Ss1.1-Pig4-TMW8040E17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTTTCTTTCCCTCCCTCTAGGTTCGTTTCGCGAGACCAGGGCCTGAGGTCCAGGAGCGC CCGGCAGTAACTGGAGTGAGGAGGCCTCTCCGCACCGCAGCGATGAGGCCCCGGAAAGCA TGCCTGCTCCTCCTGCTCCTGGCCCTGGCTCAGCTGCTGGCCGCGGCGAGCGCCGGGGGC CCAGACGAAGATTCTTCTCATAAAGAAGATGCTCTTGAGGAGGAGGAGGAGGAGGAAGAG GACGACGATGAGGAGGAGGACGACGATGACTTAGAAGTTAAGGAAGAAAACGGAGTCTTA GTCCTAAAAGACTCGAACTTTGATAACTTCGTGGCTGACAAAGACACGGTGCTACTGGAG TTCTACGCTCCGTGGTGCGGACATTGCAAGCAGTTTGCTCCAGAATATGAAAAAATTGCA ACTACCTTGAAGGAGAATGACCCTCCCATTCCTGTCGCAAAGATCGACGCGACCTCAGAG TCGGAACTGGCCAGCAGGTTTGATGTGAGCGGCTACCCCACCATCAAGATCCTTAAAAAG GGGCAGGCTGTTGACTACGAGGGCTCCAGGACCCAGGAAGAAATTGTTGCCAAGGTCAAA GAGATCTCCCAGCCCAACTGGATTCCCCCACCAGAAGTCACTCTCGTGCTGACCAAAGAT AACTTCGATGAAGTGGTGAATGACGCAGACATCATTCTGGTGGAGTTTTATGCCCCATGG TGTGGACACTGTAAGAAACTGGCCCCTGAGTACGAGAGGGCTGCCAAGGAGCTGAGCAAG CGCTCACCCCCGATCCCCCTGGCAAAGGTTGACGCCACCGCAGAAACTGACCTGGCCAAG AGGTTTGATGTTTCCGGCTATCCCACCCTGAAAATCTTCCGCAAGGGGAAGCCCTTTGAT TACAACGGCCCACGGGAAAAATACGGGATTGTTGACTACATGATTGAGCAGTCGGGGCCG CCCTCCAAGCAGATCCTGGCCCTGAAGCAGGTCCAGGAGTTCCTGAAGGATGGGGATGAT GTCATCATCATTGGCGTCTTCAACTCGGAGAGTGACCCAGCCTACCAGCAGTACCAGGAC GCCGCTAACAGCCTGAGAGAAGATTACAAATTGTACCACACTTTCAGCACTGAAATAGCA AAGTTCTTGAAAGTCTCCCCAGACAAGTTGGTCGTCATGCAACCTGAGAAATTCCAATCC AAATACGAGCCTCAGAGCCACGTGCTGCACATCCAGGGCTCCACGGAGGCCTCCGCCATC AAGGAGCACGTGCTGAAGTACACCCTGCCCCTGGTCGGCCACCGCAAGGCCTCCAATGAC GCCAAGCGCTACTCGCGGCGCCCCCTGGTGGTCGTGTACTACGGCGTGGACTTCAGCTTC GACTACCGGGCAGCCACTCAGTTCTGGCGGAGCAAGGTCCTGGAGGTGGCCAAGGACTTC CCCGAGTACACCTTTGCCGTGGCCGACGAAGAGGACTTCGCCACGGAGGTGAAGGACCTG GGGCTCAGTGAGAGCGGCGAGGAGGTGAACGCAGCCATCCTGGACGAGGGCGGCCGCAAG TTCGCCATGGAGCCCGATGACTTCGATGCCAACGCCCTCCGCAGCTTTGTCACTGCCTTC AAGAAGGGAAAACTGAAGCCCGTTATCAAATCCCAGCCGGTGCCCAAGAACAACAAGGGG CCAGTCAAGATCGTGGTGGGGAAGACCTTTGACTCCATTGTGATGGATCCCAAGAAGGAT GTCCTCATTGAGTTCTACGCACCCTGGTGCGGGCACTGCAAGCAGCTGGAGCCCGTGTAC ACCTCCCTGGGCAAGAAGTACAAGGGCCACAAGAATCTAGTCATTGCCAAGATGGACGCA ACATCCAATGACATCACCAATGACCGCTACAAAGTCGAGGGGTTCCCCACCATCTACTTT GCCCCCAGTGGGGATAAAAAGAACCCAATTAAATTTGAGGATGGAAACAGAGATCTGGAG CATTTGAGCAAGTTTATAGAAGATCATGCCACAAAACTGAGCAGAACCAAGGAAGAACTT TGAAGGCCTTGAGAGTCTACAGAGGGCAAGCACAGAAGAGACCAGACACACTGCAGCTTC CAGCAGTCGGCAGGGGAGCCCGAGCCAGCCGTGAGCCTGACAGGTTTCCTCAGTGGCAGT ATCTCAAGGTGTTTTTGTTTTGTGTTTTAATTTTTTATACTTGGGTATTTCACCTCATGT TCTGAATACTGCATAGGTATGAATGACTCAGTAGATTAGTCCAGAATTTTACAGAGGATA CATCTATTTTTATTATTATTTGGGATTTGATTTTTTTAACCTTTCACCTTCTTTAATATA TTTCTTCAAAGCAGACAAGTTGAATCTCTTCTGTGTGAATTTTTTCCCCCTTTTTTTTAA TTTAAAATGTAAGAAGCCTTTGCCAAATCACATTGCCTTTTACCTTTTTATTTCATCATT