Non-Coding RNA Search

Ss1.1-Pig4-TMW8040E14.3

Sequence:


               
               GATTCCTGGCCCTGCTGGCCAGCCTGCTGGCAACCTCCAGGGTTGGCTTGGCCACCCTGG
CAGACATTGTGGGCGGCAGGAGGGCCCAGCCGCAGGAGTTCCCGTTTCTGGCCTCCATTC
AGAAACAAGGGAGGCCCTTTTGCGCCGGAGCCCTGGTCCATCCCCGCTTCGTCCTGACAG
CGGCCAGCTGCTTCCGTGGCAAGAACAGCGGAAGTGCCTCTGTGGTGCTGGGGGCCTATG
ACCTGAGGCAGCAGGAGCAGTCCCGGCAGACATTCTCCATCAGGAGCATCAGCCAGAACG
GCTATGACCCCCGGCAGAATCTGAACGATGTGCTGCTGCTGCAGCTGGACCGTGAGGCCA
GACTCACCCCCAGTGTGGCCCTGGTACCGCTGCCCCCGCAGAATGCCACAGTGGAAGCTG
GCACCAACTGCCAAGTTGCGGGCTGGGGGACCCAGCGGCTTAGGAGGCTTTTCTCCCGCT
TCCCAAGGGTGCTCAATGTCACCGTGACCTCAAACCCGTGTCTCCCCAGAGACATGTGCA
TTGGTGTCTTCAGCCGCCGGGGCCGCATCAGCCAGGGAGACAGAGGCACCCCCCTCGTCT
GCAACGGCCTGGCGCAGGGCGTGGCCTCCTTCCTCCGGAGGCGTTTCCGCAGGAGCTCCG
GCTTCTTCACCCGCGTGGCGCTCTTCAGAAATTGGATTGATTCAGTTCTCAACAACCCGC
CGGCCTGAAGGATCCCCTCGCCGAGCCCGTGGGAGGGGGGCCTGTTAGCCCCCTGGAGCC
CTGCCCCCACTGCCACACCTCCCGCGCTGCGTGTCCCATCCCAAAGCCCCATCCTGGACC
GCTCTGTCGAGGCTGTAATAAAGAAGCTGTTACCATTAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTCCTGGCCCTGCTGGCCAGCCTGCTGGCAACCTCCAGGGTTGGCTTGGCCACCCTGG
CAGACATTGTGGGCGGCAGGAGGGCCCAGCCGCAGGAGTTCCCGTTTCTGGCCTCCATTC
AGAAACAAGGGAGGCCCTTTTGCGCCGGAGCCCTGGTCCATCCCCGCTTCGTCCTGACAG
CGGCCAGCTGCTTCCGTGGCAAGAACAGCGGAAGTGCCTCTGTGGTGCTGGGGGCCTATG
ACCTGAGGCAGCAGGAGCAGTCCCGGCAGACATTCTCCATCAGGAGCATCAGCCAGAACG
GCTATGACCCCCGGCAGAATCTGAACGATGTGCTGCTGCTGCAGCTGGACCGTGAGGCCA
GACTCACCCCCAGTGTGGCCCTGGTACCGCTGCCCCCGCAGAATGCCACAGTGGAAGCTG
GCACCAACTGCCAAGTTGCGGGCTGGGGGACCCAGCGGCTTAGGAGGCTTTTCTCCCGCT
TCCCAAGGGTGCTCAATGTCACCGTGACCTCAAACCCGTGTCTCCCCAGAGACATGTGCA
TTGGTGTCTTCAGCCGCCGGGGCCGCATCAGCCAGGGAGACAGAGGCACCCCCCTCGTCT
GCAACGGCCTGGCGCAGGGCGTGGCCTCCTTCCTCCGGAGGCGTTTCCGCAGGAGCTCCG
GCTTCTTCACCCGCGTGGCGCTCTTCAGAAATTGGATTGATTCAGTTCTCAACAACCCGC
CGGCCTGAAGGATCCCCTCGCCGAGCCCGTGGGAGGGGGGCCTGTTAGCCCCCTGGAGCC
CTGCCCCCACTGCCACACCTCCCGCGCTGCGTGTCCCATCCCAAAGCCCCATCCTGGACC
GCTCTGTCGAGGCTGTAATAAAGAAGCTGTTACCATTAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               CAP7_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               CAP7_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               342-451, - strand, RNAz p=0.875871

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               342-451, - strand, RNAz p=0.875871

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               45-195, gnl|bosTau2|chr7 (29311264-29311114)
               

               
               45-195, gnl|Hg17|chr19 (779229-779379)
               

               
               45-195, gnl|Mm7|chr10 (79660444-79660603)
               


               
               342-576, gnl|bosTau2|chr7 (29309770-29309533)
               

               
               342-576, gnl|echTel1|scaffold_250713 (2927-2754)
               

               
               342-576, gnl|hg17|chr19 (781696-781869)
               

               
               342-576, gnl|Hg17|chr19 (781705-781940)
               

               
               342-576, gnl|panTro1|chr20 (838050-838223)
               

               
               342-576, gnl|rheMac2|chr19 (568060-568233)
               

               
               342-576, gnl|rn3|chr2 (44418680-44418507)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-195, gnl|bosTau2|chr7 (29311264-29311114)
               

               
               45-195, gnl|Hg17|chr19 (779229-779379)
               

               
               45-195, gnl|Mm7|chr10 (79660444-79660603)
               


               
               342-576, gnl|bosTau2|chr7 (29309770-29309533)
               

               
               342-576, gnl|echTel1|scaffold_250713 (2927-2754)
               

               
               342-576, gnl|hg17|chr19 (781696-781869)
               

               
               342-576, gnl|Hg17|chr19 (781705-781940)
               

               
               342-576, gnl|panTro1|chr20 (838050-838223)
               

               
               342-576, gnl|rheMac2|chr19 (568060-568233)
               

               
               342-576, gnl|rn3|chr2 (44418680-44418507)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nbm (0.794597)
               

               
               cly (0.241284)
               

               
               eli (0.151814)
               

               
               nca (0.136874)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.794597)
               

               
               cly (0.241284)
               

               
               eli (0.151814)
               

               
               nca (0.136874)

	45-195, gnl\|bosTau2\|chr7 (29311264-29311114)
	45-195, gnl\|Hg17\|chr19 (779229-779379)
	45-195, gnl\|Mm7\|chr10 (79660444-79660603)

	342-576, gnl\|bosTau2\|chr7 (29309770-29309533)
	342-576, gnl\|echTel1\|scaffold_250713 (2927-2754)
	342-576, gnl\|hg17\|chr19 (781696-781869)
	342-576, gnl\|Hg17\|chr19 (781705-781940)
	342-576, gnl\|panTro1\|chr20 (838050-838223)
	342-576, gnl\|rheMac2\|chr19 (568060-568233)
	342-576, gnl\|rn3\|chr2 (44418680-44418507)