Ss1.1-Pig4-TMW8040E18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGAGGTGGCGGCGTCGGCGCCGGATCGCTTCTCTCGGGGACCGGCCGACCCGGTGAGCG AGAACGTAGCTCCGCACTGCTCTTCCTCCCGCTGGAAAACCGTCCCTTCTCACCATGTCT CAAAGCAGGCATCGCGCTGCGGCTCCGCCGCTGGAGCGCGAGGACAGCGGGACCTTCAGT TTGGGGAAGATGATTACAGCTAAGCCGGGGAAAACACCAATTCAGGTATTACATGAATAC GGCATGAAGACCAAGAACATCCCGGTTTATGAATGTGAAAGATCCGATGTGCAAATACAC GTGCCCACTTTCACCTTCAGAGTAACCGTTGGTGACATAACCTGCACAGGTGAAGGTACA AGTAAGAAGCTGGCGAAGCATAGAGCTGCAGAGGCTGCCATAAACATTTTGAAAGCCAAT GCAAGTATTTGCTTTGCAGTTCCTGACCCCTTAATGCCTGACCCTTCCAAGCAACCAAAG AACCAGCTTAATCCTATTGGTTCATTACAGGAATTGGCTATTCATCATGGCTGGAGACTT CCAGAATATACCCTTTCCCAGGAGGGAGGACCTGCGCACAAGAGAGAATATACCACAATT TGCAGGCTAGAATCATTCATGGAAACTGGAAAGGGGGCATCAAAGAAACAAGCCAAGAGA AATGCCGCTGAGAAATTTCTTGCTAAGTTCAGTAACATTTCTCCAGAGAACCACATTTCT TTGACAAATGTGGTAGGACATTCTTTAGGTTGTACTTGGCATTCGCTGAGGAATTCCCCT GGTGAGAAGATCAACTTACTGAAAAGAAGCCTCCTCAGTATTCCTAACACAGATTACATC CAGCTGCTCAGTGAAATCGCCAAGGAGCAAGGTTTTAATATAACATATTTGGATATAGAA GAACTGAGTGCCAACGGACAGTACCAATGTCTCGCTGAACTGTCCACCAGTCCCATCACA GTCTGTCACGGCTCTGGGATTTCCTGTGGCAATGCACAGAGTGACGCAGCTCACAACGCT TTGCAGTATTTAAAGATAATAGCGGAAAGAAAGTAAACTTGGAACAACTTAGAAAACCCT TCAGTAGCTCATAAGAAATTCCCCTTTTCACCCTATCCCAAGTAAAATGTTTACTATAAT GTTTGAGTTTGTGTGTTGTTTCTAAAGCTCTTCCTAGATTCCATCAGCACTCCAGATTTC ATTCTCTCCCAGTAGTTGATATTAAGCTGTTTTTAATGGCTTCAACTTTGTATTGGTATA TTGTATTTATAAACTTTGTACCATAGGCAGAGTGTAGCACCCATTTTACAATGCCATGTA CGTAGAAGGAAAAAACTGCATGTTTGTCATTGTTGATGATGGTAAAACAAAACTGCTAGC AACAGTCTTTCCTACTGGTGCTTAACCTCTTCGTGCAAGGCTTTATAAAGGGACTTCGAA GGGAGCTCCTTGGAATTAGTGTTGAGGAATGCACTATCAGGCATTTATTGAATGTGATTG TTAAATTTCAGGGAACACTATTGGTCTGCTGTGTATTCGGATTCATGTAATAAAGAGGTG TTGTTACAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGAGGTGGCGGCGTCGGCGCCGGATCGCTTCTCTCGGGGACCGGCCGACCCGGTGAGCG AGAACGTAGCTCCGCACTGCTCTTCCTCCCGCTGGAAAACCGTCCCTTCTCACCATGTCT CAAAGCAGGCATCGCGCTGCGGCTCCGCCGCTGGAGCGCGAGGACAGCGGGACCTTCAGT TTGGGGAAGATGATTACAGCTAAGCCGGGGAAAACACCAATTCAGGTATTACATGAATAC GGCATGAAGACCAAGAACATCCCGGTTTATGAATGTGAAAGATCCGATGTGCAAATACAC GTGCCCACTTTCACCTTCAGAGTAACCGTTGGTGACATAACCTGCACAGGTGAAGGTACA AGTAAGAAGCTGGCGAAGCATAGAGCTGCAGAGGCTGCCATAAACATTTTGAAAGCCAAT GCAAGTATTTGCTTTGCAGTTCCTGACCCCTTAATGCCTGACCCTTCCAAGCAACCAAAG AACCAGCTTAATCCTATTGGTTCATTACAGGAATTGGCTATTCATCATGGCTGGAGACTT CCAGAATATACCCTTTCCCAGGAGGGAGGACCTGCGCACAAGAGAGAATATACCACAATT TGCAGGCTAGAATCATTCATGGAAACTGGAAAGGGGGCATCAAAGAAACAAGCCAAGAGA AATGCCGCTGAGAAATTTCTTGCTAAGTTCAGTAACATTTCTCCAGAGAACCACATTTCT