GTCTGAGGGATCATTAGCTGAAGATCGGACTGTTGGTGTGTGGGTTTTGTTTCTTCCTGT TGTGGTACAAAGTGAGGACTGTCGCCAAACACCCTGCCGAGGACATCATTTCAGTCCAAC TCGGAGCCGCCGCTTGGTCCAGGGAGAAGCAGCATCTCTGCAGGCCTGGGTATCACTGTG CCTTCTCCTCCCAAACCAAGGACTTTGGGTGGGAGCATTTCCCAGGTGCCCTCAGGCTCA ACCTCCAAGAGGCCGCCTGCCTCTTCAGAATTGACCTTGCCAAGGAGGCCTGAGCTGGGG CACAGGCGGCTATTTTAAGGTGATAGGAAGGCTAGGGAAGACTTTCATGATGGAATAAAG AAATGATTGAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTTTCTTTCCCTCCCTCTAGGTTCGTTTCGCGAGACCAGGGCCTGAGGTCCAGGAGCGC CCGGCAGTAACTGGAGTGAGGAGGCCTCTCCGCACCGCAGCGATGAGGCCCCGGAAAGCA TGCCTGCTCCTCCTGCTCCTGGCCCTGGCTCAGCTGCTGGCCGCGGCGAGCGCCGGGGGC CCAGACGAAGATTCTTCTCATAAAGAAGATGCTCTTGAGGAGGAGGAGGAGGAGGAAGAG GACGACGATGAGGAGGAGGACGACGATGACTTAGAAGTTAAGGAAGAAAACGGAGTCTTA GTCCTAAAAGACTCGAACTTTGATAACTTCGTGGCTGACAAAGACACGGTGCTACTGGAG TTCTACGCTCCGTGGTGCGGACATTGCAAGCAGTTTGCTCCAGAATATGAAAAAATTGCA ACTACCTTGAAGGAGAATGACCCTCCCATTCCTGTCGCAAAGATCGACGCGACCTCAGAG TCGGAACTGGCCAGCAGGTTTGATGTGAGCGGCTACCCCACCATCAAGATCCTTAAAAAG GGGCAGGCTGTTGACTACGAGGGCTCCAGGACCCAGGAAGAAATTGTTGCCAAGGTCAAA GAGATCTCCCAGCCCAACTGGATTCCCCCACCAGAAGTCACTCTCGTGCTGACCAAAGAT AACTTCGATGAAGTGGTGAATGACGCAGACATCATTCTGGTGGAGTTTTATGCCCCATGG TGTGGACACTGTAAGAAACTGGCCCCTGAGTACGAGAGGGCTGCCAAGGAGCTGAGCAAG CGCTCACCCCCGATCCCCCTGGCAAAGGTTGACGCCACCGCAGAAACTGACCTGGCCAAG AGGTTTGATGTTTCCGGCTATCCCACCCTGAAAATCTTCCGCAAGGGGAAGCCCTTTGAT TACAACGGCCCACGGGAAAAATACGGGATTGTTGACTACATGATTGAGCAGTCGGGGCCG CCCTCCAAGCAGATCCTGGCCCTGAAGCAGGTCCAGGAGTTCCTGAAGGATGGGGATGAT GTCATCATCATTGGCGTCTTCAACTCGGAGAGTGACCCAGCCTACCAGCAGTACCAGGAC GCCGCTAACAGCCTGAGAGAAGATTACAAATTGTACCACACTTTCAGCACTGAAATAGCA AAGTTCTTGAAAGTCTCCCCAGACAAGTTGGTCGTCATGCAACCTGAGAAATTCCAATCC AAATACGAGCCTCAGAGCCACGTGCTGCACATCCAGGGCTCCACGGAGGCCTCCGCCATC AAGGAGCACGTGCTGAAGTACACCCTGCCCCTGGTCGGCCACCGCAAGGCCTCCAATGAC GCCAAGCGCTACTCGCGGCGCCCCCTGGTGGTCGTGTACTACGGCGTGGACTTCAGCTTC GACTACCGGGCAGCCACTCAGTTCTGGCGGAGCAAGGTCCTGGAGGTGGCCAAGGACTTC CCCGAGTACACCTTTGCCGTGGCCGACGAAGAGGACTTCGCCACGGAGGTGAAGGACCTG GGGCTCAGTGAGAGCGGCGAGGAGGTGAACGCAGCCATCCTGGACGAGGGCGGCCGCAAG TTCGCCATGGAGCCCGATGACTTCGATGCCAACGCCCTCCGCAGCTTTGTCACTGCCTTC AAGAAGGGAAAACTGAAGCCCGTTATCAAATCCCAGCCGGTGCCCAAGAACAACAAGGGG CCAGTCAAGATCGTGGTGGGGAAGACCTTTGACTCCATTGTGATGGATCCCAAGAAGGAT GTCCTCATTGAGTTCTACGCACCCTGGTGCGGGCACTGCAAGCAGCTGGAGCCCGTGTAC ACCTCCCTGGGCAAGAAGTACAAGGGCCACAAGAATCTAGTCATTGCCAAGATGGACGCA ACATCCAATGACATCACCAATGACCGCTACAAAGTCGAGGGGTTCCCCACCATCTACTTT GCCCCCAGTGGGGATAAAAAGAACCCAATTAAATTTGAGGATGGAAACAGAGATCTGGAG CATTTGAGCAAGTTTATAGAAGATCATGCCACAAAACTGAGCAGAACCAAGGAAGAACTT