346433) | |
| 10-200, gnl|Mm7|chr6 (72346638-72346448) | |
| 10-200, gnl|monDom2|scaffold_68 (9553868-9554088) | |
| 10-200, gnl|oryCun1|scaffold_48804 (2019-2239) | |
| 10-200, gnl|panTro1|chr12 (88652697-88652917) | |
| 10-200, gnl|rheMac2|chr13 (86212082-86212302) | |
| 10-200, gnl|rn3|chr4 (105877195-105876979) | |
| 10-200, gnl|tetNig1|chr12 (6862066-6861874) | |
| 10-200, gnl|xenTro1|scaffold_217 (666459-666660) | |
| 344-482, gnl|bosTau2|chr11 (34447720-34447582) | |
| 344-482, gnl|canFam2|chr17 (42505733-42505594) | |
| 344-482, gnl|danRer3|chr15 (19020019-19020163) | |
| 344-482, gnl|dasNov1|scaffold_54351 (3979-3830) | |
| 344-482, gnl|echTel1|scaffold_253971 (6571-6717) | |
| 344-482, gnl|fr1|chrUn (72603822-72603971) | |
| 344-482, gnl|hg17|chr2 (85783728-85783877) | |
| 344-482, gnl|Hg17|chr2 (85783730-85783868) | |
| 344-482, gnl|loxAfr1|scaffold_70094 (2990-3138) | |
| 344-482, gnl|mm7|chr6 (72339325-72339182) | |
| 344-482, gnl|Mm7|chr6 (72339321-72339183) | |
| 344-482, gnl|monDom2|scaffold_68 (9561926-9562070) | |
| 344-482, gnl|oryCun1|scaffold_200152 (37820-37969) | |
| 344-482, gnl|panTro1|chr12 (88658469-88658618) | |
| 344-482, gnl|rheMac2|chr13 (86218583-86218732) | |
| 344-482, gnl|rn3|chr4 (105870515-105870358) | |
| 344-482, gnl|tetNig1|chr12 (6861535-6861386) | |
| 344-482, gnl|xenTro1|scaffold_217 (667409-667552) | |
| 556-1065, gnl|bosTau2|chr11 (34444828-34444346) | |
| 556-1065, gnl|canFam2|chr17 (42501736-42501387) | |
| 556-1065, gnl|Hg17|chr2 (85787532-85788050) | |
| 556-1065, gnl|hg17|chr4 (126911335-126911685) | |
| 556-1065, gnl|loxAfr1|scaffold_70094 (5848-6210) | |
| 556-1065, gnl|mm7|chr6 (72337029-72336719) | |
| 556-1065, gnl|Mm7|chr6 (72337180-72336711) | |
| 556-1065, gnl|oryCun1|scaffold_187597 (57159-56815) | |
| 556-1065, gnl|panTro1|chr3 (143766393-143766743) | |
| 556-1065, gnl|rheMac2|chr5 (117965101-117965450) | |
| 556-1065, gnl|rn3|chr4 (105868776-105868466) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 10-200, gnl|bosTau2|chr11 (34461080-34460890) | |
| 10-200, gnl|canFam2|chr17 (42516938-42516719) | |
| 10-200, gnl|danRer3|chr15 (19017344-19017543) | |
| 10-200, gnl|echTel1|scaffold_253971 (1147-1366) | |
| 10-200, gnl|fr1|chrUn (72603247-72603446) | |
| 10-200, gnl|hg17|chr2 (85777974-85778194) | |
| 10-200, gnl|Hg17|chr2 (85777983-85778173) | |
| 10-200, gnl|loxAfr1|scaffold_40596 (10759-10979) | |
| 10-200, gnl|mm7|chr6 (72346649-72346433) | |
| 10-200, gnl|Mm7|chr6 (72346638-72346448) | |
| 10-200, gnl|monDom2|scaffold_68 (9553868-9554088) | |
| 10-200, gnl|oryCun1|scaffold_48804 (2019-2239) | |
| 10-200, gnl|panTro1|chr12 (88652697-88652917) | |
| 10-200, gnl|rheMac2|chr13 (86212082-86212302) | |
| 10-200, gnl|rn3|chr4 (105877195-105876979) | |
| 10-200, gnl|tetNig1|chr12 (6862066-6861874) | |
| 10-200, gnl|xenTro1|scaffold_217 (666459-666660) | |
| 344-482, gnl|bosTau2|chr11 (34447720-34447582) | |
| 344-482, gnl|canFam2|chr17 (42505733-42505594) | |
| 344-482, gnl|danRer3|chr15 (19020019-19020163) | |
| 344-482, gnl|dasNov1|scaffold_54351 (3979-3830) | |
| 344-482, gnl|echTel1|scaffold_253971 (6571-6717) | |
| 344-482, gnl|fr1|chrUn (72603822-72603971) | |
| 344-482, gnl|hg17|chr2 (85783728-85783877) | |
| 344-482, gnl|Hg17|chr2 (85783730-85783868) | |
| 344-482, gnl|loxAfr1|scaffold_70094 (2990-3138) | |
| 344-482, gnl|mm7|chr6 (72339325-72339182) | |
| 344-482, gnl|Mm7|chr6 (72339321-72339183) | |
| 344-482, gnl|monDom2|scaffold_68 (9561926-9562070) | |
| 344-482, gnl|oryCun1|scaffold_200152 (37820-37969) | |
| 344-482, gnl|panTro1|chr12 (88658469-88658618) | |
| 344-482, gnl|rheMac2|chr13 (86218583-86218732) | |
| 344-482, gnl|rn3|chr4 (105870515-105870358) | |
| 344-482, gnl|tetNig1|chr12 (6861535-6861386) | |
| 344-482, gnl|xenTro1|scaffold_217 (667409-667552) | |
| 556-1065, gnl|bosTau2|chr11 (34444828-34444346) | |
| 556-1065, gnl|canFam2|chr17 (42501736-42501387) | |
| 556-1065, gnl|Hg17|chr2 (85787532-85788050) | |
| 556-1065, gnl|hg17|chr4 (126911335-126911685) | |
| 556-1065, gnl|loxAfr1|scaffold_70094 (5848-6210) | |
| 556-1065, gnl|mm7|chr6 (72337029-72336719) | |
| 556-1065, gnl|Mm7|chr6 (72337180-72336711) | |
| 556-1065, gnl|oryCun1|scaffold_187597 (57159-56815) | |
| 556-1065, gnl|panTro1|chr3 (143766393-143766743) | |
| 556-1065, gnl|rheMac2|chr5 (117965101-117965450) | |
| 556-1065, gnl|rn3|chr4 (105868776-105868466) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| ssp (0.271039) | |
| sto (0.179824) | |
| fty (0.17584) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| che (0.136314) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (0.271039) | |
| sto (0.179824) | |
| fty (0.17584) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| che (0.136314) | |
| ebs (0.118301) | |
| cty (0.10408) |