TTGACAAATGTGGTAGGACATTCTTTAGGTTGTACTTGGCATTCGCTGAGGAATTCCCCT GGTGAGAAGATCAACTTACTGAAAAGAAGCCTCCTCAGTATTCCTAACACAGATTACATC CAGCTGCTCAGTGAAATCGCCAAGGAGCAAGGTTTTAATATAACATATTTGGATATAGAA GAACTGAGTGCCAACGGACAGTACCAATGTCTCGCTGAACTGTCCACCAGTCCCATCACA GTCTGTCACGGCTCTGGGATTTCCTGTGGCAATGCACAGAGTGACGCAGCTCACAACGCT TTGCAGTATTTAAAGATAATAGCGGAAAGAAAGTAAACTTGGAACAACTTAGAAAACCCT TCAGTAGCTCATAAGAAATTCCCCTTTTCACCCTATCCCAAGTAAAATGTTTACTATAAT GTTTGAGTTTGTGTGTTGTTTCTAAAGCTCTTCCTAGATTCCATCAGCACTCCAGATTTC ATTCTCTCCCAGTAGTTGATATTAAGCTGTTTTTAATGGCTTCAACTTTGTATTGGTATA TTGTATTTATAAACTTTGTACCATAGGCAGAGTGTAGCACCCATTTTACAATGCCATGTA CGTAGAAGGAAAAAACTGCATGTTTGTCATTGTTGATGATGGTAAAACAAAACTGCTAGC AACAGTCTTTCCTACTGGTGCTTAACCTCTTCGTGCAAGGCTTTATAAAGGGACTTCGAA GGGAGCTCCTTGGAATTAGTGTTGAGGAATGCACTATCAGGCATTTATTGAATGTGATTG TTAAATTTCAGGGAACACTATTGGTCTGCTGTGTATTCGGATTCATGTAATAAAGAGGTG TTGTTACAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 897-1015, - strand, RNAz p=0.610033 | |
| 1055-1171, - strand, RNAz p=0.661653 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 897-1015, - strand, RNAz p=0.610033 | |
| 1055-1171, - strand, RNAz p=0.661653 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_003690, - |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 177-351, gnl|bosTau2|chr2 (7979047-7979221) | |
| 177-351, gnl|canFam2|chr36 (25106502-25106680) | |
| 177-351, gnl|danRer3|chr9 (383929-383775) | |
| 177-351, gnl|dasNov1|scaffold_39542 (6795-6617) | |
| 177-351, gnl|echTel1|scaffold_317123 (444946-444774) | |
| 177-351, gnl|hg17|chr2 (179140471-179140649) | |
| 177-351, gnl|Hg17|chr2 (179140648-179140474) | |
| 177-351, gnl|loxAfr1|scaffold_188234 (247-69) | |
| 177-351, gnl|mm7|chr2 (76490836-76491014) | |
| 177-351, gnl|Mm7|chr2 (76491013-76490839) | |
| 177-351, gnl|monDom2|scaffold_2 (79292007-79292185) | |
| 177-351, gnl|oryCun1|scaffold_160311 (5306-5480) | |
| 177-351, gnl|panTro1|chr13 (68926357-68926535) | |
| 177-351, gnl|rheMac2|chr12 (42102245-42102423) | |
| 177-351, gnl|rn3|chr3 (59242023-59242201) | |
| 177-351, gnl|tetNig1|chr2 (10926455-10926301) | |
| 177-351, gnl|xenTro1|scaffold_546 (242392-242570) | |
| 509-629, gnl|bosTau2|chr2 (7986221-7986341) | |
| 509-629, gnl|canFam2|chr36 (25099647-25099733) | |
| 509-629, gnl|danRer3|chr6 (29202225-29202311) | |
| 509-629, gnl|dasNov1|scaffold_39542 (13050-12964) | |
| 509-629, gnl|echTel1|scaffold_317123 (458172-458086) | |
| 509-629, gnl|fr1|chrUn (76672902-76672816) | |
