Ss1.1-Pig4-TMW8040E16.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGAAGGGTCGGCGGTGGGAAAGATGGCGGCGACTTTGGGACCCTCTGGGTGGTGGCAGC GGTGGTGGCGGCGTTTGTCGACTCGAGATGGGTCCAGGATGTTGCTCCTTCTCCTTTTGC TAGGGTCTGGGCAGGGGCCACGGCAAGTCGGGGCGGGTCAGACGTTCGAGTACTTGAAAC GGGAGCACTCGCTGTCGAAGCCCTACCAGGGTGTGGGCACGGGCAGTTCCTCTCTGTGGA ATCTGATGGGCAATGCCATGGTGATGACACAGTATATCCGCCTGACCCCAGATATGCAAA GTAAACAGGGTGCCCTGTGGAACCGGGTGCTACATTGTCTTCCTTGAGGTATGGCGGCAA GAAGTGAATGCAGTATTCCTGGTGTGGCTGCACTGTGATTTTGTACAAGTCCTTGTTTCC TGAGAGACTGGGAGTTGCAGGTGCACTTCAGAATCCACGGACAAGGGAAGAAGAATCTGC ATGGGGATGGCTTGGCGATCTGGTACACAAAGGATCGGATGCAGCCAGGGCCCGTGTTTG GAAACATGGACAAATTTGTGGGGCTGGGAGTATTTGTAGACACCTATCCCAATGAGGAGA AGCAGCAAGAGCGGGTGTTCCCCTACATCTCAGCCATGGTGAACAATGGCTCCCTCAGCT ATGATCATGAACGGGACGGGCGGCCTACAGAGCTGGGGGGCTGTACAGCCATTGTCCGCA ATCTCCATTATGACACCTTCCTTGTGATCCGATATGTCAAGAGGCATTTGACGATAATGA TGGACATCGACGGCAAGCATGAGTGGAGGGACTGCATAGAGGTGCCCGGGGTCCGTCTGC CCCGGGGCTACTATTTTGGCACCTCCTCCATCACTGGGGATCTCTCGGACAACCATGATG TCATTTCCCTGAAGCTGTTTGAACTGACAGTGGAGAGAACACCAGAAGAGGAGAAGCTGC ACCGGGATGTGTTCCTGCCCTCGGTGGACAACATGAAACTGCCTGAGATGACAGCACCAC TGCCACCCCTGAGTGGCCTGGCTCTTTTCCTCATCGTCTTTTTCTCTTTGGTGTTTTCTG TATTTGCCATTGTCATCGGGATCATACTGTACAACAAATGGCAGGAACAGAGCCGAAAAC GCTTCTACTGAGCCCTCCTGCAACCATGACCTCTGTGATTGTCACCCAGGAGGTGTTGGA GCAGCAGGTGCTGCCCTGATCACACAGCCTGGCAGGGCTCTTCTCCCATCTTGAGCAGCT GGTCTGGGACTCAGTTCTGTCACTGGAGCTTTAAGTGCAAGGATACTGTTCCCATGATCA CCGTGAAGACGTCTAACTCTGGATCAGGAAGCACACCCACCCACCCAGGCGACACTGCTG TGATGTGCCTTTCCTTCAGTCCTGCCTCTTGGGAGTGAAGAGGGACAGAGAGAACATGGG CTGTCTTGATGCCAGAAACACAGAAAAGAGTTTCCTAGCCCAGGCTGCCTTGTTGCTGGA CTCAGAGGACCCTGTCCTTCATTTTTAAATCTGCAAAGACTAGAAAACTGACAGCTCCTT GTACCTTCCAGCCATCTATCCACTGGTTTTTGCTTTTTGTCTGAGTCTCTGGCCACTTGA GGAGCTTGCTTTGGAAATCTGGGTGGAAGTTTTTTCCCTGCTTCATCTTCCTCTCTCTCT GTTCACTGTGTTCTCTGTAATGCAGCCGAGCTGGAGAAGACACTTGGATGCCTTTGCTGG GGCCTCGGGTGCAGGATGAACTTTAGTTTCACTGATCCCCGTTAGGTGGCTGTGGGGAGA GGCCATTCTGCTGTGGCTCACTGCTCCAGCCTGGATCTTGGTTCTCTTGGCATGTTCATG ACCTTCCTAATTAGGTCCCTTCAGGCCCTCCGTCAGGTTCGGCTGAAAGCTGGTGTGCAA GTCACGGGAAGCTTGGGAGATGTCATGGATGCCGTGGGACTCACTGTGACACTGTTCCAC ATTCTGACACCGAAAGCAGCACCTGCCATGTGATCTGACCACATGGAGATGTTTCTGGAC TCTCTGGAGCCTGCTTAGCCGCCTGCATGTTTTGCGTTCATCATGATTTTTGGAATCCCA