TGAAGGCCTTGAGAGTCTACAGAGGGCAAGCACAGAAGAGACCAGACACACTGCAGCTTC CAGCAGTCGGCAGGGGAGCCCGAGCCAGCCGTGAGCCTGACAGGTTTCCTCAGTGGCAGT ATCTCAAGGTGTTTTTGTTTTGTGTTTTAATTTTTTATACTTGGGTATTTCACCTCATGT TCTGAATACTGCATAGGTATGAATGACTCAGTAGATTAGTCCAGAATTTTACAGAGGATA CATCTATTTTTATTATTATTTGGGATTTGATTTTTTTAACCTTTCACCTTCTTTAATATA TTTCTTCAAAGCAGACAAGTTGAATCTCTTCTGTGTGAATTTTTTCCCCCTTTTTTTTAA TTTAAAATGTAAGAAGCCTTTGCCAAATCACATTGCCTTTTACCTTTTTATTTCATCATT GTCTGAGGGATCATTAGCTGAAGATCGGACTGTTGGTGTGTGGGTTTTGTTTCTTCCTGT TGTGGTACAAAGTGAGGACTGTCGCCAAACACCCTGCCGAGGACATCATTTCAGTCCAAC TCGGAGCCGCCGCTTGGTCCAGGGAGAAGCAGCATCTCTGCAGGCCTGGGTATCACTGTG CCTTCTCCTCCCAAACCAAGGACTTTGGGTGGGAGCATTTCCCAGGTGCCCTCAGGCTCA ACCTCCAAGAGGCCGCCTGCCTCTTCAGAATTGACCTTGCCAAGGAGGCCTGAGCTGGGG CACAGGCGGCTATTTTAAGGTGATAGGAAGGCTAGGGAAGACTTTCATGATGGAATAAAG AAATGATTGAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 13-190, gnl|bosTau2|chr4 (66062780-66062959) | |
| 13-190, gnl|Hg17|chr7 (148163257-148163061) | |
| 13-190, gnl|Mm7|chr6 (47772697-47772534) | |
| 374-580, gnl|bosTau2|chr4 (66068885-66069091) | |
| 374-580, gnl|canFam2|chr16 (4783876-4783652) | |
| 374-580, gnl|danRer3|chr24 (10336719-10336940) | |
| 374-580, gnl|dasNov1|scaffold_33175 (4821-5019) | |
| 374-580, gnl|echTel1|scaffold_317962 (46036-45820) | |
| 374-580, gnl|fr1|chrUn (48662795-48663025) | |
| 374-580, gnl|galGal2|chr2 (54259537-54259755) | |
| 374-580, gnl|hg17|chr7 (148153720-148153945) | |
| 374-580, gnl|Hg17|chr7 (148153938-148153732) | |
| 374-580, gnl|loxAfr1|scaffold_212048 (707-483) | |
| 374-580, gnl|mm7|chr6 (47766325-47766534) | |
| 374-580, gnl|Mm7|chr6 (47766529-47766323) | |
| 374-580, gnl|monDom2|scaffold_7 (8836467-8836691) | |
| 374-580, gnl|oryCun1|scaffold_207482 (75509-75284) | |
| 374-580, gnl|panTro1|chr6 (151008283-151008508) | |
| 374-580, gnl|rheMac2|chr3 (186332960-186333185) | |
| 374-580, gnl|rn3|chr4 (76218218-76218443) | |
| 374-580, gnl|tetNig1|chr6 (1273413-1273200) | |
| 374-580, gnl|xenTro1|scaffold_906 (437124-437340) | |
| 719-926, gnl|bosTau2|chr4 (66071662-66071869) | |
| 719-926, gnl|canFam2|chr16 (4789672-4789427) | |
| 719-926, gnl|danRer3|chr24 (10334875-10335104) | |
| 719-926, gnl|dasNov1|scaffold_33175 (4795-5046) | |
| 719-926, gnl|echTel1|scaffold_317962 (47326-47096) | |
| 719-926, gnl|fr1|chrUn (48662307-48662547) | |
| 719-926, gnl|galGal2|chr2 (54258501-54258742) | |
| 719-926, gnl|hg17|chr7 (148146884-148147134) | |
| 719-926, gnl|Hg17|chr7 (148147101-148146894) | |
| 719-926, gnl|loxAfr1|scaffold_212048 (677-487) | |
| 719-926, gnl|mm7|chr6 (47763011-47763262) | |