| 509-629, gnl|galGal2|chr7 (16219862-16219773) | |
| 509-629, gnl|hg17|chr2 (179133498-179133584) | |
| 509-629, gnl|Hg17|chr2 (179133620-179133500) | |
| 509-629, gnl|loxAfr1|scaffold_63345 (5421-5335) | |
| 509-629, gnl|mm7|chr2 (76482913-76482999) | |
| 509-629, gnl|Mm7|chr2 (76483035-76482915) | |
| 509-629, gnl|monDom2|scaffold_2 (79282198-79282284) | |
| 509-629, gnl|oryCun1|scaffold_203270 (89694-89608) | |
| 509-629, gnl|panTro1|chr13 (68919679-68919765) | |
| 509-629, gnl|rheMac2|chr12 (42094263-42094349) | |
| 509-629, gnl|rn3|chr3 (59234552-59234638) | |
| 509-629, gnl|tetNig1|chr2 (10927023-10926937) | |
| 897-1569, gnl|bosTau2|chr2 (7994637-7995305) | |
| 897-1569, gnl|canFam2|chr36 (25088261-25088733) | |
| 897-1569, gnl|dasNov1|scaffold_18872 (4547-5034) | |
| 897-1569, gnl|echTel1|scaffold_296126 (64303-63813) | |
| 897-1569, gnl|hg17|chr2 (179121814-179122274) | |
| 897-1569, gnl|Hg17|chr2 (179122490-179121821) | |
| 897-1569, gnl|mm7|chr2 (76473643-76474071) | |
| 897-1569, gnl|Mm7|chr2 (76474286-76473653) | |
| 897-1569, gnl|monDom2|scaffold_2 (79275923-79276430) | |
| 897-1569, gnl|oryCun1|scaffold_203270 (100952-100464) | |
| 897-1569, gnl|panTro1|chr13 (68908002-68908456) | |
| 897-1569, gnl|rheMac2|chr12 (42082484-42082942) | |
| 897-1569, gnl|rn3|chr3 (59224015-59224458) | |
| 970-1173, gnl|bosTau2|chr13 (47030297-47030091) | |
| 970-1173, gnl|Hg17|chr2 (179122417-179122232) | |
| 970-1173, gnl|Mm7|chr2 (76474213-76474014) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 177-351, gnl|bosTau2|chr2 (7979047-7979221) | |
| 177-351, gnl|canFam2|chr36 (25106502-25106680) | |
| 177-351, gnl|danRer3|chr9 (383929-383775) | |
| 177-351, gnl|dasNov1|scaffold_39542 (6795-6617) | |
| 177-351, gnl|echTel1|scaffold_317123 (444946-444774) | |
| 177-351, gnl|hg17|chr2 (179140471-179140649) | |
| 177-351, gnl|Hg17|chr2 (179140648-179140474) | |
| 177-351, gnl|loxAfr1|scaffold_188234 (247-69) | |
| 177-351, gnl|mm7|chr2 (76490836-76491014) | |
| 177-351, gnl|Mm7|chr2 (76491013-76490839) | |
| 177-351, gnl|monDom2|scaffold_2 (79292007-79292185) | |
| 177-351, gnl|oryCun1|scaffold_160311 (5306-5480) | |
| 177-351, gnl|panTro1|chr13 (68926357-68926535) | |
| 177-351, gnl|rheMac2|chr12 (42102245-42102423) | |
| 177-351, gnl|rn3|chr3 (59242023-59242201) | |
| 177-351, gnl|tetNig1|chr2 (10926455-10926301) | |
| 177-351, gnl|xenTro1|scaffold_546 (242392-242570) | |
| 509-629, gnl|bosTau2|chr2 (7986221-7986341) | |
