Ss1.1-Pig4-TMW8040D19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAGTTGTGACCCAAATCTTCAGGTGTTCAATGTTTTCATTGATAACCTCGATACCCGTC TTCCCCGAATAGCATTATTTTCCACAAGAACCATAAATGCTGGAGAAGAGCTCACTTTTG ATTATCAAATGAAAGGTTCTGGAGATATATCTTCAGATTCTATTGACCACAGCCCAGCCA AAAAGAGGGCCAGAACTGTGTGCAAATGTGGAGCTGTGACTTGCAGAGGTTACCTCAACT GAATTTTCAGGAAATAGAGCTGAAGATGATTGTAGTTTTTTTTCTAATGTTAACATTTTA AAAAATAAGTATTTGGGACTTTTTTCACATTATCAAGATTATACACTATGTTAATTTACA ATTCATGTTTCACACGATTGGCCAAATGCATTACTGATGTTTCTGAAGAGAGGAACACAA GGTCACATAGACTAATTTGAAATATACATATTCAGTGGTTAGATGCCAAATATGAAAGGA TTATAGATTAGCATATATACACTTAAAAGGTCTGTGTGAATAGCAAATGCCTCCTTCAAT GTTTAAGTGTTAAACTGATAATGTAAGAGTCACTAAGATGAAACATCGAACTTGCCATAC ATCTTGAATTTAGAGAAATAGAGTTAATTCATTTTGGGCAAATATACAAGCTCTATTTTT GTTATTATGTTGTCATTCCTGTTTATCTACTTACTACTCATTGTTCTTGTATTTGAGACA AATAAGTTATACTGAATTATACTCTATTTTCTACTTTCATTAAAACATTGGGATCTTAAT ATACAGAAATTTAAGTTCTATAATTAAATGTAAAAAAATTTTAACAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAGTTGTGACCCAAATCTTCAGGTGTTCAATGTTTTCATTGATAACCTCGATACCCGTC TTCCCCGAATAGCATTATTTTCCACAAGAACCATAAATGCTGGAGAAGAGCTCACTTTTG ATTATCAAATGAAAGGTTCTGGAGATATATCTTCAGATTCTATTGACCACAGCCCAGCCA AAAAGAGGGCCAGAACTGTGTGCAAATGTGGAGCTGTGACTTGCAGAGGTTACCTCAACT GAATTTTCAGGAAATAGAGCTGAAGATGATTGTAGTTTTTTTTCTAATGTTAACATTTTA AAAAATAAGTATTTGGGACTTTTTTCACATTATCAAGATTATACACTATGTTAATTTACA ATTCATGTTTCACACGATTGGCCAAATGCATTACTGATGTTTCTGAAGAGAGGAACACAA GGTCACATAGACTAATTTGAAATATACATATTCAGTGGTTAGATGCCAAATATGAAAGGA TTATAGATTAGCATATATACACTTAAAAGGTCTGTGTGAATAGCAAATGCCTCCTTCAAT GTTTAAGTGTTAAACTGATAATGTAAGAGTCACTAAGATGAAACATCGAACTTGCCATAC ATCTTGAATTTAGAGAAATAGAGTTAATTCATTTTGGGCAAATATACAAGCTCTATTTTT GTTATTATGTTGTCATTCCTGTTTATCTACTTACTACTCATTGTTCTTGTATTTGAGACA AATAAGTTATACTGAATTATACTCTATTTTCTACTTTCATTAAAACATTGGGATCTTAAT ATACAGAAATTTAAGTTCTATAATTAAATGTAAAAAAATTTTAACAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 19-137, - strand, RNAz p=0.794945 | |
| 30-137, - strand, RNAz p=0.533792 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 19-137, - strand, RNAz p=0.794945 | |
| 30-137, - strand, RNAz p=0.533792 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 6-112, - strand, RNAmicro p=0.967386 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 6-137, gnl|bosTau2|chr13 (17362194-17362063) | |
| 6-137, gnl|canFam2|chr2 (24564324-24564179) | |
| 6-137, gnl|canFam2|chr2 (24564317-24564191) | |
| 6-137, gnl|danRer3|chr8 (15561587-15561732) | |
| 6-137, gnl|danRer3|chr8 (15561594-15561719) | |
| 6-137, gnl|dasNov1|scaffold_6132 (55341-55196) | |
| 6-137, gnl|dasNov1|scaffold_6132 (55334-55208) | |
| 6-137, gnl|echTel1|scaffold_313881 (13194-13049) | |
| 6-137, gnl|echTel1|scaffold_313881 (13187-13061) | |
| 6-137, gnl|fr1|chrUn (254038360-254038498) | |
| 6-137, gnl|galGal2|chrUn (142561594-142561735) | |
| 6-137, gnl|galGal2|chrUn (142561601-142561727) | |
| 6-137, gnl|hg17|chr10 (14983133-14983278) | |
| 6-137, gnl|Hg17|chr10 (14983138-14983269) | |
| 6-137, gnl|hg17|chr6 (68701062-68701191) | |
