Non-Coding RNA Search

Ss1.1-Pig4-TMW8040D16.3

Sequence:


               
               GACAAAGCACTTCTCAACATATCCCCAAACTCCCTCCAAAAACTTACAAAAGGGAGCACA
CACACCCATCCATGCACAGAGATGGACCACCACTGTTGGAGAACGCCCATTCTTCCTGAA
CTCCTCTGTACCGGGATGTCCATTTTCTTCACCCCAAATCCATTGCTGGCAATGGATGCA
CTGAATGTGCCAGCACTGAGGAGTTAAAAATGAGAGCTCCAAACACTAATGACTCTACTT
CAAGATGCAGTATAAGACAATGAACTTAACCGAGACAAAATTATAAAATGAAAATGGTGT
TTGTTTAGAATATGGAAAGACTGATCTAGAGGAAGTGGACAACTGATTGCACCTGAAAAT
CAAGTAAAGGGACTTTTTCCAGCCAGTAGGCAGGAGTCCTCTTTTTGTGAAGTGATCTTT
CTCATTAAAGGGATGGAAAACACAGTCTAGTGTCCAACAGGCCCACATGATGACAGTTTT
TGTAATTCAAAATATTATGCACTTTTTAAAAAATCTTAAACAGGGATCTTCAAACCCTCC
TTTGTTTTCCTTTGCTTTTACTCGTCCTACTTTAGAATATTTTCTTAAAAATCATTCAGA
GGACTGTGAGGAAAGGCTGTGGTACCTGACTTGTTGGAATCAAGGCCCAGCACTGTACTA
CAGTCCTGTTTACAGATAATTACAGTGAAATGAATGGGTACCGAGGCTTCACCAAAGAGG
TACTTTTTTTTTTTTTAAGAGTAATTATACCAATTTTAAGAGCATTTCCCTACTCACCTT
CCCTACACAAACAAAACGTGGTGGTGTTGCCTTCAAACAAGAGAAGTTTTATGTCATTAA
TACTGACAGAAGAACTTTTTAAAAAATGTAACTGTCGAGTATATGATTTACACTTAGGAG
ACTGTTAATCTGTGCTAGATTGTCATTTTCCCCCCTTCTCCCACAAAGTTTACTGGTAAT
CCATGTCATGGCTTGTAGCTGTCCCTCTAACCACTCTGGAAATGCAGTCACCCAGTGTGA
AAGGAGCACTTGCTGGGCATCATTGACACCGTTCATGTTTTACTAATAGTTGAGTGATGA
GCATATCGAGAATTACCTTGCATTGCCTAAATCATGTGTATATAGTGAATGTTATATAAT
ATACCTGGCAGGTCTGTTTTAATTTAATTGAATAAAGATACAAATACTTTGTTTGGCTGG
CATATATTAAATTATTATCTGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAAAGCACTTCTCAACATATCCCCAAACTCCCTCCAAAAACTTACAAAAGGGAGCACA
CACACCCATCCATGCACAGAGATGGACCACCACTGTTGGAGAACGCCCATTCTTCCTGAA
CTCCTCTGTACCGGGATGTCCATTTTCTTCACCCCAAATCCATTGCTGGCAATGGATGCA
CTGAATGTGCCAGCACTGAGGAGTTAAAAATGAGAGCTCCAAACACTAATGACTCTACTT
CAAGATGCAGTATAAGACAATGAACTTAACCGAGACAAAATTATAAAATGAAAATGGTGT
TTGTTTAGAATATGGAAAGACTGATCTAGAGGAAGTGGACAACTGATTGCACCTGAAAAT
CAAGTAAAGGGACTTTTTCCAGCCAGTAGGCAGGAGTCCTCTTTTTGTGAAGTGATCTTT
CTCATTAAAGGGATGGAAAACACAGTCTAGTGTCCAACAGGCCCACATGATGACAGTTTT
TGTAATTCAAAATATTATGCACTTTTTAAAAAATCTTAAACAGGGATCTTCAAACCCTCC
TTTGTTTTCCTTTGCTTTTACTCGTCCTACTTTAGAATATTTTCTTAAAAATCATTCAGA
GGACTGTGAGGAAAGGCTGTGGTACCTGACTTGTTGGAATCAAGGCCCAGCACTGTACTA
CAGTCCTGTTTACAGATAATTACAGTGAAATGAATGGGTACCGAGGCTTCACCAAAGAGG
TACTTTTTTTTTTTTTAAGAGTAATTATACCAATTTTAAGAGCATTTCCCTACTCACCTT
CCCTACACAAACAAAACGTGGTGGTGTTGCCTTCAAACAAGAGAAGTTTTATGTCATTAA
TACTGACAGAAGAACTTTTTAAAAAATGTAACTGTCGAGTATATGATTTACACTTAGGAG
ACTGTTAATCTGTGCTAGATTGTCATTTTCCCCCCTTCTCCCACAAAGTTTACTGGTAAT
CCATGTCATGGCTTGTAGCTGTCCCTCTAACCACTCTGGAAATGCAGTCACCCAGTGTGA
AAGGAGCACTTGCTGGGCATCATTGACACCGTTCATGTTTTACTAATAGTTGAGTGATGA
GCATATCGAGAATTACCTTGCATTGCCTAAATCATGTGTATATAGTGAATGTTATATAAT
ATACCTGGCAGGTCTGTTTTAATTTAATTGAATAAAGATACAAATACTTTGTTTGGCTGG
CATATATTAAATTATTATCTGGAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-277, - strand, RNAz p=0.984019
               

               
               565-683, + strand, RNAz p=0.992047

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-277, - strand, RNAz p=0.984019
               

               
               565-683, + strand, RNAz p=0.992047

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-297, gnl|bosTau2|chr11 (15790509-15790806)
               

               
               1-297, gnl|Hg17|chr2 (39124734-39124418)
               

               
               1-297, gnl|Mm7|chr17 (78694012-78693700)
               


               
               449-1223, gnl|bosTau2|chr11 (15790825-15791609)
               

               
               449-1223, gnl|Hg17|chr2 (39124399-39123491)
               

               
               449-1223, gnl|Mm7|chr17 (78693535-78692816)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-297, gnl|bosTau2|chr11 (15790509-15790806)
               

               
               1-297, gnl|Hg17|chr2 (39124734-39124418)
               

               
               1-297, gnl|Mm7|chr17 (78694012-78693700)
               


               
               449-1223, gnl|bosTau2|chr11 (15790825-15791609)
               

               
               449-1223, gnl|Hg17|chr2 (39124399-39123491)
               

               
               449-1223, gnl|Mm7|chr17 (78693535-78692816)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               sag (0.36543)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	1-277, - strand, RNAz p=0.984019
	565-683, + strand, RNAz p=0.992047

	1-297, gnl\|bosTau2\|chr11 (15790509-15790806)
	1-297, gnl\|Hg17\|chr2 (39124734-39124418)
	1-297, gnl\|Mm7\|chr17 (78694012-78693700)

	449-1223, gnl\|bosTau2\|chr11 (15790825-15791609)
	449-1223, gnl\|Hg17\|chr2 (39124399-39123491)
	449-1223, gnl\|Mm7\|chr17 (78693535-78692816)

	sag (0.36543)
	sme (0.305437)
	cte (0.29274)
	fce (0.271592)
	ste (0.270416)
	aor (0.195274)
	cmu (0.186393)
	nco (0.161734)
	fco (0.157208)
	pla (0.133672)
	thg (0.126791)
	jca (0.11396)
	ldo (0.0970026)