| 509-629, gnl|canFam2|chr36 (25099647-25099733) | |
| 509-629, gnl|danRer3|chr6 (29202225-29202311) | |
| 509-629, gnl|dasNov1|scaffold_39542 (13050-12964) | |
| 509-629, gnl|echTel1|scaffold_317123 (458172-458086) | |
| 509-629, gnl|fr1|chrUn (76672902-76672816) | |
| 509-629, gnl|galGal2|chr7 (16219862-16219773) | |
| 509-629, gnl|hg17|chr2 (179133498-179133584) | |
| 509-629, gnl|Hg17|chr2 (179133620-179133500) | |
| 509-629, gnl|loxAfr1|scaffold_63345 (5421-5335) | |
| 509-629, gnl|mm7|chr2 (76482913-76482999) | |
| 509-629, gnl|Mm7|chr2 (76483035-76482915) | |
| 509-629, gnl|monDom2|scaffold_2 (79282198-79282284) | |
| 509-629, gnl|oryCun1|scaffold_203270 (89694-89608) | |
| 509-629, gnl|panTro1|chr13 (68919679-68919765) | |
| 509-629, gnl|rheMac2|chr12 (42094263-42094349) | |
| 509-629, gnl|rn3|chr3 (59234552-59234638) | |
| 509-629, gnl|tetNig1|chr2 (10927023-10926937) | |
| 897-1569, gnl|bosTau2|chr2 (7994637-7995305) | |
| 897-1569, gnl|canFam2|chr36 (25088261-25088733) | |
| 897-1569, gnl|dasNov1|scaffold_18872 (4547-5034) | |
| 897-1569, gnl|echTel1|scaffold_296126 (64303-63813) | |
| 897-1569, gnl|hg17|chr2 (179121814-179122274) | |
| 897-1569, gnl|Hg17|chr2 (179122490-179121821) | |
| 897-1569, gnl|mm7|chr2 (76473643-76474071) | |
| 897-1569, gnl|Mm7|chr2 (76474286-76473653) | |
| 897-1569, gnl|monDom2|scaffold_2 (79275923-79276430) | |
| 897-1569, gnl|oryCun1|scaffold_203270 (100952-100464) | |
| 897-1569, gnl|panTro1|chr13 (68908002-68908456) | |
| 897-1569, gnl|rheMac2|chr12 (42082484-42082942) | |
| 897-1569, gnl|rn3|chr3 (59224015-59224458) | |
| 970-1173, gnl|bosTau2|chr13 (47030297-47030091) | |
| 970-1173, gnl|Hg17|chr2 (179122417-179122232) | |
| 970-1173, gnl|Mm7|chr2 (76474213-76474014) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| pro (0.512033) | |
| pla (0.401016) | |
| sug (0.381874) | |
| bla (0.373042) | |
| tbr (0.308356) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| ece (0.229305) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| spl (0.143184) | |
| ret (0.128733) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| ldo (0.0970026) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| pla (0.401016) | |
| sug (0.381874) | |
| bla (0.373042) | |
| tbr (0.308356) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| ece (0.229305) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| spl (0.143184) | |
| ret (0.128733) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| ldo (0.0970026) |