| 6-137, gnl|loxAfr1|scaffold_5226 (90651-90505) | |
| 6-137, gnl|loxAfr1|scaffold_5226 (90644-90518) | |
| 6-137, gnl|mm7|chr2 (3377165-3377020) | |
| 6-137, gnl|mm7|chr2 (3377158-3377028) | |
| 6-137, gnl|Mm7|chr2 (3377158-3377027) | |
| 6-137, gnl|monDom2|scaffold_30 (14344115-14344259) | |
| 6-137, gnl|monDom2|scaffold_30 (14344122-14344248) | |
| 6-137, gnl|oryCun1|scaffold_192404 (1035-890) | |
| 6-137, gnl|oryCun1|scaffold_192404 (1028-901) | |
| 6-137, gnl|panTro1|chr5 (69782240-69782370) | |
| 6-137, gnl|panTro1|chr8 (15450919-15451064) | |
| 6-137, gnl|rheMac2|chr4 (64314568-64314697) | |
| 6-137, gnl|rheMac2|chr9 (15176036-15176181) | |
| 6-137, gnl|rn3|chr17 (85901891-85902036) | |
| 6-137, gnl|rn3|chr17 (85901898-85902024) | |
| 6-137, gnl|tetNig1|chrUn_random (108034221-108034083) | |
| 6-137, gnl|xenTro1|scaffold_200 (968027-968169) | |
| 6-137, gnl|xenTro1|scaffold_200 (968038-968164) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-137, gnl|bosTau2|chr13 (17362194-17362063) | |
| 6-137, gnl|canFam2|chr2 (24564324-24564179) | |
| 6-137, gnl|canFam2|chr2 (24564317-24564191) | |
| 6-137, gnl|danRer3|chr8 (15561587-15561732) | |
| 6-137, gnl|danRer3|chr8 (15561594-15561719) | |
| 6-137, gnl|dasNov1|scaffold_6132 (55341-55196) | |
| 6-137, gnl|dasNov1|scaffold_6132 (55334-55208) | |
| 6-137, gnl|echTel1|scaffold_313881 (13194-13049) | |
| 6-137, gnl|echTel1|scaffold_313881 (13187-13061) | |
| 6-137, gnl|fr1|chrUn (254038360-254038498) | |
| 6-137, gnl|galGal2|chrUn (142561594-142561735) | |
| 6-137, gnl|galGal2|chrUn (142561601-142561727) | |
| 6-137, gnl|hg17|chr10 (14983133-14983278) | |
| 6-137, gnl|Hg17|chr10 (14983138-14983269) | |
| 6-137, gnl|hg17|chr6 (68701062-68701191) | |
| 6-137, gnl|loxAfr1|scaffold_5226 (90651-90505) | |
| 6-137, gnl|loxAfr1|scaffold_5226 (90644-90518) | |
| 6-137, gnl|mm7|chr2 (3377165-3377020) | |
| 6-137, gnl|mm7|chr2 (3377158-3377028) | |
| 6-137, gnl|Mm7|chr2 (3377158-3377027) | |
| 6-137, gnl|monDom2|scaffold_30 (14344115-14344259) | |
| 6-137, gnl|monDom2|scaffold_30 (14344122-14344248) | |
| 6-137, gnl|oryCun1|scaffold_192404 (1035-890) | |
| 6-137, gnl|oryCun1|scaffold_192404 (1028-901) | |
| 6-137, gnl|panTro1|chr5 (69782240-69782370) | |
| 6-137, gnl|panTro1|chr8 (15450919-15451064) | |
| 6-137, gnl|rheMac2|chr4 (64314568-64314697) | |
| 6-137, gnl|rheMac2|chr9 (15176036-15176181) | |
| 6-137, gnl|rn3|chr17 (85901891-85902036) | |
| 6-137, gnl|rn3|chr17 (85901898-85902024) | |
| 6-137, gnl|tetNig1|chrUn_random (108034221-108034083) | |
| 6-137, gnl|xenTro1|scaffold_200 (968027-968169) | |
| 6-137, gnl|xenTro1|scaffold_200 (968038-968164) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| fat (0.147427) | |
| liv (0.146284) | |
| ssp (0.13552) | |
| ova (0.129132) | |
| bla (0.124347) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (0.147427) | |
| liv (0.146284) | |
| ssp (0.13552) | |
| ova (0.129132) | |
| bla (0.124347) |