| 719-926, gnl|Mm7|chr6 (47763228-47763021) | |
| 719-926, gnl|monDom2|scaffold_7 (8831327-8831575) | |
| 719-926, gnl|oryCun1|scaffold_207482 (80465-80215) | |
| 719-926, gnl|rheMac2|chr3 (186332987-186333185) | |
| 719-926, gnl|rn3|chr4 (76214050-76214301) | |
| 719-926, gnl|tetNig1|chr6 (1273899-1273689) | |
| 719-926, gnl|xenTro1|scaffold_906 (430472-430696) | |
| 1084-1237, gnl|bosTau2|chr4 (66074745-66074898) | |
| 1084-1237, gnl|Hg17|chr7 (148143051-148142898) | |
| 1084-1237, gnl|Mm7|chr6 (47760407-47760254) | |
| 1627-2695, gnl|bosTau2|chr4 (66078527-66079588) | |
| 1627-2695, gnl|Hg17|chr7 (148138950-148137968) | |
| 1627-2695, gnl|Mm7|chr6 (47756221-47755254) | |
| 2712-2866, gnl|bosTau2|chr29 (4193883-4193731) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-190, gnl|bosTau2|chr4 (66062780-66062959) | |
| 13-190, gnl|Hg17|chr7 (148163257-148163061) | |
| 13-190, gnl|Mm7|chr6 (47772697-47772534) | |
| 374-580, gnl|bosTau2|chr4 (66068885-66069091) | |
| 374-580, gnl|canFam2|chr16 (4783876-4783652) | |
| 374-580, gnl|danRer3|chr24 (10336719-10336940) | |
| 374-580, gnl|dasNov1|scaffold_33175 (4821-5019) | |
| 374-580, gnl|echTel1|scaffold_317962 (46036-45820) | |
| 374-580, gnl|fr1|chrUn (48662795-48663025) | |
| 374-580, gnl|galGal2|chr2 (54259537-54259755) | |
| 374-580, gnl|hg17|chr7 (148153720-148153945) | |
| 374-580, gnl|Hg17|chr7 (148153938-148153732) | |
| 374-580, gnl|loxAfr1|scaffold_212048 (707-483) | |
| 374-580, gnl|mm7|chr6 (47766325-47766534) | |
| 374-580, gnl|Mm7|chr6 (47766529-47766323) | |
| 374-580, gnl|monDom2|scaffold_7 (8836467-8836691) | |
| 374-580, gnl|oryCun1|scaffold_207482 (75509-75284) | |
| 374-580, gnl|panTro1|chr6 (151008283-151008508) | |
| 374-580, gnl|rheMac2|chr3 (186332960-186333185) | |
| 374-580, gnl|rn3|chr4 (76218218-76218443) | |
| 374-580, gnl|tetNig1|chr6 (1273413-1273200) | |
| 374-580, gnl|xenTro1|scaffold_906 (437124-437340) | |
| 719-926, gnl|bosTau2|chr4 (66071662-66071869) | |
| 719-926, gnl|canFam2|chr16 (4789672-4789427) | |
| 719-926, gnl|danRer3|chr24 (10334875-10335104) | |
| 719-926, gnl|dasNov1|scaffold_33175 (4795-5046) | |
| 719-926, gnl|echTel1|scaffold_317962 (47326-47096) | |
| 719-926, gnl|fr1|chrUn (48662307-48662547) | |
| 719-926, gnl|galGal2|chr2 (54258501-54258742) | |
| 719-926, gnl|hg17|chr7 (148146884-148147134) | |
| 719-926, gnl|Hg17|chr7 (148147101-148146894) | |
| 719-926, gnl|loxAfr1|scaffold_212048 (677-487) | |
| 719-926, gnl|mm7|chr6 (47763011-47763262) | |
| 719-926, gnl|Mm7|chr6 (47763228-47763021) | |