CAAGAGTGTTCAAAATGTAAGCAAGCTTTCTTTTATAACCTCAGTCTGGATACTTCAGAA GGAAATCTGTCTTCTCTTTCTTAATGGATAAGAAATAGTTGTTGAGAGTCTGGGAGCAAT GGACCCTCGTCACCTGTGCCTGGAAAAGTTGGTTGTCGTTGAGCAGCAGGGCCCAAGTGT CCTCCTCTGTGGGTCAACCCTGATTCCACTGCCTTACCTGACAAGTCACGTGCTGCTCGC CTGTCTGCCCTGTGATCCAACCACTAACAGGACAGAGTCTCCTTCGAGGGCCTGAATGCC GAGCTCTACTAGCCATGTGCTTCTGTAGCCCCAGGGAGATTAGTAAAATGGCTGGTGGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGAAGGGTCGGCGGTGGGAAAGATGGCGGCGACTTTGGGACCCTCTGGGTGGTGGCAGC GGTGGTGGCGGCGTTTGTCGACTCGAGATGGGTCCAGGATGTTGCTCCTTCTCCTTTTGC TAGGGTCTGGGCAGGGGCCACGGCAAGTCGGGGCGGGTCAGACGTTCGAGTACTTGAAAC GGGAGCACTCGCTGTCGAAGCCCTACCAGGGTGTGGGCACGGGCAGTTCCTCTCTGTGGA ATCTGATGGGCAATGCCATGGTGATGACACAGTATATCCGCCTGACCCCAGATATGCAAA GTAAACAGGGTGCCCTGTGGAACCGGGTGCTACATTGTCTTCCTTGAGGTATGGCGGCAA GAAGTGAATGCAGTATTCCTGGTGTGGCTGCACTGTGATTTTGTACAAGTCCTTGTTTCC TGAGAGACTGGGAGTTGCAGGTGCACTTCAGAATCCACGGACAAGGGAAGAAGAATCTGC ATGGGGATGGCTTGGCGATCTGGTACACAAAGGATCGGATGCAGCCAGGGCCCGTGTTTG GAAACATGGACAAATTTGTGGGGCTGGGAGTATTTGTAGACACCTATCCCAATGAGGAGA AGCAGCAAGAGCGGGTGTTCCCCTACATCTCAGCCATGGTGAACAATGGCTCCCTCAGCT ATGATCATGAACGGGACGGGCGGCCTACAGAGCTGGGGGGCTGTACAGCCATTGTCCGCA ATCTCCATTATGACACCTTCCTTGTGATCCGATATGTCAAGAGGCATTTGACGATAATGA TGGACATCGACGGCAAGCATGAGTGGAGGGACTGCATAGAGGTGCCCGGGGTCCGTCTGC CCCGGGGCTACTATTTTGGCACCTCCTCCATCACTGGGGATCTCTCGGACAACCATGATG TCATTTCCCTGAAGCTGTTTGAACTGACAGTGGAGAGAACACCAGAAGAGGAGAAGCTGC ACCGGGATGTGTTCCTGCCCTCGGTGGACAACATGAAACTGCCTGAGATGACAGCACCAC TGCCACCCCTGAGTGGCCTGGCTCTTTTCCTCATCGTCTTTTTCTCTTTGGTGTTTTCTG TATTTGCCATTGTCATCGGGATCATACTGTACAACAAATGGCAGGAACAGAGCCGAAAAC GCTTCTACTGAGCCCTCCTGCAACCATGACCTCTGTGATTGTCACCCAGGAGGTGTTGGA GCAGCAGGTGCTGCCCTGATCACACAGCCTGGCAGGGCTCTTCTCCCATCTTGAGCAGCT GGTCTGGGACTCAGTTCTGTCACTGGAGCTTTAAGTGCAAGGATACTGTTCCCATGATCA CCGTGAAGACGTCTAACTCTGGATCAGGAAGCACACCCACCCACCCAGGCGACACTGCTG TGATGTGCCTTTCCTTCAGTCCTGCCTCTTGGGAGTGAAGAGGGACAGAGAGAACATGGG CTGTCTTGATGCCAGAAACACAGAAAAGAGTTTCCTAGCCCAGGCTGCCTTGTTGCTGGA CTCAGAGGACCCTGTCCTTCATTTTTAAATCTGCAAAGACTAGAAAACTGACAGCTCCTT GTACCTTCCAGCCATCTATCCACTGGTTTTTGCTTTTTGTCTGAGTCTCTGGCCACTTGA GGAGCTTGCTTTGGAAATCTGGGTGGAAGTTTTTTCCCTGCTTCATCTTCCTCTCTCTCT GTTCACTGTGTTCTCTGTAATGCAGCCGAGCTGGAGAAGACACTTGGATGCCTTTGCTGG GGCCTCGGGTGCAGGATGAACTTTAGTTTCACTGATCCCCGTTAGGTGGCTGTGGGGAGA