Non-Coding RNA Search

Ss1.1-Pig4-TMW8040E03.5

Sequence:


               
               TGGCTTATCTCGTGAGGGCAGGTCCTGCCCTTTCTGAAGTCCCCATGCGACCAGCCTACC
CTGCTTCCTGGGTAGGCCGCCGTCTCAGGCTCTGGAGACCGGGACGCAGGACAAGCCTGG
GCCCAGGCCTTCGAGTCCAGCTTCCAACAGCACAGGGCCTTCTCAGAACCCAGCGGCGCG
CTCACCCGGCTCTGTCCCACCACACCAAGGAGCTGATGCTTTGCATCCTCAGATGACAAA
GGGTCCAGAAGGCAGTCCAGGCTGCTCCCTCAAAGAGCTCCTGCAGCCATCGGATGGCTC
CCGGGGCGGCAGGGTCCAAGGTGCTGGCGTTAGTACCGCTGCTGGGTCTGTGAGCTGCAG
TGGTCCCAACTCGGCTGCACAGTGTACAGTTCTGCGGGGAGGAGGCTGCTTGTCCAAGGC
TGGTGCTGACACCTCTGCCTTAAGGTCTCTGTCTGCGGAGCGAGGAGGCCCAGAGCGGGG
TTCTGCCCTGGAAGGAGGGGAAGATCGCCCGAGGGGCCTGCTTTGGGCGCAGGCCTCTCC
TGACCCTTCTCGGCTCCAGCCCCGTGGCCGTCTTTGCCCTGCGGTCGGGCCCTTAGCTCT
CTTCTCGGTGCTGCCCAGCCAGTGCCTTCGGTCCTGGGCGTTACTGGCTACTTGAGAAAA
AGGAAAGGGGTGAACCCCTTCCTCCATCCAACTGCCTCAGACACCCCCTCCCCACCCCGG
CAAAGCGATTCCTGCCTCCCTGTAACCATGGCTACCACCGAGAATTTTAGCTGGACCCTT
GGCAGCGCGGCTCTGGAAGCCTGTGGCGTTACCACGTTTCCCCTCTGAGCCTGGGATCCA
CAGCTCTGCTTTCAGTGGACGCTGCCCTGAGCCCAGTCGTCAGTGGCTTTCCTGCAGCAA
GTGTGTTCCCAACCGGCCAGGTGGCATCAGCCTCCATGTTCCCTCTGCAGCCTGGGACCC
CTGGCCACCGGCCATCTCCCAGGGACCTCCGGGTCGTGGCGACTGCAGGAGGCCAACCCT
CGTGGTGCTAGAACCCTGGGGACACTGGTCCAGACCTCGGAAGCCGAAACCCACGCTCCT
CTCACCGCCCTGAGTGCCCAGAGCAGGCTCAAGGCGTCCTCCTACCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCTTATCTCGTGAGGGCAGGTCCTGCCCTTTCTGAAGTCCCCATGCGACCAGCCTACC
CTGCTTCCTGGGTAGGCCGCCGTCTCAGGCTCTGGAGACCGGGACGCAGGACAAGCCTGG
GCCCAGGCCTTCGAGTCCAGCTTCCAACAGCACAGGGCCTTCTCAGAACCCAGCGGCGCG
CTCACCCGGCTCTGTCCCACCACACCAAGGAGCTGATGCTTTGCATCCTCAGATGACAAA
GGGTCCAGAAGGCAGTCCAGGCTGCTCCCTCAAAGAGCTCCTGCAGCCATCGGATGGCTC
CCGGGGCGGCAGGGTCCAAGGTGCTGGCGTTAGTACCGCTGCTGGGTCTGTGAGCTGCAG
TGGTCCCAACTCGGCTGCACAGTGTACAGTTCTGCGGGGAGGAGGCTGCTTGTCCAAGGC
TGGTGCTGACACCTCTGCCTTAAGGTCTCTGTCTGCGGAGCGAGGAGGCCCAGAGCGGGG
TTCTGCCCTGGAAGGAGGGGAAGATCGCCCGAGGGGCCTGCTTTGGGCGCAGGCCTCTCC
TGACCCTTCTCGGCTCCAGCCCCGTGGCCGTCTTTGCCCTGCGGTCGGGCCCTTAGCTCT
CTTCTCGGTGCTGCCCAGCCAGTGCCTTCGGTCCTGGGCGTTACTGGCTACTTGAGAAAA
AGGAAAGGGGTGAACCCCTTCCTCCATCCAACTGCCTCAGACACCCCCTCCCCACCCCGG
CAAAGCGATTCCTGCCTCCCTGTAACCATGGCTACCACCGAGAATTTTAGCTGGACCCTT
GGCAGCGCGGCTCTGGAAGCCTGTGGCGTTACCACGTTTCCCCTCTGAGCCTGGGATCCA
CAGCTCTGCTTTCAGTGGACGCTGCCCTGAGCCCAGTCGTCAGTGGCTTTCCTGCAGCAA
GTGTGTTCCCAACCGGCCAGGTGGCATCAGCCTCCATGTTCCCTCTGCAGCCTGGGACCC
CTGGCCACCGGCCATCTCCCAGGGACCTCCGGGTCGTGGCGACTGCAGGAGGCCAACCCT
CGTGGTGCTAGAACCCTGGGGACACTGGTCCAGACCTCGGAAGCCGAAACCCACGCTCCT
CTCACCGCCCTGAGTGCCCAGAGCAGGCTCAAGGCGTCCTCCTACCTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               190-955, gnl|bosTau2|chr16 (48710646-48709863)
               

               
               190-955, gnl|Hg17|chr1 (198522754-198523553)
               

               
               190-955, gnl|Mm7|chr1 (135329499-135328685)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               190-955, gnl|bosTau2|chr16 (48710646-48709863)
               

               
               190-955, gnl|Hg17|chr1 (198522754-198523553)
               

               
               190-955, gnl|Mm7|chr1 (135329499-135328685)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

	190-955, gnl\|bosTau2\|chr16 (48710646-48709863)
	190-955, gnl\|Hg17\|chr1 (198522754-198523553)
	190-955, gnl\|Mm7\|chr1 (135329499-135328685)