| 719-926, gnl|monDom2|scaffold_7 (8831327-8831575) | |
| 719-926, gnl|oryCun1|scaffold_207482 (80465-80215) | |
| 719-926, gnl|rheMac2|chr3 (186332987-186333185) | |
| 719-926, gnl|rn3|chr4 (76214050-76214301) | |
| 719-926, gnl|tetNig1|chr6 (1273899-1273689) | |
| 719-926, gnl|xenTro1|scaffold_906 (430472-430696) | |
| 1084-1237, gnl|bosTau2|chr4 (66074745-66074898) | |
| 1084-1237, gnl|Hg17|chr7 (148143051-148142898) | |
| 1084-1237, gnl|Mm7|chr6 (47760407-47760254) | |
| 1627-2695, gnl|bosTau2|chr4 (66078527-66079588) | |
| 1627-2695, gnl|Hg17|chr7 (148138950-148137968) | |
| 1627-2695, gnl|Mm7|chr6 (47756221-47755254) | |
| 2712-2866, gnl|bosTau2|chr29 (4193883-4193731) |
| Expressed library(ies): 45 entry(ies) | More info |
| Expressed library(ies): 45 entry(ies) | Help | Less info |
| spl (1.8614) | |
| cje (1.65235) | |
| cmu (0.931966) | |
| cst (0.840218) | |
| cki (0.826173) | |
| cov (0.792917) | |
| cly (0.723851) | |
| sin (0.69979) | |
| cut (0.679694) | |
| eep (0.61282) | |
| lun (0.601956) | |
| csp (0.483559) | |
| mga (0.480615) | |
| pgl (0.473934) | |
| cli (0.458435) | |
| csk (0.422238) | |
| che (0.408942) | |
| jej (0.395687) | |
| ova (0.387397) | |
| thg (0.380373) | |
| sto (0.359648) | |
| fty (0.351679) | |
| ill (0.351185) | |
| duo (0.345602) | |
| cty (0.31224) | |
| pty (0.285429) | |
| ute (0.265569) | |
| med (0.232504) | |
| mas (0.210305) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sag (0.182715) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nco (0.161734) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ese (0.126502) | |
| clu (0.119646) | |
| ldo (0.0970026) |
| Expressed library(ies): 45 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (1.8614) | |
| cje (1.65235) | |
| cmu (0.931966) | |
| cst (0.840218) | |
| cki (0.826173) | |
| cov (0.792917) | |
| cly (0.723851) | |
| sin (0.69979) | |
| cut (0.679694) | |
| eep (0.61282) | |
| lun (0.601956) | |
| csp (0.483559) | |
| mga (0.480615) | |
| pgl (0.473934) | |
| cli (0.458435) | |
| csk (0.422238) | |
| che (0.408942) | |
| jej (0.395687) | |
| ova (0.387397) | |
| thg (0.380373) | |
| sto (0.359648) | |
| fty (0.351679) | |
| ill (0.351185) | |
| duo (0.345602) | |
| cty (0.31224) | |
| pty (0.285429) | |
| ute (0.265569) | |
| med (0.232504) | |
| mas (0.210305) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sag (0.182715) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nco (0.161734) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ese (0.126502) | |
| clu (0.119646) | |
| ldo (0.0970026) |