GGCCATTCTGCTGTGGCTCACTGCTCCAGCCTGGATCTTGGTTCTCTTGGCATGTTCATG ACCTTCCTAATTAGGTCCCTTCAGGCCCTCCGTCAGGTTCGGCTGAAAGCTGGTGTGCAA GTCACGGGAAGCTTGGGAGATGTCATGGATGCCGTGGGACTCACTGTGACACTGTTCCAC ATTCTGACACCGAAAGCAGCACCTGCCATGTGATCTGACCACATGGAGATGTTTCTGGAC TCTCTGGAGCCTGCTTAGCCGCCTGCATGTTTTGCGTTCATCATGATTTTTGGAATCCCA CAAGAGTGTTCAAAATGTAAGCAAGCTTTCTTTTATAACCTCAGTCTGGATACTTCAGAA GGAAATCTGTCTTCTCTTTCTTAATGGATAAGAAATAGTTGTTGAGAGTCTGGGAGCAAT GGACCCTCGTCACCTGTGCCTGGAAAAGTTGGTTGTCGTTGAGCAGCAGGGCCCAAGTGT CCTCCTCTGTGGGTCAACCCTGATTCCACTGCCTTACCTGACAAGTCACGTGCTGCTCGC CTGTCTGCCCTGTGATCCAACCACTAACAGGACAGAGTCTCCTTCGAGGGCCTGAATGCC GAGCTCTACTAGCCATGTGCTTCTGTAGCCCCAGGGAGATTAGTAAAATGGCTGGTGGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 411-529, - strand, RNAz p=0.511664 | |
| 1552-1671, - strand, RNAz p=0.716388 | |
| 1945-2097, + strand, RNAz p=0.902596 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 411-529, - strand, RNAz p=0.511664 | |
| 1552-1671, - strand, RNAz p=0.716388 | |
| 1945-2097, + strand, RNAz p=0.902596 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BX648002, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-223, gnl|bosTau2|chr11 (3560783-3561005) | |
| 1-223, gnl|Hg17|chr2 (96827674-96827452) | |
| 1-223, gnl|Mm7|chr1 (36686637-36686418) | |
| 411-529, gnl|bosTau2|chr11 (3565168-3565286) | |
| 411-529, gnl|canFam2|chr10 (48347913-48347805) | |
| 411-529, gnl|danRer3|chr9 (39100035-39099942) | |
| 411-529, gnl|dasNov1|scaffold_5366 (50404-50319) | |
| 411-529, gnl|echTel1|scaffold_320008 (232091-232200) | |
| 411-529, gnl|fr1|chrUn (146686781-146686666) | |
| 411-529, gnl|hg17|chr2 (96822003-96822112) | |
| 411-529, gnl|Hg17|chr2 (96822137-96822019) | |
| 411-529, gnl|loxAfr1|scaffold_11525 (65872-65980) | |
| 411-529, gnl|mm7|chr1 (36680972-36681082) | |
| 411-529, gnl|Mm7|chr1 (36681107-36680989) | |
| 411-529, gnl|monDom2|scaffold_1 (154339203-154339312) | |
| 411-529, gnl|oryCun1|scaffold_200140 (10360-10250) | |
| 411-529, gnl|panTro1|chr12 (99842927-99843036) | |
| 411-529, gnl|rheMac2|chr13 (97156623-97156732) | |
| 411-529, gnl|rn3|chr9 (35380362-35380472) | |
| 411-529, gnl|tetNig1|chr4 (2531993-2531901) | |
| 411-529, gnl|xenTro1|scaffold_217 (146863-146956) | |
