Non-Coding RNA Search

Ss1.1-Pig4-TMW8040E19.5

Sequence:


               
               AAGCATGGTTGATTTACAGTGTTGTGCCAATTTCTGCTCTACAGCAAAGTGACCCAGTCA
TACATATACATTCCTTTTTTGCATTATCTTCCATCATAGTCTGTCCCAAGAGACTGGATA
TAGTTCTCCATGGTATACAGTGATCATCCATTTCTTTGCGCCCTGTAACTGTCACTGTCG
TAGTTTTTCAAATACGTAGAAAAGGAGGTTACGAGGTAAAGAAAAGACGAATTGGGACTC
TTTCTCATGTCAGCACAATTAGGTAATTAATTCACTTAACTCCTTGCAGAATTACTTTAA
ATGGTTATATGGTGGGAAGACAAGTAATTGAGTTAATCTTGCTTTTCAACTGCGTGTATC
TTAGCTGTATAGACTGACACCTAGGAGGCTTGGGTCAGGGATCAACACACTGCTCTGAGG
CATATAGAAAAATTGCATTATCAGTGTTTAGCTTTCTGACCAGAAAAAATAGCAAAGAGG
ACTATGTTCAGTAACATGACCTGGTTTCCGTTTGAAGATCATGAGGAATGTACGAAGACT
GGGAAATTGTATATATGGATTAAAGCGTTGCTGATAAAGTAGAAACAGATTAAACCTTTT
ACTTATCTCAAACATTGTATATTCTTGAATCCAAGATAACAGTACTTGTTAGATATTCTG
TTGGTTAACAAGAGCTTTTTATAGTTTCTTTTTAGGGGAAAATGCTGTAATAAATGTGCA
TGTGGATTATAAAACCCAGTCTAATTGGAAAAATAAGTATGAGACTTAGGATCATAGACG
TACAGTGGGGGCTTCTTAGGAATTTCTTTTTTTTTCTTTTTAGGGCTGCACCACAGCATG
TGGAGGTTCCCAGGCTAGGGGTTGAATCGGCAGCTGCTGGCCTACACCACAGCCACAGCA
AGGCCAGGTCAGAGCCACGTCTGCGACCTACACCACAGCTCATGGCAGCGTTGGGTCCTT
AACGCACTAGGTGAGGCCAGGGATTGAATCCGAATCCTCATGGATACTAATCAGGTCTGT
TACCACTCAGCCATGACGGGAGCTCCTTTTTAGGAATTCTTAACCCCAGTTTACACTGCA
GTGCATAACTTTGTAGTAGAGAAACAATTTGTATGTAATAAGTAAATGTATGGTATACTG
TGTATTGTGTATTTATAGAATTTAAATAAATATTTTTGTGACCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCATGGTTGATTTACAGTGTTGTGCCAATTTCTGCTCTACAGCAAAGTGACCCAGTCA
TACATATACATTCCTTTTTTGCATTATCTTCCATCATAGTCTGTCCCAAGAGACTGGATA
TAGTTCTCCATGGTATACAGTGATCATCCATTTCTTTGCGCCCTGTAACTGTCACTGTCG
TAGTTTTTCAAATACGTAGAAAAGGAGGTTACGAGGTAAAGAAAAGACGAATTGGGACTC
TTTCTCATGTCAGCACAATTAGGTAATTAATTCACTTAACTCCTTGCAGAATTACTTTAA
ATGGTTATATGGTGGGAAGACAAGTAATTGAGTTAATCTTGCTTTTCAACTGCGTGTATC
TTAGCTGTATAGACTGACACCTAGGAGGCTTGGGTCAGGGATCAACACACTGCTCTGAGG
CATATAGAAAAATTGCATTATCAGTGTTTAGCTTTCTGACCAGAAAAAATAGCAAAGAGG
ACTATGTTCAGTAACATGACCTGGTTTCCGTTTGAAGATCATGAGGAATGTACGAAGACT
GGGAAATTGTATATATGGATTAAAGCGTTGCTGATAAAGTAGAAACAGATTAAACCTTTT
ACTTATCTCAAACATTGTATATTCTTGAATCCAAGATAACAGTACTTGTTAGATATTCTG
TTGGTTAACAAGAGCTTTTTATAGTTTCTTTTTAGGGGAAAATGCTGTAATAAATGTGCA
TGTGGATTATAAAACCCAGTCTAATTGGAAAAATAAGTATGAGACTTAGGATCATAGACG
TACAGTGGGGGCTTCTTAGGAATTTCTTTTTTTTTCTTTTTAGGGCTGCACCACAGCATG
TGGAGGTTCCCAGGCTAGGGGTTGAATCGGCAGCTGCTGGCCTACACCACAGCCACAGCA
AGGCCAGGTCAGAGCCACGTCTGCGACCTACACCACAGCTCATGGCAGCGTTGGGTCCTT
AACGCACTAGGTGAGGCCAGGGATTGAATCCGAATCCTCATGGATACTAATCAGGTCTGT
TACCACTCAGCCATGACGGGAGCTCCTTTTTAGGAATTCTTAACCCCAGTTTACACTGCA
GTGCATAACTTTGTAGTAGAGAAACAATTTGTATGTAATAAGTAAATGTATGGTATACTG
TGTATTGTGTATTTATAGAATTTAAATAAATATTTTTGTGACCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               682-788, - strand, RNAz p=0.676424

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               682-788, - strand, RNAz p=0.676424

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               571-788, gnl|bosTau2|chr2 (53568772-53568543)
               

               
               571-788, gnl|Hg17|chr2 (197454047-197453820)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               571-788, gnl|bosTau2|chr2 (53568772-53568543)
               

               
               571-788, gnl|Hg17|chr2 (197454047-197453820)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               csp (0.161186)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               csp (0.161186)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

	571-788, gnl\|bosTau2\|chr2 (53568772-53568543)
	571-788, gnl\|Hg17\|chr2 (197454047-197453820)

	cmu (0.186393)
	sto (0.179824)
	csp (0.161186)
	che (0.136314)
	nmm (0.132802)
	thg (0.126791)
	tra (0.123092)