Non-Coding RNA Search

Ss1.1-Pig4-TMW8040E04.5

Sequence:


               
               GGCGGGCGGCCTTTTTTTCTGTGCAATTTCGCTCCTGCAGCGCCCTCCGTCCCGCCTTGT
GGCGGTCTCCACCCTGCAGCGTGTATTCCTTTCCCATCCCTAGGAGTGGTTTTCCTCGTT
TAGAAGCAGCTTCTACCTTTGGAGAAAGTAAAAGGCACTAATCGGAAACCTTCAAATCGA
AAACCTGCCAGTTTTTACATTTTTCGCTTTCTTTCTCATATACTAGCGGGTCCTTTTTTT
TTTTTTTTTCCCCTTTTGTGTTCACTAAGAAGATTAGTGAGTTTGTTACCATTGACTGAA
AGCGTTTCTCTGTTAAGAAGAGATATTTTTATTTAAATTGAAACGTAAGGGGTGTTAATT
GTTGGTTAATACATGGCTCATAAACACAGGGAAGATTACTTGAACTTGTCCCCGTGCATT
TTTACTTGGTACCAAACACTTTCTCAGTTGTCATTTGATGGAGAAAAACTCAGGTCAGTA
TGTGCTAAGTGACTTATTTTTAAGATTAACAATGGGATAGTTAAGTAGAAAGTGGTTAGG
GATTTTCACCTGCTTAGTAACGGTAAATGTTAGGTTAACTTAAACGACAGGATACTGCAA
TAGGTGTCCATTACTATACAAACAGGTGTTGGAAAACAACTCTTTAGGTGTCAATAGCAC
TTGCTAAAGAACAGTGACTCCCTAAACTTGGGCTGATAGTGGAATTACTTGGCAAAATCT
TGTGAAACTCCTGAGATTTCCCCATTCTGGAAATTTTCATTTAGTCCTAGTAAACTTGTT
AAAATGCTGTGGTGAAGCTTATGTCCTGCTTTGTTGGGAAATTCTTGCAAAGATTTCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGGCGGCCTTTTTTTCTGTGCAATTTCGCTCCTGCAGCGCCCTCCGTCCCGCCTTGT
GGCGGTCTCCACCCTGCAGCGTGTATTCCTTTCCCATCCCTAGGAGTGGTTTTCCTCGTT
TAGAAGCAGCTTCTACCTTTGGAGAAAGTAAAAGGCACTAATCGGAAACCTTCAAATCGA
AAACCTGCCAGTTTTTACATTTTTCGCTTTCTTTCTCATATACTAGCGGGTCCTTTTTTT
TTTTTTTTTCCCCTTTTGTGTTCACTAAGAAGATTAGTGAGTTTGTTACCATTGACTGAA
AGCGTTTCTCTGTTAAGAAGAGATATTTTTATTTAAATTGAAACGTAAGGGGTGTTAATT
GTTGGTTAATACATGGCTCATAAACACAGGGAAGATTACTTGAACTTGTCCCCGTGCATT
TTTACTTGGTACCAAACACTTTCTCAGTTGTCATTTGATGGAGAAAAACTCAGGTCAGTA
TGTGCTAAGTGACTTATTTTTAAGATTAACAATGGGATAGTTAAGTAGAAAGTGGTTAGG
GATTTTCACCTGCTTAGTAACGGTAAATGTTAGGTTAACTTAAACGACAGGATACTGCAA
TAGGTGTCCATTACTATACAAACAGGTGTTGGAAAACAACTCTTTAGGTGTCAATAGCAC
TTGCTAAAGAACAGTGACTCCCTAAACTTGGGCTGATAGTGGAATTACTTGGCAAAATCT
TGTGAAACTCCTGAGATTTCCCCATTCTGGAAATTTTCATTTAGTCCTAGTAAACTTGTT
AAAATGCTGTGGTGAAGCTTATGTCCTGCTTTGTTGGGAAATTCTTGCAAAGATTTCTGG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               34-152, gnl|bosTau2|chr21 (8026223-8026340)
               

               
               34-152, gnl|Hg17|chr15 (91248792-91248909)
               

               
               34-152, gnl|Mm7|chr7 (69390509-69390367)
               


               
               191-840, gnl|bosTau2|chr21 (8026354-8026989)
               

               
               191-840, gnl|Hg17|chr15 (91248923-91249577)
               

               
               191-840, gnl|Mm7|chr7 (69390352-69389763)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-152, gnl|bosTau2|chr21 (8026223-8026340)
               

               
               34-152, gnl|Hg17|chr15 (91248792-91248909)
               

               
               34-152, gnl|Mm7|chr7 (69390509-69390367)
               


               
               191-840, gnl|bosTau2|chr21 (8026354-8026989)
               

               
               191-840, gnl|Hg17|chr15 (91248923-91249577)
               

               
               191-840, gnl|Mm7|chr7 (69390352-69389763)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	34-152, gnl\|bosTau2\|chr21 (8026223-8026340)
	34-152, gnl\|Hg17\|chr15 (91248792-91248909)
	34-152, gnl\|Mm7\|chr7 (69390509-69390367)

	191-840, gnl\|bosTau2\|chr21 (8026354-8026989)
	191-840, gnl\|Hg17\|chr15 (91248923-91249577)
	191-840, gnl\|Mm7\|chr7 (69390352-69389763)