| 610-773, gnl|bosTau2|chr11 (3574538-3574701) | |
| 610-773, gnl|Hg17|chr2 (96799638-96799475) | |
| 610-773, gnl|Mm7|chr1 (36669844-36669681) | |
| 999-2460, gnl|bosTau2|chr11 (3578284-3579717) | |
| 999-2460, gnl|Hg17|chr2 (96795018-96793545) | |
| 999-2460, gnl|Mm7|chr1 (36665893-36664574) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-223, gnl|bosTau2|chr11 (3560783-3561005) | |
| 1-223, gnl|Hg17|chr2 (96827674-96827452) | |
| 1-223, gnl|Mm7|chr1 (36686637-36686418) | |
| 411-529, gnl|bosTau2|chr11 (3565168-3565286) | |
| 411-529, gnl|canFam2|chr10 (48347913-48347805) | |
| 411-529, gnl|danRer3|chr9 (39100035-39099942) | |
| 411-529, gnl|dasNov1|scaffold_5366 (50404-50319) | |
| 411-529, gnl|echTel1|scaffold_320008 (232091-232200) | |
| 411-529, gnl|fr1|chrUn (146686781-146686666) | |
| 411-529, gnl|hg17|chr2 (96822003-96822112) | |
| 411-529, gnl|Hg17|chr2 (96822137-96822019) | |
| 411-529, gnl|loxAfr1|scaffold_11525 (65872-65980) | |
| 411-529, gnl|mm7|chr1 (36680972-36681082) | |
| 411-529, gnl|Mm7|chr1 (36681107-36680989) | |
| 411-529, gnl|monDom2|scaffold_1 (154339203-154339312) | |
| 411-529, gnl|oryCun1|scaffold_200140 (10360-10250) | |
| 411-529, gnl|panTro1|chr12 (99842927-99843036) | |
| 411-529, gnl|rheMac2|chr13 (97156623-97156732) | |
| 411-529, gnl|rn3|chr9 (35380362-35380472) | |
| 411-529, gnl|tetNig1|chr4 (2531993-2531901) | |
| 411-529, gnl|xenTro1|scaffold_217 (146863-146956) | |
| 610-773, gnl|bosTau2|chr11 (3574538-3574701) | |
| 610-773, gnl|Hg17|chr2 (96799638-96799475) | |
| 610-773, gnl|Mm7|chr1 (36669844-36669681) | |
| 999-2460, gnl|bosTau2|chr11 (3578284-3579717) | |
| 999-2460, gnl|Hg17|chr2 (96795018-96793545) | |
| 999-2460, gnl|Mm7|chr1 (36665893-36664574) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| fcc (0.39557) | |
| elu (0.385356) | |
| hyp (0.285673) | |
| mas (0.210305) | |
| ill (0.175593) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ova (0.129132) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.39557) | |
| elu (0.385356) | |
| hyp (0.285673) | |
| mas (0.210305) | |
| ill (0.175593) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ova (0.129132) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| jej (0.0989218) |